Sequence of DPV Rice stripe virus
Rice stripe virus isolate SC-CN segment RNA4, complete sequence.
ACC No: FJ602696
Dated: 2010-07-02 | Length: 2158 | CRC: -61996487
ID FJ602696; SV 1; linear; genomic RNA; STD; VRL; 2158 BP.
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AC FJ602696;
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DT 02-JUL-2010 (Rel. 105, Created)
DT 02-JUL-2010 (Rel. 105, Last updated, Version 1)
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DE Rice stripe virus isolate SC-CN segment RNA4, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2158
RA Jonson G.-M., Choi H.-S., Kim J.-S., Choi I.-R., K-H K.;
RT "Complete genome sequence of the RNAs 3 and 4 segments of Rice stripe virus
RT isolates in Korea and their phylogenetic relationships with Japan and China
RT isolates";
RL Plant Pathol. J. 25(2):142-150(2009).
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RN [2]
RP 1-2158
RA Kim K.-H., Gilda Jonson M., Choi H.-S., Kim J.-S., Choi I.-R.;
RT ;
RL Submitted (01-JAN-2009) to the EMBL/GenBank/DDBJ databases.
RL Agricultural Biotechnology, Seoul National University, 599 Gwanak-ro,
RL Daehak-dong, Gwanak-gu, Seoul 151-921, South Korea
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FH Key Location/Qualifiers
FH
FT source 1. .2158
FT /organism="Rice stripe virus"
FT /segment="RNA4"
FT /isolate="SC-CN"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="2007"
FT /db_xref="taxon:12331"
FT CDS 55. .591
FT /codon_start=1
FT /product="putative SP"
FT /protein_id="ACR57044.1"
FT /translation="MQDVQRTIEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPER
FT VTEDTKKLILKGCVYIAYHHPLETDTLFIKVHKHIPEFCHSFLSHLLGGEDDDNALIDI
FT GLFFNMLQPSLGGWITKNFLRHPNRMSKDQIKLLLDQIIKMAKAESSDTEEYEKVWKKM
FT PTYFESIIQPLLHKT"
FT CDS complement(1247. .2107)
FT /codon_start=1
FT /product="NSvc4"
FT /protein_id="ACR57045.1"
FT /translation="MALSRLLSTSKSKVLYDDLSEESQKRVDNKNRKSLALSKRPLNQG
FT RVTIDQAATMLGLEPFSFSDVKVNKYDMFIAKQDYSVKAHRKATFNILVDPYWFHQPLT
FT HYPFFRVATFAMVWIGIKGRASGITTLRIIDKSYVNPSDQVEVEVRYPISKNFAVLGSL
FT ANFLALEDKHNLQVSVSVDDSSVQNCVISRTLWFWGIERTDLPVSMKTNDTVMFEFEPL
FT EDKAINHLSSFSNFTTNVVQKAVGGAFTSKSFPELDTEKEFGVVKQPKKIPITKKSKSE
FT VSVIM"
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SQ Sequence 2158 BP; 691 A; 448 C; 396 G; 623 T; 0 other;
fj602696 Length: 2158 02-JUL-2010 Type: N Check: 6723 ..
1 acacaaagtc cagggcattt gtacaacgat ccagcaattt aatcagaatc
51 gaagatgcaa gacgtacaaa ggacaataga agtttctgtt ggtcctattg
101 taggcctaga ttacactcta ttgtatgaca ctctgcccga gactgttagc
151 gataacatta ctctacctga tttgaaagat ccagagagag tcacggaaga
201 taccaagaaa ctaatactca aaggctgtgt ttacatagca tatcatcacc
251 ccttggagac tgacaccctt ttcatcaaag ttcacaaaca tataccagag
301 ttttgtcact cattcctatc tcacctttta ggaggtgaag atgatgacaa
351 tgctcttata gacattggtc tgtttttcaa catgttgcaa ccctctttgg
401 gcggttggat aaccaagaat tttcttagac accctaatag aatgtctaag
451 gaccaaatta aactgctcct ggatcagatt atcaagatgg ctaaggctga
501 gagctcagac acagaagagt atgagaaagt gtggaagaag atgccaactt
551 attttgaatc aattatccaa cctcttctac acaaaacata gtttatttcg
601 tatcacattt tccacccacg agtgcttgca ttctagaagt ggagccagtt
651 tgggttgacc ttcttgtatg aaaatacgaa tataaattat atagtctaaa
701 caatatacat gatgtttgtc cacttaagct tgacagtttg taaataattg
751 tgtgtgattg tgtgtgtgtg tatatatgtt aatatatacc tgtgcacagg
801 tgtatagata taaacacttg aaacaaataa attaatatat tcccatcaac
851 tcatatacat acttgtgagt cttagctcct ctgtatacac acatagaaac
901 atgagagtat catacaggac ccattgcaaa tactaataac tttgttttac
951 aatgtcaaaa ctaaaaactg aaataccaaa aacatgagaa aatagaaaat
1001 caaaaacaat gaatggtgct aagcaccaca tccggatgtg gtgcgtagca
1051 ccattttcat aacattaatc cataacctac tagtagcaaa aacacccata
1101 tgcatgaagc gcatagcact cctttatgga ttgactacta tgattacgtg
1151 aatgcatagc attctcctga aaaaaatcag agcagagcag acctcatcaa
1201 gtgcgtagca ctagatatta gcacactccg gaactggtta tctcacctac
1251 ataatgacag aaacttcaga ttttgatttc tttgtgatag gtatcttctt
1301 tggctgcttc accacaccga actccttctc agtatctagc tcagggaagc
1351 tcttgctggt gaaagcacct ccaacagctt tctgaacaac attagtcgta
1401 aaattactga agctggacaa atggtttatg gccttatctt ctagtggttc
1451 aaactcaaac atcacagtgt cattggtctt catggacact ggcagatcag
1501 tcctctcaat cccccagaac caaagagttc tagagatgac acagttctgc
1551 actgagctgt catcaacaga tactgacact tgaagattat gcttatcctc
1601 caaagccaga aaatttgcta gagaacccaa gacagcaaaa ttcttgctaa
1651 ttgggtagcg aacctctacc tcaacttgat ctgaggggtt cacataggac
1701 ttgtctatta tgcggagggt tgttattcca ctagctctac ccttaattcc
1751 aatccagacc atggcaaaag ttgccactct aaagaatggg taatgggtga
1801 gaggttgatg aaaccaatat ggatcaacaa gtatgttaaa agttgctttc
1851 ctatgggcct tcacagagta gtcctgtttg gctatgaaca tatcatactt
1901 gttcactttg acatctgaga agctgaaggg ttccaatcca agcatggtgg
1951 cagcttggtc aattgtaacc ctaccctggt tcagaggcct cttggagaga
2001 gctagagatt tcctattctt attatcaact ctcttttggg actcctcact
2051 aaggtcatca tagagtacct tactttttga agtggacaaa agtcgagaca
2101 aagccataat taaagtatat attagcttaa tctcaaaaga tataccctga
2151 ctttgtgt