Sequence of DPV Tomato leaf curl Palampur virus
Tomato leaf curl Palampur virus isolate IR:Jir6:T3X:Cuc:07 segment DNA-A, complete sequence.
ACC No: FJ660441
Dated: 2009-10-08 | Length: 2756 | CRC: 897403464
ID FJ660441; SV 1; circular; genomic DNA; STD; VRL; 2756 BP.
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AC FJ660441;
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DT 23-MAR-2009 (Rel. 100, Created)
DT 08-OCT-2009 (Rel. 102, Last updated, Version 2)
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DE Tomato leaf curl Palampur virus isolate IR:Jir6:T3X:Cuc:07 segment DNA-A,
DE complete sequence.
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KW .
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OS Tomato leaf curl Palampur virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2756
RX PUBMED; 19424773.
RA Heydarnejad J., Mozaffari A., Massumi H., Fazeli R., Gray A.J.,
RA Meredith S., Lakay F., Shepherd D.N., Martin D.P., Varsani A.;
RT "Complete sequences of tomato leaf curl Palampur virus isolates infecting
RT cucurbits in Iran";
RL Arch. Virol. 154(6):1015-1018(2009).
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RN [2]
RP 1-2756
RA Heydarnejad J., Mozaffari A., Massumi H., Fazeli R., Gray A., Meredith S.,
RA Lakay F., Shepherd D.N., Martin D.P., Varsani A.;
RT ;
RL Submitted (25-JAN-2009) to the EMBL/GenBank/DDBJ databases.
RL Plant Protection Department, Shahid Bahonar University of Kerman, 22 Bahman
RL Ave., Kerman 7616914111, Iran
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FH Key Location/Qualifiers
FH
FT source 1. .2756
FT /organism="Tomato leaf curl Palampur virus"
FT /segment="DNA-A"
FT /host="Cucumis sativus L."
FT /isolate="IR:Jir6:T3X:Cuc:07"
FT /mol_type="genomic DNA"
FT /country="Iran:Jiroft"
FT /collection_date="2007"
FT /db_xref="taxon:526476"
FT gene 120. .467
FT /gene="AV2"
FT CDS 120. .467
FT /codon_start=1
FT /gene="AV2"
FT /product="precoat protein"
FT /db_xref="GOA:C0L6C0"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:C0L6C0"
FT /protein_id="ACN77049.1"
FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKTYSPDTIGYDLVRDL
FT ISVVRARNYGEASSRYLHFNARIESTPSSELRQPVCCPCSCPYCPRHKGKGMGEQTHEP
FT ETKILPDVSKL"
FT gene 280. .1050
FT /gene="AV1"
FT CDS 280. .1050
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="GOA:C0L6D3"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:C0L6D3"
FT /protein_id="ACN77050.1"
FT /translation="MVKRPADIYISTPASKARRRLNFDSPYAVRAAVPIVRATKAREWV
FT NRPMNRKPRFYRMYRSSDVPRGCEGPCKVQSFESRHDVSHIGKVMCISDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGDVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHSTVTGGTYASKEQALVRRFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHYSNPVYATLKIRIYFYDSVTN"
FT gene complement(1047. .1457)
FT /gene="AC3"
FT CDS complement(1047. .1457)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:C0L6C2"
FT /protein_id="ACN77051.1"
FT /translation="MITDSRTGEYITADRAESGVYIWDVPNPLYFKILKHDERPCLTNH
FT DIITVQIQFNHNLRKALGLHKCFLTFQIWTGLRPQTGRFLRVFRTQVLKYLDMLGVVGI
FT NNVIRAAYHVLDNVLQRTVDVWATYDVKLNTY"
FT gene complement(1177. .1596)
FT /gene="AC2"
FT CDS complement(1177. .1596)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2 protein"
FT /db_xref="GOA:C0L6H9"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:C0L6H9"
FT /protein_id="ACN77052.1"
FT /translation="MQSSLHSRDHSIPVVKTSLPKKKKKNIRRRRVDLQCGCSYYISIN
FT CHDHGFTHRGIHHCGSSREWRLYLGRSKSPVFQNFETRRETLPHEPRHYNSPNTVQPQP
FT EESTGASQVFSNIPDLDGLTPSDWAFFESFQNPGP"
FT gene complement(1499. .2602)
FT /gene="AC1"
FT CDS complement(1499. .2602)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /db_xref="GOA:C0L6I0"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:C0L6I0"
FT /protein_id="ACN77053.1"
FT /translation="MAPPTRFRINAKNYFLTYPKCSLTKEEALSQLQNLETPTSKKFIK
FT ICREFHEDGSPHIHVLIQFEGKFQCKNNRFFDLVAPSRSAHFHPNIQGAKSASDVKTYI
FT EKDGDKLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDDALKVLKELAPKDYVLQFH
FT NLMTNLDRIFPSRIEVYRSPFNVSSFDRVPPELVDWVSSNLRCSAARPFSAALPIRPIG
FT LVLEGDSRTGKTMWARSLGPHNYLCGHLDLNPRVYSNDALYNVIDDVDPHYLKHFKEFM
FT GAQRDWQSNTKYGKPIMIKGGIPTIFLCNKGPQSSYKEFLDEEKNAALKQWALKNAVFI
FT TLEGPLYSGRENVAPQEEEEEHPQETS"
FT gene complement(2269. .2445)
FT /gene="AC4"
FT CDS complement(2269. .2445)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:C0L6I1"
FT /protein_id="ACN77054.1"
FT /translation="MGLRISMFSSNLKENSSAKIIDSSTWLPQVGQHISIRTFRELNQR
FT QMSRHTSRKTETN"
XX
SQ Sequence 2756 BP; 735 A; 584 C; 609 G; 828 T; 0 other;
fj660441 Length: 2756 08-OCT-2009 Type: N Check: 1535 ..
1 accgaatggc cgcggtgcct tttgtgtggg tccagaacca atgaaattcg
51 agatacatgg ctaatttaat gcgtggggac caataaatag acttccgcac
101 caagtttgga tccacaaaca tgtgggatcc attattgcac gaatttcctg
151 aaagcgttca tggtcttagg tgcatgctag ctgtaaaata tctccaagag
201 attgaaaaga cctattctcc ggacacaatc ggatacgatc ttgttcgtga
251 cctaatctct gtcgtccgtg cgagaaacta tggtgaagcg tccagcagat
301 atctacattt caacgcccgc atcgaaagca cgccgtcgtc tgaacttcga
351 cagcccgtat gctgtccgtg cagctgtccc tattgtccgc gccacaaagg
401 caagggaatg ggtgaacaga cccatgaacc ggaaaccaag attttaccgg
451 atgtatcgaa gctctgacgt gcccaggggc tgtgaaggcc catgtaaggt
501 gcaatctttt gagtccaggc acgatgtctc tcatattggt aaagtcatgt
551 gtattagcga cgttacccgt ggaaccggtc tcacacatcg cgtcggaaaa
601 cgattttgtg tgaagtcagt ctacgttctg ggtaagatct ggatggatga
651 gaatattaag accaagaacc acacgaatag tgtgatgttt ttcttggtgc
701 gtgatcgtcg acctacgggt gcgcctcaag atttcggcga tgtgttcaat
751 atgttcgaca atgaacctag cactgctact gtgaagaata tgcatcgtga
801 tcgatatcaa gttctcagaa aatggcattc gactgtgacg ggaggaacat
851 acgcttcgaa ggaacaagca ttagttagac gttttgttag ggttaataat
901 tatgttgtct ataatcaaca agaggccggc aagtatgaga atcatactga
951 aaatgcatta atgttgtata tggcctgtac tcattattca aatcctgtgt
1001 atgcgacttt aaaaatccgg atctattttt acgattcggt gacaaattaa
1051 tatgtattaa gttttacatc atatgttgcc catacatcaa ctgttctttg
1101 caatacattg tctaatacat gataagctgc tcttattaca ttattaattc
1151 caacaacacc taacatatcc aggtacttaa ggacctgggt tctgaaaact
1201 ctcaaaaaac gcccagtctg agggcgtaag cccgtccaga tctggaatgt
1251 tagaaaacac ttgtgaagcc ccagtgcttt cctcaggttg tggttgaact
1301 gtatttggac tgttataatg tcgtggttcg tgaggcaagg tctctcgtcg
1351 tgtttcaaaa ttttgaaata caggggattt ggaacgtccc agatatagac
1401 gccactctct gctcgatccg cagtgatgta ttcccctgtg cgtgaatccg
1451 tgatcatggc agttgatcga tatgtaatag gaacaaccac actgcaaatc
1501 aactcgtctc ctgcggatgt tcttcttctt cttcttgggg agcgacgttt
1551 tcacgaccgg aatagagtgg tccctcgagt gtaatgaaga ctgcattttt
1601 caatgcccac tgtttcagtg ctgcattctt ttcttcgtct aagaattctt
1651 tatagctgct ttgtggtcct ttattgcaca agaagatagt gggaataccg
1701 cctttaatca ttatcggctt tccgtatttt gtgttgcttt gccagtcacg
1751 ctgggccccc atgaattctt taaaatgctt tagataatgg ggatcaacgt
1801 catcaatgac gttgtataaa gcgtcgttac tgtaaaccct agggtttaga
1851 tccaagtgac cgcacaagta attgtggggt cccaaactac gcgcccacat
1901 agttttgccc gtacgactat cgccctccaa tactaaccct atgggtctaa
1951 ttggtagcgc agcggaaaaa ggccgcgcag cggaacacct cagatttgac
2001 gacacccaat cgacgagttc tggcggaact ctgtcgaagg acgaaacatt
2051 aaatggcgaa cgataaactt caattcgtga cggaaagatc cgatctaaat
2101 tcgtcattaa attgtgaaac tgcaacacat aatcttttgg tgctaattct
2151 tttagcacct ttaatgcatc atctttattt ccagtgttaa ttgcttgtgc
2201 gtaagcatca ttagctgttt gttgaccacc acgagcagat cgtccgtcga
2251 tctgaaaaac accccactct agtttgtctc cgtctttctc gatgtatgtc
2301 ttgacatctg acgctgattt agctccctga atgttcggat ggaaatgtgc
2351 tgaccgactt ggggcaacca agtcgaagaa tctattattt ttgcactgga
2401 attttccttc aaattggatg agaacatgga tatgcggaga cccatcttcg
2451 tgaaactctc tgcagatttt tatgaatttc tttgatgtag gggtttctag
2501 gttttgtaat tgggaaagtg cctcttcttt agttagagag cactttggat
2551 atgtaaggaa atagtttttt gcatttattc tgaaacgagt tggcggagcc
2601 atagacctcg aatttccaac cggtgtctct caacttcttg tattatattg
2651 gtgtctgggg tcctatatat acataagacc cttaatggca atattgtaat
2701 tttagggata aaattacttt aatttaaact cttatagcgg ccattcgtat
2751 aatatt