Sequence of DPV Rice stripe virus
Rice stripe virus isolate AD-JJ segment RNA4, complete sequence.
ACC No: FJ602697
Dated: 2010-07-02 | Length: 2157 | CRC: -946565717
ID FJ602697; SV 1; linear; genomic RNA; STD; VRL; 2157 BP.
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AC FJ602697;
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DT 02-JUL-2010 (Rel. 105, Created)
DT 02-JUL-2010 (Rel. 105, Last updated, Version 1)
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DE Rice stripe virus isolate AD-JJ segment RNA4, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2157
RA Jonson G.-M., Choi H.-S., Kim J.-S., Choi I.-R., K-H K.;
RT "Complete genome sequence of the RNAs 3 and 4 segments of Rice stripe virus
RT isolates in Korea and their phylogenetic relationships with Japan and China
RT isolates";
RL Plant Pathol. J. 25(2):142-150(2009).
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RN [2]
RP 1-2157
RA Kim K.-H., Gilda Jonson M., Choi H.-S., Kim J.-S., Choi I.-R.;
RT ;
RL Submitted (01-JAN-2009) to the EMBL/GenBank/DDBJ databases.
RL Agricultural Biotechnology, Seoul National University, 599 Gwanak-ro,
RL Daehak-dong, Gwanak-gu, Seoul 151-921, South Korea
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FH Key Location/Qualifiers
FH
FT source 1. .2157
FT /organism="Rice stripe virus"
FT /segment="RNA4"
FT /isolate="AD-JJ"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="2007"
FT /db_xref="taxon:12331"
FT CDS 55. .591
FT /codon_start=1
FT /product="putative SP"
FT /protein_id="ACR57046.1"
FT /translation="MQDVQRTIEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPER
FT VTEDTKKLILKGCVYIAYHHPLETDTLFIKVHKHIPEFCHSFLSHLLGGEDDDNALIDI
FT GLFFNMLQPSLGGWITKNFLRHPNRMSKDQIKMLLDQIIKMAKAESSDTEEYEKVWKKM
FT PTYFESIIQPLLHKT"
FT CDS complement(1246. .2106)
FT /codon_start=1
FT /product="NSvc4"
FT /protein_id="ACR57047.1"
FT /translation="MALSRLLSTSKSKVLYDDLSEESQKRVDNKNRKSLALSKRPLNQG
FT RVTIDQAATMLGLEPFSFSDVKVNKYDMFIAKQDYSVKAHRKATFNILVDPYWFHQPLT
FT HYPFFRVATFAMVWIGIKGRASGITTLRIIDKSYVNSSDQVEVEVRYPISKNFAVLGSL
FT ANFLALEDKHNLQVSVSVDDSSVQNCVISRTLWFWGIERTDLPVSMKTNDTVMFEFEPL
FT EDKAINHLSSFSNFTTNVVQKAVGGAFTSKSFPELDTEKEFGVVKQPKKIPITKKSKSE
FT VSVIM"
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SQ Sequence 2157 BP; 694 A; 436 C; 402 G; 625 T; 0 other;
fj602697 Length: 2157 02-JUL-2010 Type: N Check: 4715 ..
1 acacaaagtc cagggcattt gtacaacgat ccagcaattt aatcagaatc
51 gaagatgcaa gacgtacaaa ggacaataga agtttctgtt ggtcctattg
101 taggcctaga ttacactcta ttgtatgaca ctctgcccga gactgttagc
151 gataacatta ctctacctga tttgaaagat ccagagagag tcacggaaga
201 tactaagaag ctaatactca aaggctgtgt ttacatagca tatcatcacc
251 ccttggagac tgacaccctt ttcatcaaag tacacaaaca tataccagag
301 ttttgtcact cattcttatc acacctgtta ggaggtgaag atgatgacaa
351 tgctcttata gacattggtc tgtttttcaa catgttgcaa ccctctttgg
401 gcggttggat aactaagaat tttcttagac accctaatag gatgtctaag
451 gaccaaatta aaatgctcct ggatcagatt atcaagatgg ctaaggctga
501 gagctcagac acagaagagt atgagaaagt gtggaagaag atgccaactt
551 attttgaatc aattatccaa cctcttctac acaaaacata gtttattgta
601 tatcacattt tccacctatg agtgcttgca ttctagaagt ggagccagtt
651 tgggttgacc ttcttgtatg aaaatacgag tatattatag tctaaacaat
701 atacatgatg tttgtccact taagtttgac agtttgtaaa taattgtgtg
751 tgattgtgcg tgtgtgtata tatgttaata taaaactgtg cacaggtgtg
801 tagatatgaa cacttgaaac aaataaattt atatattcct atcaactcat
851 atacatactt gtgagtctta gctcttctat atacacacat agaaacatga
901 gagtatcata caagacccat tgcaaaaata ctaataactt tgtttttaca
951 atgtcaaaac taaaaactga aataccaaaa acatgagaaa atagaaaatc
1001 aaaaacaatg aatggtgcta agcaccacat ccggatgtgg tgcgtagcac
1051 cattttcata acattaatct ataacctact agtggcaaaa acacccatac
1101 acatgaagtg catagcactc tcttatggat tgactactat gagtacttga
1151 atgcatagca ttctcctgaa aaaaagcaga gaagaacaga ccacatcaag
1201 tgcgtagcac taaatgttag catactccgg aactggttat ctcacctaca
1251 tgatgacaga aacttcagat tttgatttct ttgtgatggg tatcttcttt
1301 ggctgcttca ccacaccgaa ctccttctca gtgtctagct cagggaagct
1351 cttgctagtg aaagcacctc caacagcttt ctgaacaaca ttagtcgtaa
1401 aattactgaa gctggacaaa tggtttatgg ccttatcttc tagtggttca
1451 aattcaaaca tcacagtgtc attggtcttc atggacactg gcagatcagt
1501 cctctcaatc ccccagaacc aaagagttct ggagatgaca cagttctgca
1551 ctgagctgtc atcaacagat acggacactt gaagattatg cttatcctcc
1601 aaagccagaa aattcgctag agaacccaag acagcaaaat tcttgctaat
1651 tgggtagcga acctctacct cgacttgatc tgaggagttc acataggact
1701 tgtctattat gcggagggta gttattccac tagctctacc cttaattcca
1751 atccaaacca tagcaaaagt tgccactcta aagaatgggt aatgggtgag
1801 aggttgatga aaccaatatg gatcaacaag tatgttgaaa gttgctttcc
1851 tatgggcctt cacagaatag tcttgtttgg ctatgaacat atcatacttg
1901 ttcaccttga catctgagaa gctgaagggt tccaatccaa gcattgtggc
1951 agcttggtca atcgtaaccc taccctggtt cagaggcctc ttggagagag
2001 ctagagattt cctattctta ttatctactc tcttttggga ctcctcacta
2051 aggtcatcat agagtacctt actttttgaa gtggacaaaa gtcgagacaa
2101 agccataatt aaagtatata ttagcttaat ctcaaaagat ataccctgac
2151 tgtgtgt