Sequence of DPV Rice stripe virus
Rice stripe virus isolate YG-JN segment RNA3, complete sequence.
ACC No: FJ602687
Dated: 2010-07-02 | Length: 2491 | CRC: 1904122181
ID FJ602687; SV 1; linear; genomic RNA; STD; VRL; 2491 BP.
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AC FJ602687;
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DT 02-JUL-2010 (Rel. 105, Created)
DT 02-JUL-2010 (Rel. 105, Last updated, Version 1)
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DE Rice stripe virus isolate YG-JN segment RNA3, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2491
RA Jonson G.-M., Choi H.-S., Kim J.-S., Choi I.-R., K-H K.;
RT "Complete genome sequence of the RNAs 3 and 4 segments of Rice stripe virus
RT isolates in Korea and their phylogenetic relationships with Japan and China
RT isolates";
RL Plant Pathol. J. 25(2):142-150(2009).
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RN [2]
RP 1-2491
RA Kim K.-H., Gilda Jonson M., Choi H.-S., Kim J.-S., Choi I.-R.;
RT ;
RL Submitted (01-JAN-2009) to the EMBL/GenBank/DDBJ databases.
RL Agricultural Biotechnology, Seoul National University, 599 Gwanak-ro,
RL Daehak-dong, Gwanak-gu, Seoul 151-921, South Korea
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FH Key Location/Qualifiers
FH
FT source 1. .2491
FT /organism="Rice stripe virus"
FT /segment="RNA3"
FT /isolate="YG-JN"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="2008"
FT /db_xref="taxon:12331"
FT CDS 66. .701
FT /codon_start=1
FT /product="putative replication protein"
FT /note="NS3"
FT /protein_id="ACR57028.1"
FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD
FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY
FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN
FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPSPGSSPAVL"
FT CDS complement(1431. .2399)
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="ACR57029.1"
FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG
FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR
FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD"
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SQ Sequence 2491 BP; 774 A; 526 C; 431 G; 760 T; 0 other;
fj602687 Length: 2491 02-JUL-2010 Type: N Check: 7124 ..
1 acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc
51 cgacatcatc taagtatgaa cgtgttcaca tcgtctgtgg gttctgtgga
101 atttgatcat cctctgcttt tggagaatga tctgaccagt ttgagcataa
151 actgtgatga tgtccattgt tcttcaagag ccttatgtta tatatatgac
201 attcattcat ctaggcaccc ttccattgat gagcatcagt ttctgaggct
251 tcttcatggc cctgatgatg ctgtcactct aggctccttc ttgaaaactc
301 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt
351 cctactataa tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa
401 gccaagaccc ccatcaacaa attgctggac atgcagaatg tccaaagaca
451 atttgccctt taccgttcct agtgtcaagg gatttcctcc agatgcagag
501 ctctacattg tgccaatatc tgaccatgat ggaaagcctg tcaaatttga
551 caataggaag actctatata gatcacctag taagaaaagg cataagtatg
601 tcatttcttc tgataaacca cctcttagtg cacgttatgt taagtacgtt
651 gattctagtg cactagaacc ctcaccaggc agctctccag ctgtgctgta
701 gaaataaaaa gaaaaaagaa aaaaagaaaa aagaaaataa aacgaataat
751 caaaaaaaca aaaaaatctt aaaaatgaaa aacacaaaaa aaccaaaaaa
801 ctaaaaaaac taaaaaaact aaaaaacatc atgacctagg aaactgcaca
851 ccactggttg tctagtgggc tctagttggt agagaaagct atgcttttgc
901 ctaaagccat gattggccaa tccttaaaat gtgctaagca cattatccga
951 agatgtctcg gatgtttttt tacctaacct aatttttttg tatttttata
1001 tgattttttg atttttttgt attttatata catatttttg tttttgattt
1051 ttttgttttt taatattttt tcttctaatt actacattaa tatatttgat
1101 tattcatata cttaaaatat atagtatgta ttataaaaat agagtaatat
1151 aataaagcta gtaaaactac ataacaagca tatatctaaa tatttagata
1201 gacttatcaa actaaagact ctactagaga gtgagtaata ataatggcaa
1251 tacatcacac acaaagccca aaaccacaca gacaaaataa cttatggaat
1301 ataattaaaa actaaaatat acacatataa atatacatat taacttacac
1351 ctaaagaaac aacacactgt ttgaagacat gcatcttcca gggagatatg
1401 aaatccccca caactactga cttgttcagt ctagtcatct gcaccttctg
1451 cctcgtcctc gaagaactcc ttcaccaacc cgctgacttc agatgctgtc
1501 tttgaagtgt tctcagcaag gatcttcatc agtttgctct gttgagccaa
1551 gtacagcctt gtctgattcc cataagtgct gatcgtattg acagacatac
1601 cagccagcgc atcgaagatt gtggtcttca ctttcccatt ggtgatgaat
1651 tcatctaaga ccttcttcct accatcttcc ttcttcttgt cagccaggtt
1701 ctttgacttg catgtgatga ccaggagacc agttgtgtac ttcatcatgt
1751 ctatgtcttt tgtcagacca cgctccttct tcttaccctc tggcatggtc
1801 tttttggtta tttggaagga gtgaatgatg tgcacaacaa acaaaatgtg
1851 acttagggag tgagttgtgc agtaaggagc tgtttcactc tccagtttga
1901 tatattgtgg aacatagtcc cacagtaagt tatcacatcc tgttagtccc
1951 aggtcagagg agtccacagc catcttaaca ccagaaattt gtctcacaac
2001 ttcatgtgag acatttggga atagctgagc cagccttcca agtgtgatag
2051 cattggcatt tgtccccacc gaggacacta tcccatacct cgacaccaag
2101 gtcgaagcct ctgtgcttcc agccgccact ttcactttct tagtgacatc
2151 tctcacaaag ccagtgcctc tcacatatct catggtgatg cacatagtca
2201 tatccttggc cagtgtgtca ccacctttgt ccttcaatat gccaatcaga
2251 gttgcagcat catagcctgc atactctatc tgaccagcaa aggtcacaac
2301 atcagcttta tgagcagtca ggtaagacaa cgcatctttg gagatgtcat
2351 tgattgcctt ctgcaaatca gctagagtgg ctggcttgtt ggtgcccatt
2401 gtagcaagag gtactggagg aatggttgcg gcttagatga aatttggaat
2451 gtaaaagcaa aatcgaaaat tttattaccc agactttgtg t