Sequence of DPV Rice stripe virus
Rice stripe virus isolate IS-JB segment RNA3, complete sequence.
ACC No: FJ602678
Dated: 2010-07-02 | Length: 2482 | CRC: -1306266275
ID FJ602678; SV 1; linear; genomic RNA; STD; VRL; 2482 BP.
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AC FJ602678;
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DT 02-JUL-2010 (Rel. 105, Created)
DT 02-JUL-2010 (Rel. 105, Last updated, Version 1)
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DE Rice stripe virus isolate IS-JB segment RNA3, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2482
RA Jonson G.-M., Choi H.-S., Kim J.-S., Choi I.-R., K-H K.;
RT "Complete genome sequence of the RNAs 3 and 4 segments of Rice stripe virus
RT isolates in Korea and their phylogenetic relationships with Japan and China
RT isolates";
RL Plant Pathol. J. 25(2):142-150(2009).
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RN [2]
RP 1-2482
RA Kim K.-H., Gilda Jonson M., Choi H.-S., Kim J.-S., Choi I.-R.;
RT ;
RL Submitted (01-JAN-2009) to the EMBL/GenBank/DDBJ databases.
RL Agricultural Biotechnology, Seoul National University, 599 Gwanak-ro,
RL Daehak-dong, Gwanak-gu, Seoul 151-921, South Korea
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FH Key Location/Qualifiers
FH
FT source 1. .2482
FT /organism="Rice stripe virus"
FT /segment="RNA3"
FT /isolate="IS-JB"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="2007"
FT /db_xref="taxon:12331"
FT CDS 66. .701
FT /codon_start=1
FT /product="putative replication protein"
FT /note="NS3"
FT /protein_id="ACR57010.1"
FT /translation="MNVFTSSVGSVEFDHPLLLQNDLTSLSINCDDVHCSSRALCYIYD
FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY
FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN
FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPSPGSSPAVL"
FT CDS complement(1422. .2390)
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="ACR57011.1"
FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG
FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR
FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD"
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SQ Sequence 2482 BP; 757 A; 527 C; 433 G; 765 T; 0 other;
fj602678 Length: 2482 02-JUL-2010 Type: N Check: 4236 ..
1 acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc
51 cgacatcatc taagtatgaa cgtgttcaca tcgtctgtgg gttctgtgga
101 atttgatcat cctctgcttt tgcagaatga tctgaccagt ttgagcataa
151 actgtgatga tgtccattgt tcttcaagag ccttatgtta tatatatgac
201 attcattcct ctaggcaccc ttccattgat gagcatcagt ttctgaggct
251 tcttcatggc cctgatgatg ctgtcactct aggctccttc ttgaaaactc
301 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt
351 cctactataa tgatgtcttc ctcatatgtg aagttcttca ctgaagtgaa
401 gccaagaccc ccatcaacaa attgctggac atgcagaatg tccaaagaca
451 atttgccctt taccgttcct agtgtcaagg gatttcctcc agatgcagag
501 ctctacattg tgccaatatc tgaccatgat ggaaagcctg tcaaatttga
551 caataggaag actctatata gatcacctag taagaaaagg cataagtatg
601 tcatttcttc tgataaacca cctcttagtg cacgttatgt taagtacgtt
651 gattctagtg cactagaacc ctcaccaggc agctctccag ctgtgctgta
701 gaaataaaaa gaaaaaaaag aaaaaaagaa aaaagaaaat aaaccaaata
751 atcaaaaaaa caaaaaatct taaaaatgga aaacaaaaaa accaaaaaac
801 taataaaact aaaaaacatc atgacttaaa aaactgcaca ccactggttg
851 tctagtgggc tctagttggt agagaaagct atgcttttgc ctaaagccat
901 gattggccaa tccttaaaat gtgctaagca cattatccga agatgtctcg
951 gatgtttttt tacctaacct aatttttttg tatttttata taattttttg
1001 atttttttgt gttttatata catatttttg ttttttgatt tttttgtttt
1051 ttgatatttt ttcttctaat tactacatta atatatttga ttattcatat
1101 acttaaaata tatagtatgt attataaaaa tagagcaata taataaagct
1151 agtataacta cattacaaac atatatctaa atatttagat agacttatca
1201 aactaaagac tctactagag agtgagtaat aataatggca atacatcaca
1251 cacaaagccc aaaaccacac agacaaaata acttatgaaa tataatttaa
1301 aactaaaata tacacatata aatatacata ttaacttaca cctaaagaaa
1351 caacacactg tttgaagaca tgcatcttcc agggagatgt gagatccccc
1401 acaactactg acttgctcag tctagtcatc tgcaccttct gcctcgtcct
1451 cgaagaactc cttcaccaac ccgctgactt cagatgctgt ctttgaagtg
1501 ttctcggcaa ggatcttcat cagtttgctc tgttgagcca agtacagcct
1551 tgtctgattc ccataagtgc tgatcgtatt gacagacata ccagccagcg
1601 catcgaagat tgtggtcttc actttcccat tggtgatgaa ttcatctaag
1651 accttctttc tgccatcttc cttcttcttg tcagccaggt tctttgactt
1701 gcatgtgatg accaggagac cagttgtgta cttcatcatg tctatgtctt
1751 ttgtcagacc acgctccttc ttcttaccct ctggcatggt ctttttggtt
1801 atttggaagg agtgaatgat gtgcacaaca aacaaaatgt gacttaggga
1851 gtgagttgtg cagtaaggag ctgtttcact ctccagtttg atatattgtg
1901 gaacatagtc ccacagtaag ttgtcacatc ctgttagtcc caggtcagag
1951 gagtccacag ccatcttaac accagaaatt tgtctcacaa cttcatgtga
2001 gacatttggg aatagctgag ccagccttcc aagtgtgata gcattggcat
2051 ttgtccccac cgaggacact atcccatacc tcgacaccaa ggtcgaagcc
2101 tctgtgcttc cagccgccac tttcactttc ttagtgacat ctctcacaaa
2151 gccagtgcct ctcacatatc tcatggtgat gcacatagtc atatccttgg
2201 ccagtgtgtc accacctttg tccttcaata tgccaatcag agttgcagca
2251 tcatagcctg catactctat ctgaccagca aaggtcacaa catcagcttt
2301 gtgagcagtc aggtaagaca acgcatcttt ggagatgtca ttgattgcct
2351 tctgcaaatc agctagagtg gctggcttgt tggtgcccat tgtagcaaga
2401 ggtactggag gaatggttgc ggcttagatg aaatttggaa tgtaaaagca
2451 aaatcgaaaa ttttattacc cagactttgt gt