Sequence of DPV Tomato leaf curl Palampur virus
Tomato leaf curl Palampur virus isolate IR:Jir3:T4P:Cuc:07 segment DNA-B, complete sequence.
ACC No: FJ660430
Dated: 2009-10-08 | Length: 2719 | CRC: -84660939
ID FJ660430; SV 1; circular; genomic DNA; STD; VRL; 2719 BP.
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AC FJ660430;
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DT 23-MAR-2009 (Rel. 100, Created)
DT 08-OCT-2009 (Rel. 102, Last updated, Version 2)
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DE Tomato leaf curl Palampur virus isolate IR:Jir3:T4P:Cuc:07 segment DNA-B,
DE complete sequence.
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KW .
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OS Tomato leaf curl Palampur virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2719
RX PUBMED; 19424773.
RA Heydarnejad J., Mozaffari A., Massumi H., Fazeli R., Gray A.J.,
RA Meredith S., Lakay F., Shepherd D.N., Martin D.P., Varsani A.;
RT "Complete sequences of tomato leaf curl Palampur virus isolates infecting
RT cucurbits in Iran";
RL Arch. Virol. 154(6):1015-1018(2009).
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RN [2]
RP 1-2719
RA Heydarnejad J., Mozaffari A., Massumi H., Fazeli R., Gray A., Meredith S.,
RA Lakay F., Shepherd D.N., Martin D.P., Varsani A.;
RT ;
RL Submitted (25-JAN-2009) to the EMBL/GenBank/DDBJ databases.
RL Plant Protection Department, Shahid Bahonar University of Kerman, 22 Bahman
RL Ave., Kerman 7616914111, Iran
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FH Key Location/Qualifiers
FH
FT source 1. .2719
FT /organism="Tomato leaf curl Palampur virus"
FT /segment="DNA-B"
FT /host="Cucumis sativus L."
FT /isolate="IR:Jir3:T4P:Cuc:07"
FT /mol_type="genomic DNA"
FT /country="Iran:Jiroft"
FT /collection_date="2007"
FT /db_xref="taxon:526476"
FT gene 426. .1232
FT /gene="BV1"
FT CDS 426. .1232
FT /codon_start=1
FT /gene="BV1"
FT /product="nuclear shuttle protein"
FT /db_xref="InterPro:IPR001530"
FT /db_xref="UniProtKB/TrEMBL:C0L6B0"
FT /protein_id="ACN77075.1"
FT /translation="MAFPSPYTTPRRSGLSYARRFNGSRNVRFWKFRKSQPWLRRRSNE
FT GFSRSATELFGEPISKQYTRKEICETQQGTEYVLQNNRYMTSYVTYPSKTRTGTNNRVR
FT SYIKLKSLNISGTFAIRSTEMMTEVDQGGGLYGVMSVVVVRDKSPKIYSTAQPLIPFVD
FT IFGSVNACRGTLKVAERHCDRFVVLNQSSIIVNTPHINTIKKFCIRNCIPKTYTTWVTF
FT RDEEEDNCTGLYSNTLRNAILIYYVWLSDVPSQVDLYSNLILNYIG"
FT gene complement(1298. .2143)
FT /gene="BC1"
FT CDS complement(1298. .2143)
FT /codon_start=1
FT /gene="BC1"
FT /product="movement protein"
FT /db_xref="InterPro:IPR000211"
FT /db_xref="UniProtKB/TrEMBL:C0L6B9"
FT /protein_id="ACN77076.1"
FT /translation="MSIRNESEGLSVGGYVQSERIEYALTNDAAEVKLMFPSMFEQKIS
FT QLRNRCMKIDHVVLEYRNQVPINAVGHVVIEIHDMRLTEGDTKQAEFTIPIKCNCNLHY
FT YSSSYFSLKDVNPWRVEYRVENTNVVNGVHFCKMLGKLKLSSAKHSTDVEFRPPKIEIQ
FT SKEFTLNDIDFWSVGSKPQTRRLVDGSRLIGHSSRSLRVPYLTIGPNESWASRSEIGHS
FT SVSSRPYKNLSGLDDSAIDPGPSASQTGSITRDEIADIITKTVEQCIKSNVNAPLSKGV
FT "
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SQ Sequence 2719 BP; 783 A; 560 C; 512 G; 864 T; 0 other;
fj660430 Length: 2719 08-OCT-2009 Type: N Check: 2818 ..
1 accgaaaggc cccgtttcct tggcgcttca tcttagccgt tcttttttac
51 atgccttata attctaacgg ttctacctgt aacacgtgtg tatatggcag
101 gctttattca tttaaagcct tagcccgcgt tttagtggtg cgcatcgtcc
151 tccattgaat aaagcttatt tattactttt atatggtccc atgcgctatt
201 aaaagaagtt caataattca aaatgcactg acaacgtctc tttttattga
251 tcggccaaga tcaatcggta attgctacga aatttccacc cgtcggatta
301 aagagttatg cttcaattca aacattaatt gtttgaattt tatgcgtccc
351 tccatgtgcc taatttccct ttatataccc taccatatat ctatatctgt
401 ttaggttctt tgcgtcttta tctaaatggc ttttccttct ccttatacca
451 cccctcgtcg gtctggttta tcctatgcgc gacggttcaa cggaagcaga
501 aacgtcagat tttggaaatt ccgtaaatct caaccatggt tacgccgacg
551 ctcaaatgaa gggttttcca gatccgccac tgaactgttt ggagagccaa
601 tctccaaaca atatacgcgt aaagaaatct gtgaaacaca acagggaacg
651 gaatatgttt tgcagaacaa cagatacatg acctcctacg taacatatcc
701 ctcgaaaact agaacgggaa cgaacaaccg agttcgttct tacatcaagt
751 taaaaagcct gaacatatct ggaacatttg ccattcgcag tactgaaatg
801 atgacggaag tagaccaggg tggtggttta tatggtgtga tgtcagtagt
851 tgtagttaga gataaatcgc ctaagattta ttccactgca caaccattaa
901 ttccatttgt tgatatattc ggatcggtaa acgcgtgccg gggaacattg
951 aaagtggcgg aacgccactg tgatagattc gtagttttga atcagtcttc
1001 cataatagtt aatactccgc atattaacac tattaaaaaa ttctgcattc
1051 gcaattgcat cccaaaaacc tatactactt gggtcacgtt ccgcgacgaa
1101 gaagaggaca actgcactgg actatactcc aatactttgc gaaatgctat
1151 ccttatttat tatgtatggt taagcgacgt accctctcaa gtcgatttgt
1201 atagtaattt aatccttaat tatattggtt aaattaatgt attaaacatg
1251 aataacgcac tcgtaatgca aaagtaataa atttgacata aaaattatta
1301 tacgcccttt gaaagtggtg catttacatt cgattttata cattgttcta
1351 cagttttcgt aattatatct gcaatttcgt ccctcgtaat acttcctgtt
1401 tgtgacgccg aaggcccagg atcgattgcg gaatcgtcca gtccgcttaa
1451 gttcttgtaa ggtctgctgc tgacggacga atgtccgatc tctgatctgc
1501 tagcccatga ttcgttcgga cctatcgtca gatatggtac tcttaacgat
1551 ctagaactgt gtccgattaa tcttgaacca tccaccagac gtcttgtctg
1601 tggtttcgaa cccacagacc agaaatcaat gtcgtttaat gtgaattcct
1651 tgctttgtat ttcaattttt ggtggtcgga attcgacgtc agtcgaatgt
1701 tttgccgagg atagtttcaa tttacccaac attttgcaga agtgtactcc
1751 attaacgacg ttggtgtttt ccactctgta ttcaaccctc caaggattaa
1801 catccttgag cgagaagtaa gacgaagagt agtagtgcag gttacaattg
1851 catttgatgg gaatagtgaa ctcagcctgt ttcgtgtctc cttccgtcaa
1901 cctcatgtcg tgtatttcaa tcacgacatg tccaactgca ttaattggta
1951 cctgattgcg gtattctaaa acgacgtgat caattttcat gcatctgttt
2001 cgtaattggc ttattttctg ctcgaacatc gacggaaaca ttaatttgac
2051 ctctgcagca tcgtttgtga gcgcgtactc aatacgttct gactgaacgt
2101 accctcccac ggacaaaccc tcgctttcat ttcttattga catattggaa
2151 gcgcatcaaa tagggagcgc agtggatatg cagtaaaacc tgcgaataaa
2201 aaatactgaa tagttgaggg aggaaaggca atgctaaaat caacgaagtt
2251 gtattttctt agcaatgacg aacatagttt tataatgcct ctagagtcat
2301 gtcgtaatca aatcaaacaa acgcaaatgg acggcacaga ttttatgaag
2351 taaaatctat tgtgtgtatg caactttagt gacttatggc ttctctatat
2401 tttctcgaat ttgagaatcc ataaatggag aacaatttat gacaagtctg
2451 caatatatgg attttgctaa aaaaatggga gcccattccg acaagcccaa
2501 ttgtaattgt gcacttcttt tttaaaacga catcgtttta aagttgcaaa
2551 agttagtgtg tatagagaga agtcagactt tctctctcta aaatccatcc
2601 ggtgtctctc aacttcttgt attatattgg tgtctggggt cctatatata
2651 cttaaaaccc taaatggcat aaatgtaaat ttacagagaa ctactaaggg
2701 gcctttcgta tataatatt