Sequence of DPV Tomato leaf curl Palampur virus
Tomato leaf curl Palampur virus isolate IR:Kah:T9P:Cuc:07 segment DNA-B, complete sequence.
ACC No: FJ660424
Dated: 2009-10-08 | Length: 2719 | CRC: 1408375053
ID FJ660424; SV 1; circular; genomic DNA; STD; VRL; 2719 BP.
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AC FJ660424;
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DT 23-MAR-2009 (Rel. 100, Created)
DT 08-OCT-2009 (Rel. 102, Last updated, Version 2)
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DE Tomato leaf curl Palampur virus isolate IR:Kah:T9P:Cuc:07 segment DNA-B,
DE complete sequence.
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KW .
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OS Tomato leaf curl Palampur virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2719
RX PUBMED; 19424773.
RA Heydarnejad J., Mozaffari A., Massumi H., Fazeli R., Gray A.J.,
RA Meredith S., Lakay F., Shepherd D.N., Martin D.P., Varsani A.;
RT "Complete sequences of tomato leaf curl Palampur virus isolates infecting
RT cucurbits in Iran";
RL Arch. Virol. 154(6):1015-1018(2009).
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RN [2]
RP 1-2719
RA Heydarnejad J., Mozaffari A., Massumi H., Fazeli R., Gray A., Meredith S.,
RA Lakay F., Shepherd D.N., Martin D.P., Varsani A.;
RT ;
RL Submitted (25-JAN-2009) to the EMBL/GenBank/DDBJ databases.
RL Plant Protection Department, Shahid Bahonar University of Kerman, 22 Bahman
RL Ave., Kerman 7616914111, Iran
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FH Key Location/Qualifiers
FH
FT source 1. .2719
FT /organism="Tomato leaf curl Palampur virus"
FT /segment="DNA-B"
FT /host="Cucumis sativus L."
FT /isolate="IR:Kah:T9P:Cuc:07"
FT /mol_type="genomic DNA"
FT /country="Iran:Kahnooj"
FT /collection_date="2007"
FT /db_xref="taxon:526476"
FT gene 426. .1232
FT /gene="BV1"
FT CDS 426. .1232
FT /codon_start=1
FT /gene="BV1"
FT /product="nuclear shuttle protein"
FT /db_xref="InterPro:IPR001530"
FT /db_xref="UniProtKB/TrEMBL:C0L6A6"
FT /protein_id="ACN77063.1"
FT /translation="MAFPSPYTTPRRSGLSYARRFNGSRNVRFWKFRKSQPWLRRRSNE
FT AFSRSATELFGEPISKQYTRKEICETQQGTEYVLQNNRYMTSYVTYPSKTRTGTNNRVR
FT SYIKLKSLNISGTFAIRSTDMMTEVDQGGGLYGVMSVVVVRDKSPKIYSTAQPLIPFVD
FT IFGSVNACRGTLKVAERHRDRFVVLNQSSIIVNTPHINTMKKFCIRNCIPKTYTTWVTF
FT RDEEEDNCTGLYSNTLRNAILIYYVWLSDVPSQVDLYSNIILNYIG"
FT gene complement(1298. .2143)
FT /gene="BC1"
FT CDS complement(1298. .2143)
FT /codon_start=1
FT /gene="BC1"
FT /product="movement protein"
FT /db_xref="InterPro:IPR000211"
FT /db_xref="UniProtKB/TrEMBL:C0L6A5"
FT /protein_id="ACN77064.1"
FT /translation="MSIRNEREGLSVGGYVQSERVEYALTNDAAEVKLMFPSMFEQKIS
FT QLRNRCMKIDHVVLEYRNQVPINAVGHVVIEIHDMRLTEGDTKQAEFTIPIKCNCNLHY
FT YSSSYFSLKDCNPWRVEYRVENTNVVNGVHFCKMLGKLKLSSAKHSTDVEFRPPKIEIQ
FT SKEFTLNDIDFWSVGSKPQTRRLVDGSRLIGHSSRSLRVPYLTIGPNESWASRSEIGHS
FT SVSSRPYKNLSGLDDSAIDPGPSASQTGSITREEIADIITKTVEQCIKSNVNAPLSKGV
FT "
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SQ Sequence 2719 BP; 780 A; 561 C; 506 G; 872 T; 0 other;
fj660424 Length: 2719 08-OCT-2009 Type: N Check: 6519 ..
1 accgaaaggc cccgtttcct tggcgcttca tcttagccgt tcttttttgc
51 atgccttata attctaacgg ctctacctgt aacacgtgtc tatatggcag
101 gctttattca tttaaagcct tagcccgcgt cttagtggtg cgcattgtct
151 tccattcatt aaagcttatt tattactttt atatggtccc atgcgctatt
201 aaaagtagtt caataattca aaatgcactg acaacgtttc tttttattga
251 tcggccaaga tcaatcggta attgctacga aatttccacc cgtcggatta
301 aagagttatg ctttaattca aacattaatt gtttgaattt tatgcgtccc
351 tccatttgcc taatttctct ttatataccc taccatatat ctatatctat
401 ttaggttctt tgcgtcttta tctaaatggc ttttccttct ccttatacca
451 cccctcgtcg ttctggttta tcctatgcgc gacggttcaa cggaagcagg
501 aacgtcagat tctggaaatt ccgtaaatct caaccatggt tacgccgacg
551 ctcaaatgaa gcgttttcca gatccgccac tgaactgttt ggagagccaa
601 tctccaaaca atatacgcga aaagaaatct gtgaaacaca acagggaacg
651 gaatatgttt tgcagaacaa cagatacatg acctcctacg taacatatcc
701 ctcgaaaact agaacgggaa cgaacaaccg agttcgttct tacatcaagt
751 taaagagcct gaacatatct ggaacatttg ccattcgcag tactgacatg
801 atgactgaag tagaccaggg tggtggttta tatggtgtga tgtcagtagt
851 tgtagttaga gataaatcgc ctaagattta ttccactgca caaccattaa
901 ttccatttgt tgatatattc ggatcggtaa acgcgtgccg gggaacattg
951 aaagtggcgg aacgccaccg tgatagattc gtagttttga atcagtcgtc
1001 cataatagtt aatactccgc atattaacac tatgaaaaaa ttctgcattc
1051 gcaattgcat cccaaaaacc tatactactt gggtcacttt ccgcgacgaa
1101 gaagaggaca actgcactgg attatactcc aatactttgc gaaatgctat
1151 ccttatttat tatgtatggt taagcgacgt accctctcaa gtcgatttgt
1201 atagtaatat aattcttaat tatattggtt aaagtaatgt attaaacatg
1251 aataatgcac tcgtaatgca aaagtaataa atttgacata aaatttatta
1301 gacgcccttt gaaagtggtg catttacatt cgattttata cattgttcta
1351 cagttttcgt tattatatct gcaatttctt ccctcgtaat acttcctgtt
1401 tgtgacgccg aaggcccagg atcgattgcg gaatcgtcca gtccgcttaa
1451 gttcttgtaa ggtctgctgc tgacggacga atgtccgatc tctgatctgc
1501 tagcccatga ttcgttcgga cctatcgtca gatatggtac tcttaacgat
1551 ctagaactgt gtccgattaa tcttgaacca tccaccagac gtcttgtctg
1601 tggtttcgaa cccacagacc agaaatcaat atcgtttaat gtgaattcct
1651 tgctttgtat ttcaattttt ggtggtcgga attcgacgtc agtcgaatgt
1701 tttgccgagg atagtttcaa tttacccaac attttgcaga agtggactcc
1751 attaacgacg ttggtgtttt ccactctgta ttcaaccctc caaggattac
1801 aatccttgag cgagaagtaa gacgaagagt agtagtgcag gttacaattg
1851 catttgatcg gaatagtgaa ctcagcctgt ttcgtgtccc cttccgtcaa
1901 cctcatgtcg tgtatttcaa tcacgacatg tccaactgca ttaattggta
1951 cctgattgcg gtattctaaa acgacgtgat caattttcat gcatctgttt
2001 cgtaattggc ttattttctg ctcgaacatc gacggaaaca ttaatttgac
2051 ctctgcagca tcgtttgtga gcgcgtactc aacacgttct gactgaacgt
2101 atcctcccac ggacaaaccc tctctttcat ttcttattga catattggaa
2151 gcgcagcgga aatgtagcgc agctgatatg cagtaaaacc tgcgaataaa
2201 aaatacttaa tagttgagag aggaaagccg atgctaaaat caacgaagtt
2251 gtattttttt agcaatgacg aacattgttt tataatgcct ctagagtcat
2301 gtcgtaatca aatcaaacaa acgcaaatgg acggcacgga tattatgaag
2351 caaaatctat tgtgtctatg caactttagt gaattatggt ttctctatat
2401 tttcttgaat ttcagaaacc ataaattgag aacaattttt gagaaggctg
2451 caatatatgt atttggctta aaaaatggaa gcccatttcg acaagcccaa
2501 ttgtaattgt gcacttctta tataaaacga caaagtttta aagttgcaaa
2551 agtaagtgtg tctagagaga agtcagtctt tctctctcta aaatccatcc
2601 ggtgtctctc aacttcttgt attatattgg tgtctggggt cctatatata
2651 cttaaaaccc taaatggcat acatgtaaat ttagagagaa ctactaaggg
2701 gcctttcgta tataatatt