Sequence of DPV Rice stripe virus
Rice stripe virus isolate BA2-JB segment RNA3, complete sequence.
ACC No: FJ602676
Dated: 2010-07-02 | Length: 2485 | CRC: -1403868734
ID FJ602676; SV 1; linear; genomic RNA; STD; VRL; 2485 BP.
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AC FJ602676;
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DT 02-JUL-2010 (Rel. 105, Created)
DT 02-JUL-2010 (Rel. 105, Last updated, Version 1)
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DE Rice stripe virus isolate BA2-JB segment RNA3, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2485
RA Jonson G.-M., Choi H.-S., Kim J.-S., Choi I.-R., K-H K.;
RT "Complete genome sequence of the RNAs 3 and 4 segments of Rice stripe virus
RT isolates in Korea and their phylogenetic relationships with Japan and China
RT isolates";
RL Plant Pathol. J. 25(2):142-150(2009).
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RN [2]
RP 1-2485
RA Kim K.-H., Gilda Jonson M., Choi H.-S., Kim J.-S., Choi I.-R.;
RT ;
RL Submitted (01-JAN-2009) to the EMBL/GenBank/DDBJ databases.
RL Agricultural Biotechnology, Seoul National University, 599 Gwanak-ro,
RL Daehak-dong, Gwanak-gu, Seoul 151-921, South Korea
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FH Key Location/Qualifiers
FH
FT source 1. .2485
FT /organism="Rice stripe virus"
FT /segment="RNA3"
FT /isolate="BA2-JB"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="2007"
FT /db_xref="taxon:12331"
FT CDS 66. .701
FT /codon_start=1
FT /product="putative replication protein"
FT /note="NS3"
FT /protein_id="ACR57006.1"
FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD
FT IHSSRHPSIDEHQFLRLLHGPDDAITLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY
FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN
FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPAPGSSPAVL"
FT CDS complement(1425. .2393)
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="ACR57007.1"
FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG
FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR
FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD"
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SQ Sequence 2485 BP; 767 A; 529 C; 424 G; 765 T; 0 other;
fj602676 Length: 2485 02-JUL-2010 Type: N Check: 3525 ..
1 acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc
51 cgacatcatc taagtatgaa cgtgttcaca tcgtctgtgg gttctgtgga
101 atttgatcat cctttgcttt tggagaatga tctgaccagt ttgagcataa
151 actgtgatga tgtccattgt tcttcaagag ccttatgtta tatatatgac
201 atccattcat ctaggcaccc ttccattgat gagcatcagt ttctgaggct
251 tcttcatggc cctgatgatg ctatcactct aggctccttc ttgaaaactc
301 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt
351 cctactataa tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa
401 gccaagaccc ccatcaacaa attgctggac atgcagaatg tccaaagaca
451 atttgccctt taccgttcct agtgtcaagg gatttcctcc agatgcagag
501 ctctacattg tgccaatatc tgaccatgat ggaaagcctg tcaaatttga
551 caataggaaa actctatata gatcacctag taagaaaagg cataagtatg
601 tcatttcttc tgataaacca cctcttagtg cacgttatgt taagtacgtt
651 gattctagtg cactagaacc cgcaccaggc agctctccag ctgtgctgta
701 gaaataaaaa gaaaaaaata aaaaagaaaa taaaataaat aatcaaaaaa
751 acacacaaaa aaatcttaaa aatgaaaaac acacaaaaaa accaaaaaac
801 taaaaaaact aaaaaaacat catgacctaa aaaaactgca caccactggt
851 tgtatagtgg gctctagttg gtagagaaag ctatgctttt gcctaaagcc
901 atgattggcc aatccttaaa atgtgctaag cacattatcc gaagatgtct
951 cggatgtttt ttttacctaa cctaattttt ttgtattttt atataatttt
1001 tcgatttttt tgtattttat atacatattt ttgttttttg atttttttgt
1051 tttttaatat tttttcttct gattactaca ttaatatatt tgattattca
1101 tatacttcaa atatatagta tgtattataa aaatagagca atataataaa
1151 gctagtataa ctacattaca aacatatatc taaatattta gatagactta
1201 tcaagctaaa gactctacta gagagtgagt aataataatg gcaatacatc
1251 acacacaaag cccaaaacca cacagacaaa ataacttatg gaatataatt
1301 taaaactaaa atatacacat gtaaatatac atattaactt acacctaaag
1351 aaacaacaca ctgtttgaag acatgcatct tccagggaga tatgagatcc
1401 cccacaacta ctgacttgct cagtctagtc atctgcacct tctgcctcat
1451 cctcgaagaa ctccttcacc aacccgctga cttcagatgc tgtctttgaa
1501 gtgttctcag caaggatctt catcagtttg ctctgttgag ccaagtacag
1551 ccttgtctga ttcccataag tgctgatcgt attgacagac ataccagcca
1601 gcgcatcaaa gattgtggtc ttcactttcc cattggtgat gaattcatct
1651 aagaccttct ttctgccatc ttccttcttc ttgtcagcca ggttctttga
1701 cttacatgtg atgaccagga gaccagttgt gtacttcatc atgtctatgt
1751 cttttgtcag accacgctcc ttcttcttac cctctggcat ggtctttttg
1801 gttatttgga aggagtgaat gatgtgcaca acaaacaaaa tgtgacttag
1851 ggagtgagtt gtgcagtaag gagctgtttc actctccagt ttgatatatt
1901 gtggaacata gtcccacagt aagttgtcac atcctgttaa tcccaggtca
1951 gaggagtcca cagccatctt aacaccagaa atttgtctca ccacttcatg
2001 tgagacattt gggaatagct gagccagcct tccaagtgtg atagcattgg
2051 catttgtccc cactgaggac actatcccat acctcgacac caaggtcgaa
2101 gcctctgtgc ttccagccgc cactttcact ttcttagtga catctctcac
2151 aaagccagtg cctctcacat atctcatggt gatgcacata gtcatatcct
2201 tggccagtgt atcaccacct ttgtccttca atatgccaat cagagttgca
2251 gcatcatagc ctgcatactc tatctgacca gcaaaggtca caacatcagc
2301 tttatgagca gtcaggtaag acaacgcatc tttggagatg tcattgattg
2351 ccttctgcaa atcagctaga gtggctggct tgttggtgcc cattgtagca
2401 agaggtactg gaggaatggt tgcggcttag atgaaatttg gaatgtaaaa
2451 gcaaaatcga aaattttatt accctgactt tgtgt