Sequence of DPV Tomato leaf curl Palampur virus
Tomato leaf curl Palampur virus isolate IR:Jir4:T6P:Cuc:07 segment DNA-B, complete sequence.
ACC No: FJ660429
Dated: 2009-10-08 | Length: 2719 | CRC: 73564373
ID FJ660429; SV 1; circular; genomic DNA; STD; VRL; 2719 BP.
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AC FJ660429;
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DT 23-MAR-2009 (Rel. 100, Created)
DT 08-OCT-2009 (Rel. 102, Last updated, Version 2)
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DE Tomato leaf curl Palampur virus isolate IR:Jir4:T6P:Cuc:07 segment DNA-B,
DE complete sequence.
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KW .
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OS Tomato leaf curl Palampur virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2719
RX PUBMED; 19424773.
RA Heydarnejad J., Mozaffari A., Massumi H., Fazeli R., Gray A.J.,
RA Meredith S., Lakay F., Shepherd D.N., Martin D.P., Varsani A.;
RT "Complete sequences of tomato leaf curl Palampur virus isolates infecting
RT cucurbits in Iran";
RL Arch. Virol. 154(6):1015-1018(2009).
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RN [2]
RP 1-2719
RA Heydarnejad J., Mozaffari A., Massumi H., Fazeli R., Gray A., Meredith S.,
RA Lakay F., Shepherd D.N., Martin D.P., Varsani A.;
RT ;
RL Submitted (25-JAN-2009) to the EMBL/GenBank/DDBJ databases.
RL Plant Protection Department, Shahid Bahonar University of Kerman, 22 Bahman
RL Ave., Kerman 7616914111, Iran
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FH Key Location/Qualifiers
FH
FT source 1. .2719
FT /organism="Tomato leaf curl Palampur virus"
FT /segment="DNA-B"
FT /host="Cucumis sativus L."
FT /isolate="IR:Jir4:T6P:Cuc:07"
FT /mol_type="genomic DNA"
FT /country="Iran:Jiroft"
FT /collection_date="2007"
FT /db_xref="taxon:526476"
FT gene 426. .1232
FT /gene="BV1"
FT CDS 426. .1232
FT /codon_start=1
FT /gene="BV1"
FT /product="nuclear shuttle protein"
FT /db_xref="InterPro:IPR001530"
FT /db_xref="UniProtKB/TrEMBL:C0L6B6"
FT /protein_id="ACN77073.1"
FT /translation="MAFPCPYTTPRRSGLSYARRFNGSRNVRFWKFRKSQPWLRRRSNE
FT AFSRSATELFGEPISKQYTRKEICETQQGTEYVLQNNRYMTSYVTYPSKTRTGTNNRVR
FT SYIKLKSLNISGTFAIRSTQMMTEVDQGGGLYGVMSVVVVRDKSPKIYSTAQPLIPFVD
FT IFGSVKACRGTLKVAERHRDRFVVLNQSSIIVNTPHINTMKKFCIRNCIPKTYTTWVTF
FT RDEEEDNCTGLYSNTLRNAILIYYVWLSDVPSQVDLYSNIILNYIG"
FT gene complement(1298. .2143)
FT /gene="BC1"
FT CDS complement(1298. .2143)
FT /codon_start=1
FT /gene="BC1"
FT /product="movement protein"
FT /db_xref="InterPro:IPR000211"
FT /db_xref="UniProtKB/TrEMBL:C0L6B7"
FT /protein_id="ACN77074.1"
FT /translation="MSIRNEREGLSVGGYVQSERIEYALTNDAAEVKLMFPSMFEQKIS
FT QLRNRCMKIDHVVLEYRNQVPINAVGHVVIEIHDMRLTEGDTKQAEFTIPIKCNCNLHY
FT YSSSYFSLKDCNPWRVEYRVENTNVVNGVHFCKMFGKLKLSSAKHSTDVEFRPPKIEIQ
FT SKEFTLNDIDFWSVGSKPQTRRLVDGSRLIGHSSRSLRVPYLTIGPNESWASRSEIGHS
FT SVSSRPYKNLSGLDDSAIDPGPSASQTASITRDKIADIITKTVEQCIKSNVNAPLSKGV
FT "
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SQ Sequence 2719 BP; 780 A; 562 C; 518 G; 859 T; 0 other;
fj660429 Length: 2719 08-OCT-2009 Type: N Check: 1466 ..
1 accgaaaggc cccgtttcct tggcgcttca tcttagccgt tctttgttgc
51 atgccttata attctaacgg ctctacctgt aacacgtgtc tatatggcag
101 gctttattca tttaaagcct tagcccgcgt cttagtggtg cgcattgtcc
151 tccattcagt aaagcttatt tattactttt atatggtccc atgcgctatt
201 aaaagtagtt caataattca aaatgcactg acaacgtttc tttttattga
251 tcggccaaga tcaatcggta attactacga aatttccacc cgtcggatta
301 aagagttatg ctttaattca aacattaatt gtttgaattt cacgcgtccc
351 tccagttgcc taatttctct ttatataccc taccatatat ctatatctgt
401 ttaggttctt tgcgtcttga tctaaatggc ttttccttgt ccttatacca
451 cccctcgtcg ttctggatta tcctatgcgc gacggttcaa cggaagcaga
501 aacgtcagat tctggaaatt ccgtaaatct caaccatggt tacgccgacg
551 ctcaaacgaa gcgttttcca gatccgccac tgaactgttt ggagagccaa
601 tctccaaaca atatacgcgt aaagaaatct gtgaaacaca acagggaacg
651 gaatatgttt tgcagaacaa cagatacatg acctcctacg taacatatcc
701 ctcgaaaact agaacgggaa cgaacaaccg agttcgttct tacatcaagt
751 taaagagcct gaacatatct ggaacatttg ccattcgcag tactcaaatg
801 atgactgaag tagaccaggg tggtggttta tatggtgtga tgtcagtagt
851 tgtagttaga gataaatcgc ctaagattta ttccactgca caaccattaa
901 ttccatttgt tgatatattc ggatcggtaa aggcgtgccg gggaacattg
951 aaggtggcgg aacgccaccg tgatagattc gtagttttga atcagtcgtc
1001 cataatagtt aatactccgc atattaacac aatgaaaaaa ttctgcattc
1051 gcaattgcat cccaaaaacc tatactactt gggtcacgtt ccgcgacgaa
1101 gaagaggaca actgcactgg attatactcc aatactttgc gaaatgctat
1151 ccttatttat tatgtatggt taagcgacgt accctctcaa gtcgatttgt
1201 atagtaatat aattcttaat tatattggtt aaattaatgt attaaacatg
1251 aataatgcac tcgtaatgca aaagtaataa atttgacata aaatttatta
1301 gacgcccttt gaaagtggtg catttacatt cgattttata cattgttcta
1351 cagttttcgt aattatatct gcaattttat ccctcgtaat actggctgtt
1401 tgtgacgccg acggcccagg atcgattgcg gaatcgtcca gtccgcttaa
1451 gttcttgtaa ggtctgctgc tgacggacga atgtccgatc tctgatctgc
1501 tagcccatga ttcgttcgga cctatcgtca gatatggtac tcttaacgat
1551 ctagaactgt gtccgattaa tcttgaacca tccaccagac gtcttgtctg
1601 tggtttcgaa cccacagacc agaaatcaat atcgtttagt gtgaattcct
1651 tgctttgtat ttcaattttt ggtggtcgga attcgacgtc agtcgaatgt
1701 tttgccgagg atagtttcaa tttaccaaac attttgcaga agtggactcc
1751 attaacgacg ttggtgtttt ccactctgta ttcaaccctc caaggattac
1801 aatccttgag cgagaagtaa gaggaagagt agtagtgcag gttacaattg
1851 catttgatcg gaatagtgaa ctcagcctgt ttcgtgtccc cttccgtcaa
1901 cctcatgtcg tgtatttcaa tcacgacatg tccaactgca ttaattggta
1951 cctgattgcg gtattctaaa acgacgtgat caattttcat gcatctgttt
2001 cgtaattggc ttattttctg ctcgaacatc gacggaaaca ttaatttgac
2051 ctctgcagca tcgtttgtga gcgcgtactc aatacgttct gactgaacgt
2101 accctcccac ggacaaaccc tctctttcat ttcttattga catattggaa
2151 gcgcagcgga aatggagcgc agcggatatg cagtaaaacc tgcgagtaaa
2201 aaatacctaa tagttgagag aggaaagccg atgctaaaat caacgaagtt
2251 gtattttttt agcaatgacg aacattgttt tataatgcct gtagagtcat
2301 gtcgtaatca aatcaaacaa acgcaaatgg acggcacaga tattatgaag
2351 caaactctat tgtgtctatg caactttagt gaattatggt ttctctatat
2401 tttcttgaat ttcagaaacc ataaattgag aacaattttt cagaaggctg
2451 caatatatgt attttggcaa aaaaatggaa gcccatttcg acaagcccaa
2501 ttgtaattgt gcacttcttt ttttaaacga caacgtttta aagttgcaaa
2551 agtaagtgtg tctagagaga agtcagactt tctctctcta aaatccatcc
2601 ggtgtctctc aacttcttgt attatattgg tgtctggggt cctatatata
2651 cttagaaccc taaatggcat aaatgtaaat ttagagagaa ctactaaggg
2701 gcctttcgta tataatatt