Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus isolate AH1, complete genome.
ACC No: FJ646611
Dated: 2009-02-23 | Length: 2786 | CRC: 1644023361
ID FJ646611; SV 1; circular; genomic DNA; STD; VRL; 2786 BP.
XX
AC FJ646611;
XX
DT 23-FEB-2009 (Rel. 99, Created)
DT 23-FEB-2009 (Rel. 99, Last updated, Version 1)
XX
DE Tomato yellow leaf curl virus isolate AH1, complete genome.
XX
KW .
XX
OS Tomato yellow leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2786
RA Yu W.G., Zhao T.M., Yang M.L.;
RT "Detection and Sequence Analysis of Whitefly-transmitted Geminivirus in
RT Tomato from Anhui and Shandong provinces";
RL Unpublished.
XX
RN [2]
RP 1-2786
RA Yu G.W., Zhao M.T., Yang L.M.;
RT ;
RL Submitted (19-JAN-2009) to the EMBL/GenBank/DDBJ databases.
RL Vegetable Crops, Jiangsu Academy of Agricultural Sciences, 50 Zhongling
RL Street, Nanjing, Jiangsu, China
XX
FH Key Location/Qualifiers
FH
FT source 1. .2786
FT /organism="Tomato yellow leaf curl virus"
FT /host="Lycopersicon esculentum"
FT /isolate="AH1"
FT /mol_type="genomic DNA"
FT /country="China"
FT /collection_date="Nov-2008"
FT /db_xref="taxon:10832"
FT gene 153. .503
FT /gene="AV2"
FT CDS 153. .503
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2 protein"
FT /protein_id="ACN12990.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PEAQNIQNVSKP"
FT gene 313. .1089
FT /gene="AV1"
FT CDS 313. .1089
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="ACN12989.1"
FT /translation="MSKRPGDIIISTPASKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT gene complement(1086. .1490)
FT /gene="AC3"
FT CDS complement(1086. .1490)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3 protein"
FT /protein_id="ACN12991.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNNDI
FT ISIQIRFNHNIRKALGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLYSLGVISINN
FT VIRAVDHVLYDVLENTINVTATHDIKYKFY"
FT gene complement(1231. .1638)
FT /gene="AC2"
FT CDS complement(1231. .1638)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2 protein"
FT /protein_id="ACN12992.1"
FT /translation="MQSSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI
FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEQRHHFHSDKIQPQ
FT HQEGIGDSQMFSQLPNLDDITASDWSFLKSI"
FT gene complement(1547. .2620)
FT /gene="AC1"
FT CDS complement(1547. .2620)
FT /codon_start=1
FT /gene="AC1"
FT /product="rep protein"
FT /protein_id="ACN12993.1"
FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC
FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGVFQIDSRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFSPPLEVYISPFLSSSFNQVPDELDEWVAENVVSSAARPWRPISIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDVWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNAIFVTLYEPLFA
FT SINQGPTQDSQEETNKA"
FT gene complement(2176. .2469)
FT /gene="AC4"
FT CDS complement(2176. .2469)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="ACN12994.1"
FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ
FT QMSRPTWRKTETSLILEFSKSIADQLEEVSNLPTTHMPRHSIQAVNPRPSIY"
XX
SQ Sequence 2786 BP; 759 A; 531 C; 608 G; 888 T; 0 other;
fj646611 Length: 2786 23-FEB-2009 Type: N Check: 479 ..
1 aatttttacc ttggccgcgc cttctctttt tatgtggtct ccacgagggt
51 tccacatacg tcactgtcaa ccaatcaaat tgcatcctca aacgttagat
101 aagtgttcat ttgtctttat atacttggtc cccaagtagt ctgtcttgca
151 atatgtggga tccacttcta aatgaatttc ctgaatctgt tcacggattt
201 cgttgtatgt tagctattaa atatttgcag tccgttgagg aaacttacga
251 gcccaataca ttgggccacg atttaattag ggatcttata tctgttgtaa
301 gggcccgtga ctatgtcgaa gcgaccaggc gatataatca tttccacgcc
351 cgcctcgaag gttcgccgaa ggctgaactt cgacagccca tacagcagcc
401 gtgctgctgt ccccattgtc caaggcacaa acaagcgacg atcatggacg
451 tacaggccca tgtaccggaa gcccagaata tacagaatgt atcgaagccc
501 tgatgttcct cgtggatgtg aaggcccatg taaagtccag tcttatgagc
551 aacgggatga tattaagcat actggtattg ttcgttgtgt tagtgatgtt
601 actcgtggat ctggaattac tcacagagtg ggtaagaggt tctgtgttaa
651 atcgatatat tttttaggta aagtctggat ggatgaaaat atcaagaagc
701 agaatcacac taatcaggtc atgttcttct tggttcgtga tagaaggccc
751 tatggaaaca gcccaatgga ttttggacag gtttttaata tgttcgataa
801 tgagcccagt accgcaactg tgaagaatga tttgcgggat aggtttcaag
851 tgatgaggaa atttcatgct acagttattg gtgggccctc tggaatgaag
901 gaacaggcat tagttaagag attttttaga attaacagtc atgtaactta
951 taatcatcag gaggcagcca agtatgagaa ccatactgaa aacgccttgt
1001 tattgtatat ggcatgtacg catgcctcta atccagtgta tgcaactatg
1051 aaaatacgca tctatttcta tgattcaata tcaaattaat aaaatttata
1101 ttttatatca tgagttgctg ttacatttat tgtgttttca agtacatcat
1151 acaatacatg atcaactgct ctgattacat tgttaattga aattacacca
1201 agactatata aatacttaag aacttgatat ctaaatactc ttaagaaacg
1251 accagtctga ggctgtaatg tcgtccaaat tcggaagttg agaaaacatt
1301 tgtgaatccc caatgccttc ctgatgttgt ggttgaatct tatctgaatg
1351 gaaatgatgt cgttgttcat tagaaatggc ctctggctgt gttctgttat
1401 cttgaaatag aggggattgt ttatctccca gataaaaacg ccattctctg
1451 cttgaggagc agtgatgagt tcccctgtgc gtgaatccat gattgttgca
1501 gttgatgtgg aggtagtatg agcagccaca gtctaggtct acacgcttac
1551 gccttattgg tttcttcttg gctatcttgt gttggacctt gattgatact
1601 tgcgaacagt ggctcgtaga gggtgacgaa gattgcattc ttgagagccc
1651 aatttttcaa ggatatgttt ttttcttcgt ctagatattc cctatatgag
1701 gaggtaggtc ctggattgca gaggaagata gtgggaattc cccctttaat
1751 ttgaatgggc ttcccgtact ttgtgttgct ttgccagtcc ctctgggccc
1801 ccatgaattc cttgaagtgc tttaaataat gcgggtctac gtcatcaatg
1851 acgttgtacc acacatcatt actgtacacc tttgggctta ggtctagatg
1901 tccacataaa taattatgtg ggcctagaga cctggcccac attgttttgc
1951 ctgttctgct atcaccctca atgacaatac ttatgggtct ccatggccgc
2001 gcagcggaag atacgacgtt ctcggcgacc cactcgtcaa gttcatctgg
2051 aacttgatta aaagaagaag aaagaaatgg agaaatataa acttctaaag
2101 gaggactaaa aatcctatct aaatttgaac ttaaattatg aaattgtaaa
2151 atatagtcct ttggggcctt ctcttttaat atattgaggg cctcggattt
2201 actgcctgaa ttgagtgcct cggcatatgc gtcgttggca gattgctgac
2251 ctcctctagc tgatctgcta tcgatttgga aaactccaaa atcaatgaag
2301 tctccgtctt tctccacgta ggtcttgaca tctgttgagc tcttagctgc
2351 ctgaatgttc ggatggaaat gtgctgacct gtttggggat accaggtcga
2401 agaaccgttg gttcttacat tggtatttgc cttcgaattg gataagcaca
2451 tggagatgtg gttccccatt ctcgtggagt tctctgcaaa ctttgatgta
2501 ttttttattt gttggggttt ctaggttttt taattgggaa agtgcttcct
2551 ctttagagag agaacaattg ggatatgtta ggaaataatt tttggcatat
2601 attttaaata aacgaggcat gttgaaatga attggtgtcc ctcaaagctc
2651 tatggcaatc ggtgtatcgg tgtcttactt atacctggac tactaatggc
2701 tatttggtaa ttttgtaaaa gcacattgca attcaacatt caaaattcaa
2751 aaatcaaatc aataaagcgg ccatccgtac aatatt