Sequence of DPV Rice stripe virus
Rice stripe virus isolate MA-JN segment RNA3, complete sequence.
ACC No: FJ602680
Dated: 2010-07-02 | Length: 2485 | CRC: -1761186498
ID FJ602680; SV 1; linear; genomic RNA; STD; VRL; 2485 BP.
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AC FJ602680;
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DT 02-JUL-2010 (Rel. 105, Created)
DT 02-JUL-2010 (Rel. 105, Last updated, Version 1)
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DE Rice stripe virus isolate MA-JN segment RNA3, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2485
RA Jonson G.-M., Choi H.-S., Kim J.-S., Choi I.-R., K-H K.;
RT "Complete genome sequence of the RNAs 3 and 4 segments of Rice stripe virus
RT isolates in Korea and their phylogenetic relationships with Japan and China
RT isolates";
RL Plant Pathol. J. 25(2):142-150(2009).
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RN [2]
RP 1-2485
RA Kim K.-H., Gilda Jonson M., Choi H.-S., Kim J.-S., Choi I.-R.;
RT ;
RL Submitted (01-JAN-2009) to the EMBL/GenBank/DDBJ databases.
RL Agricultural Biotechnology, Seoul National University, 599 Gwanak-ro,
RL Daehak-dong, Gwanak-gu, Seoul 151-921, South Korea
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FH Key Location/Qualifiers
FH
FT source 1. .2485
FT /organism="Rice stripe virus"
FT /segment="RNA3"
FT /isolate="MA-JN"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="2007"
FT /db_xref="taxon:12331"
FT CDS 66. .701
FT /codon_start=1
FT /product="putative replication protein"
FT /note="NS3"
FT /protein_id="ACR57014.1"
FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD
FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY
FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN
FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPSPGSSPAVL"
FT CDS complement(1425. .2393)
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="ACR57015.1"
FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG
FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR
FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD"
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SQ Sequence 2485 BP; 766 A; 529 C; 429 G; 761 T; 0 other;
fj602680 Length: 2485 02-JUL-2010 Type: N Check: 9901 ..
1 acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc
51 cgacatcatc taagtatgaa cgtgttcaca tcgtctgtag gttctgtgga
101 atttgatcat cctctgcttt tggagaatga tctgaccagt ttgagcataa
151 actgtgatga tgtccattgt tcttcaagag ccttatgtta tatatatgac
201 attcattcgt ctaggcaccc ctccattgat gagcatcagt ttctgaggct
251 tcttcatggc cctgatgatg ctgtcactct aggctccttc ttgaaaactc
301 tgatctggat tctgtctcat gataagaatc tcccagaaga gtacagactt
351 cctactataa tgatgtcatc ttcatatgtg aagttcttca ctgaagtgaa
401 gccaagaccc ccatcaacaa attgctggac atgcagaatg tccaaagaca
451 atttgccctt taccgttcct agtgtcaagg gatttcctcc agatgcagag
501 ctctatattg tgccaatatc tgaccatgat ggaaagcctg tcaaatttga
551 caataggaag actctatata gatcacctag taagaaaagg cataagtatg
601 tcatttcttc tgataaacca cctcttagtg cacgttatgt taagtacgtt
651 gattctagtg cactggagcc ctcaccaggc agctctccag ctgtgctgta
701 gaaataaaaa aagaaaaaaa agaaaaaaga aaataaaaca aacaatcaaa
751 aaaacacaaa aaaatcccaa aaatggaaaa cacaaaaaaa ccaaaaaact
801 aaaaaaacta aaaaaacatc atgacctaaa aaactgcaca ccactggttg
851 tctagtgggc tctagttggt agagaaagct atgcttttgc ctaaagccat
901 gattggccaa tccttaaaat gtgctaagca cattatccga agatgtctcg
951 gatgtttttt tacctaacct aatttttttg tatttttata tagttttttg
1001 atttttttgt attttatata catatttttg attttttgat ttttttgttt
1051 tttaatatat ttttttacta attactacat taatatattt gattattcat
1101 atacttaaaa tatatagtat gtattataaa aatagagcaa tataataaag
1151 ctagtataac tacattacaa acacatatct aaatatttat atagacttat
1201 caaactaaag actctactag agagtgagca ataatagtgg caatacatca
1251 cacacaaagc ccaaaaccac acaaacaaaa taacttatgg aatataatta
1301 caaactaaaa tatacacata ttaaatatac atattaactt acacctaaag
1351 aaacaacaca ctgtttgaag acatgcatct tccagggaga tatgagatcc
1401 cccacaacta ctgacttgtt cagtctagtc atctgcacct tctgcctcat
1451 cctcgaagaa ctccttcacc aacccgctga cttcagatgc tgtctttgaa
1501 gtgttctcag caaggatctt catcagcttg ctctgttgag ccaagtacag
1551 ccttgtctga ttcccataag tgctgatcgt attgacagac ataccagcca
1601 gcgcatcgaa gattgtggtc ttcactttcc cattggtgat gaattcatct
1651 aagaccttct ttctgccatc ttccttcttc ttgtcagcca ggttctttga
1701 cttgcatgtg atgaccagga gaccagttgt gtacttcatc atgtctatgt
1751 cttttgtcag accacgctcc ttcttcttac cctctggcat ggtctttttg
1801 gttatctgga aggagtgaat gatgtgcaca acaaacaaaa tgtgacttag
1851 ggagtgagtt gtgcagtaag gagctgtttc actctccagt ttgatatatt
1901 gtggaacata gtcccacagt aagttgtcac atcctgttag tcccaggtca
1951 gaagagtcca cagccatttt aacaccagaa atttgtctca caacttcatg
2001 tgagacattt gggaatagct gagccagcct tccaagtgtg atggcattgg
2051 catttgttcc caccgaggac actatcccat acctcgacac caaggtcgaa
2101 gcctctgtgc ttccagctgc cactttcact ttcttggtga catctctcac
2151 aaagccagtg cctctcacat atctcatggt gatgcacata gtcatatcct
2201 tggccaatgt gtcaccacct ttgtccttca atatgccaat caaagttgca
2251 gcatcatagc ctgcatactc tatctgacca gcaaaggtca caacatcagc
2301 tttatgagca gtcaggtaag acaacgcatc tttggagatg tcattgatcg
2351 ccttctgcaa atcagctaga gtggctggct tgttggtgcc cattgtagca
2401 agaggtactg gaggaatggt tgcggcttag atgaaatttg gaatgtaaaa
2451 gcaaaatcga aaattttatt acccagactt tgtgt