Sequence of DPV Rice stripe virus
Rice stripe virus isolate SA-JN segment RNA4, complete sequence.
ACC No: FJ602698
Dated: 2010-07-02 | Length: 2140 | CRC: 364957804
ID FJ602698; SV 1; linear; genomic RNA; STD; VRL; 2140 BP.
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AC FJ602698;
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DT 02-JUL-2010 (Rel. 105, Created)
DT 02-JUL-2010 (Rel. 105, Last updated, Version 1)
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DE Rice stripe virus isolate SA-JN segment RNA4, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2140
RA Jonson G.-M., Choi H.-S., Kim J.-S., Choi I.-R., K-H K.;
RT "Complete genome sequence of the RNAs 3 and 4 segments of Rice stripe virus
RT isolates in Korea and their phylogenetic relationships with Japan and China
RT isolates";
RL Plant Pathol. J. 25(2):142-150(2009).
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RN [2]
RP 1-2140
RA Kim K.-H., Gilda Jonson M., Choi H.-S., Kim J.-S., Choi I.-R.;
RT ;
RL Submitted (01-JAN-2009) to the EMBL/GenBank/DDBJ databases.
RL Agricultural Biotechnology, Seoul National University, 599 Gwanak-ro,
RL Daehak-dong, Gwanak-gu, Seoul 151-921, South Korea
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FH Key Location/Qualifiers
FH
FT source 1. .2140
FT /organism="Rice stripe virus"
FT /segment="RNA4"
FT /isolate="SA-JN"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="2008"
FT /db_xref="taxon:12331"
FT CDS 55. .591
FT /codon_start=1
FT /product="putative SP"
FT /protein_id="ACR57048.1"
FT /translation="MQDVQRTVEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPER
FT VTEDTKKLILKGCVYIAYHHPLETDTLFIKVHKHIPEFCHSFLSHLLGGEDDDNALIDI
FT GLFFNMLQPSLGGWITKNFLRHPNRMSKDQIKLLLDQIIKMAKAESSDTEEYEKVWKKM
FT PTYFESIIQPLLHKT"
FT CDS complement(1229. .2089)
FT /codon_start=1
FT /product="NSvc4"
FT /protein_id="ACR57049.1"
FT /translation="MALSRLLSTSKSKVLYDDLSEESQKRVDNKNRKSLALSKRPLNQG
FT RVTIDQAATVLGLEPFSFSDVKVNKYDMFIAKQDYSVKAHRRATFNILVDPYWFHQPLT
FT HYPFFRVATFAMVWIGIKGRASGITTLRIIDKSYVNSSDQVEVEVRYPISKNFAVLGSL
FT ANFLALEDKHNLQVSVSVDDSSVQNCVISRTLWFWGIERTDLPVSMKTNDTVMFEFEPL
FT EDKAINHLSSFSNFTTNVVQKAVGGAFTSKSFPELDTEKEFGVVKQPKKIPITKKSKSE
FT VSVIM"
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SQ Sequence 2140 BP; 685 A; 449 C; 395 G; 611 T; 0 other;
fj602698 Length: 2140 02-JUL-2010 Type: N Check: 9478 ..
1 acacaaagtc cagggcattt gtacaacgat ccagcaattt aatcagaatc
51 gaagatgcaa gacgtacaaa ggacagtaga agtttctgtt ggtcctattg
101 taggcctaga ttacactcta ttgtatgaca ctctgcccga gactgttagc
151 gataacatta ctctacctga tttgaaagat ccagagagag tcacggaaga
201 tactaagaag ctaatactca aaggctgtgt ttacatagca tatcatcacc
251 ccttggagac tgataccctt ttcatcaaag ttcacaaaca tataccagag
301 ttttgtcact cattcctatc acacctttta ggaggtgaag atgatgacaa
351 tgctctcata gacattggtc tgtttttcaa catgttgcaa ccctctttgg
401 gcggttggat aaccaagaat tttcttagac accctaatag aatgtctaag
451 gaccagatta aattgcttct ggatcagatt atcaagatgg ctaaggctga
501 gagctcagac acagaagagt atgagaaagt gtggaagaag atgccaactt
551 attttgaatc aattatccaa cctcttctac acaagacata gtttattgca
601 tatcacattt tccaccaaca aaagcttgca ctctagaagt gtagccagtt
651 tgggttgacc ttcttgtatg aaaatacaag tatattatag tctaaacaat
701 atacatgatg tttgtttact ttagcttgac agtttgtaaa taattgtgtg
751 tgattgagcg tgtgtgtata tatgtatcaa tatacaactg cacacaggtg
801 tgcagatgca aacacctgaa acaaacaaac aaatatatac ctatcaaatc
851 ttatacatgc ttgtgagtct tggctcctct acatacacac atacaagaac
901 catagcaaaa atactaataa ctttgctttt acaatatcaa aaccaaaaac
951 tgaaatacca aaaacattag aaaatagaaa atcaaaaaca atgaatggtg
1001 ctaagcacct catccggatg tggtgcgtag caccattttc ataactttag
1051 tctataacct acttgtggca aaaacaccca tatgcatgaa gtgcatagca
1101 ctctcttatg gattgactac tataattacg tgaatgcata gcattctctt
1151 gaaaaaaagc agagcagaac agaccacatc aagtgcgtag cactagttgc
1201 tagcatactc tggaactggt tatctcacct acatgatgac agaaacttca
1251 gattttgatt tctttgtgat gggtatcttc tttggctgct tcaccacacc
1301 gaactccttc tcagtgtcca gctcagggaa gctcttgctg gtgaaagcac
1351 ctccaacagc tttctgaaca acattagtcg tgaaattact gaagctggac
1401 aaatggttta ttgccttatc ttctagtggt tcaaattcaa acatcacagt
1451 atcattggtc ttcatggaca ctggcagatc agtcctttca atcccccaga
1501 accaaagagt tctagagatg acacagttct gcactgagct gtcatcaaca
1551 gatacggaca cttgaagatt atgcttatcc tccaaagcca gaaaattcgc
1601 tagagaaccc aagacagcaa aattcttgct aattgggtag cgaacctcta
1651 cctcaacttg atctgaggag ttcacatagg acttgtctat tatgcggagg
1701 gtagttattc cactagctct acccttgatt ccaatccaga ccatagcaaa
1751 agttgccact ctaaagaatg gataatgggt gagaggttga tgaaaccaat
1801 atggatcaac aagtatgttg aaagttgctc tcctatgggc cttcacagaa
1851 tagtcctgtt tggctatgaa catatcatac ttgttcacct tgacatctga
1901 gaagctgaag ggttccaatc caagcactgt ggcagcttgg tcaatcgtaa
1951 ccctaccctg gttcagaggc ctcttggaga gagctaaaga tttcctattc
2001 ttattatcaa ctctcttttg ggactcctca ctaaggtcat catagagtac
2051 cttacttttt gaagtggaca aaagtcgaga caaagccata attaaagtat
2101 atattagctt aatctcaaaa gatatgccct gactgtgtgt