Sequence of DPV Rice stripe virus
Rice stripe virus isolate IS-JB segment RNA4, complete sequence.
ACC No: FJ602691
Dated: 2010-07-02 | Length: 2140 | CRC: -1530244063
ID FJ602691; SV 1; linear; genomic RNA; STD; VRL; 2140 BP.
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AC FJ602691;
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DT 02-JUL-2010 (Rel. 105, Created)
DT 02-JUL-2010 (Rel. 105, Last updated, Version 1)
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DE Rice stripe virus isolate IS-JB segment RNA4, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2140
RA Jonson G.-M., Choi H.-S., Kim J.-S., Choi I.-R., K-H K.;
RT "Complete genome sequence of the RNAs 3 and 4 segments of Rice stripe virus
RT isolates in Korea and their phylogenetic relationships with Japan and China
RT isolates";
RL Plant Pathol. J. 25(2):142-150(2009).
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RN [2]
RP 1-2140
RA Kim K.-H., Gilda Jonson M., Choi H.-S., Kim J.-S., Choi I.-R.;
RT ;
RL Submitted (01-JAN-2009) to the EMBL/GenBank/DDBJ databases.
RL Agricultural Biotechnology, Seoul National University, 599 Gwanak-ro,
RL Daehak-dong, Gwanak-gu, Seoul 151-921, South Korea
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FH Key Location/Qualifiers
FH
FT source 1. .2140
FT /organism="Rice stripe virus"
FT /segment="RNA4"
FT /isolate="IS-JB"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="2007"
FT /db_xref="taxon:12331"
FT CDS 55. .591
FT /codon_start=1
FT /product="putative SP"
FT /protein_id="ACR57034.1"
FT /translation="MQDVQRTVEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPER
FT VTEDTKKLILKGCVYIAYHHSLETDTLFIKVHKHIPEFCHSFLSHLLGGEDDDNALIDI
FT GLFFNMLQPSLGGWITKNFLRHPNRMSKDQIKLLLDQIIKMAKAESSDTEEYEKVWKKM
FT PTYFESIIQPLLHKT"
FT CDS complement(1229. .2089)
FT /codon_start=1
FT /product="NSvc4"
FT /protein_id="ACR57035.1"
FT /translation="MALSRLLSTSKSKVLYDDLSEESQKRVDNKNRKSLALSKRPLNQG
FT RVTIDQAATMLGLEPFSFSDVKVNKYDMFIAKQDYSVKAHRRATFNILVDPYWFHQPLT
FT YYPFFRVATFAMVWIGIKGRASGITTLRIIDKSYVNSSDQVEVEVRYPISKNFAVLGSL
FT ANFLALEDKHNLQVSVSVDDSSVQNCVISRTLWFWGIERTDLPVSMKTNDTVMFEFEPL
FT EDKAINHLSSFSNFTTNVVQKAVGGAFTSKSFPELDTEKEFGVVKQPKKIPITKKSKSE
FT VSVIM"
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SQ Sequence 2140 BP; 686 A; 443 C; 401 G; 610 T; 0 other;
fj602691 Length: 2140 02-JUL-2010 Type: N Check: 8475 ..
1 acacaaagtc cagggcattt gtacaacgat ccagcaattt aatcagaatc
51 gaagatgcaa gacgtacaaa ggacagtaga agtttctgtt ggtcctattg
101 taggcctaga ttacactcta ttgtatgaca ctctgcccga gactgttagc
151 gataacatta ctctacctga tttgaaagat ccagagagag tcacagaaga
201 tactaagaag ctaatactca aaggctgtgt ttacatagca tatcatcact
251 ccttggagac tgacaccctt ttcatcaaag ttcacaaaca tataccagag
301 ttttgtcact cattcctatc acacctttta ggaggtgaag atgatgacaa
351 tgctctcata gatattggtc tgtttttcaa catgttgcaa ccctctttgg
401 gcggttggat aaccaagaac tttcttagac accctaatag gatgtctaag
451 gaccagatta aattgctcct ggatcagatt atcaagatgg ctaaggctga
501 gagctcagac acagaagagt atgagaaagt gtggaagaag atgccaactt
551 attttgaatc aatcatacaa cctcttctgc acaagacata gtttgttgca
601 tgtcgcattt tccaccaaag agagcttgca ctctagaagt tggagccagt
651 ttgggttgac cttcttgtat gaaaatacaa gtatattata gtctaaacaa
701 tatacatgat ggttgtttac ttaagcttga cagtttgtga ataatttgtg
751 tgtgactgag cgtgtgtgta tatatgtatt aatatattac tgtacacagg
801 tgtgcagatg caaacaccta aaacaaataa acaaatatat acctatcaaa
851 tcatatacat gcttgtgagt cttggctcct ctacatacac acatacaaga
901 acaattgcaa aaatactaat aactttgctt ttacaatatc aaaaccaaaa
951 actgaaatac caaaaacatg agaaaataga aaatcaaaaa caatgaatgg
1001 tgctaagcac cacatccgga tgtggtgcgt agcaccattt tcataacatt
1051 agtctataac ctacttgtgg caaaaacacc catatgcatg aagtgcatag
1101 cactctctta tggattgacc actataatta cgtgaatgca tagcattctc
1151 ttaaaaaaat agagcagaac agaccacatc aagtgcgtag cactagatgc
1201 tagcatactc tggaactggt tatctcacct acatgatgac agaaacttca
1251 gattttgatt tctttgtgat gggtatcttc tttggctgct tcaccacacc
1301 aaactccttc tcagtgtcta gctcagggaa gctcttgctg gtgaaagcac
1351 ctccaacagc tttctgaaca acattagtcg tgaaattact gaagctggac
1401 aaatggttta ttgccttatc ttctagtggt tcaaattcaa acatcacagt
1451 gtcattggtc ttcatggaca ctggcagatc agtcctttca atcccccaga
1501 accaaagagt tctagagatg acacagttct gcactgagct gtcatcaaca
1551 gatacggaca cttgaagatt atgcttatcc tccaaagcca gaaaattcgc
1601 tagagaaccc aagacagcaa aattcttgct aattgggtag cgaacctcta
1651 cctcaacttg atctgaggag ttcacatagg acttatctat tatgcggagg
1701 gtagttattc cactagctct acccttgatt ccaatccaga ccatagcaaa
1751 agttgccact ctgaagaatg gataataggt gagaggttga tgaaaccaat
1801 atggatcaac aagtatgttg aaagttgctc tcctatgggc cttcacagaa
1851 tagtcctgtt tggctatgaa catatcatac ttgttcacct tgacatctga
1901 gaagctgaag ggttccaatc caagcattgt ggcagcttgg tcaatcgtaa
1951 ccctaccctg gttcagaggc ctcttggaga gagctaaaga tttcctattc
2001 ttattatcaa ctctcttttg ggactcctca ctaaggtcat catagagtac
2051 cttacttttt gaagtggaca aaagtcgaga caaagccata attaaagtat
2101 atattagctt aatctcaaaa gatatgccct gactgtgtgt