Sequence of DPV African cassava mosaic virus
African cassava mosaic virus-cotton clone ACMV-Lob1, complete genome.
ACC No: FJ751234
Dated: 2012-08-29 | Length: 2781 | CRC: 597271833
ID FJ751234; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
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AC FJ751234;
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DT 13-MAR-2011 (Rel. 108, Created)
DT 29-AUG-2012 (Rel. 113, Last updated, Version 2)
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DE African cassava mosaic virus-cotton clone ACMV-Lob1, complete genome.
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KW .
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OS African cassava mosaic virus-cotton
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2781
RX PUBMED; 22899988.
RA Nawaz-Ul-Rehman M.S., Briddon R.W., Fauquet C.M.;
RT "A melting pot of old world begomoviruses and their satellites infecting a
RT collection of gossypium species in pakistan";
RL PLoS One 7(8):E40050-E40050(2012).
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RN [2]
RP 1-2781
RA Khan M., Fauquet C.;
RT "African cassava mosaic virus DNA-A component infects non-cultivated exotic
RT cotton species in Pakistan";
RL Unpublished.
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RN [3]
RP 1-2781
RA Khan M., Fauquet C.;
RT ;
RL Submitted (13-FEB-2009) to the INSDC.
RL ILTAB, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL MO 63132, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2781
FT /organism="African cassava mosaic virus-cotton"
FT /host="Gossypium lobatum"
FT /mol_type="genomic DNA"
FT /country="Pakistan"
FT /collected_by="Muhammad Shah Nawaz Khan"
FT /collection_date="Mar-2008"
FT /clone="ACMV-Lob1"
FT /db_xref="taxon:685973"
FT gene 136. .477
FT /gene="CP"
FT CDS 136. .477
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="AV1"
FT /db_xref="GOA:F0UXM0"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:F0UXM0"
FT /protein_id="ACZ74634.1"
FT /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRDL
FT VSVIRARNYVEATRRYHHFHSRLQGSSKAELRQPIQEPCYCPHCPRHKSKTGLDEQAHV
FT QKAHDVQDV"
FT gene 296. .1072
FT /gene="AV2"
FT CDS 296. .1072
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2"
FT /db_xref="GOA:F0UXM1"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:F0UXM1"
FT /protein_id="ACZ74633.1"
FT /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRAW
FT MNRPMYRKPMMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTH
FT RVGKRFCIKSVYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNTPQDFGQIFNMFDN
FT EPSTATIKNDLRDRFQVLRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQEAGKYE
FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN"
FT gene complement(1069. .1473)
FT /gene="REn"
FT CDS complement(1069. .1473)
FT /codon_start=1
FT /gene="REn"
FT /product="replication enhancer protein"
FT /note="AC3"
FT /db_xref="GOA:F0UXM2"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:F0UXM2"
FT /protein_id="ACZ74637.1"
FT /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQDI
FT ITVQVRFNHNLRKELGIHKCFLNFRIWTTLQPQTGLFLRVFRYQVLKYLDNIGVISINH
FT VIRAADHVLFNVIEKTIACQLTHEIKFNIY"
FT gene complement(1214. .1621)
FT /gene="TrAP"
FT CDS complement(1214. .1621)
FT /codon_start=1
FT /gene="TrAP"
FT /product="transcriptional activator protein"
FT /note="AC2"
FT /db_xref="GOA:F0UXM3"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:F0UXM3"
FT /protein_id="ACZ74636.1"
FT /translation="MQSSSPSQNHSTQFQSKSVTDNSRSEPSRRRRVDLVCGCSYYLHI
FT NCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNNQAPTTTIPAEPGHHNSPGSIQSQ
FT PAEGAGDSQMFSQLQDLDDLTASDWSFLKGL"
FT gene complement(1530. .2606)
FT /gene="Rep"
FT CDS complement(1530. .2606)
FT /codon_start=1
FT /gene="Rep"
FT /product="replication-associated protein"
FT /note="AC1"
FT /db_xref="GOA:F0UXM4"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:F0UXM4"
FT /protein_id="ACZ74635.1"
FT /translation="MRTPRFRVQAKNVFLTYPKCSIPKEHLLSFIQTLSLPSNPKFIKI
FT CRELHQNGEPHLHALIQFEGKITITNNRLFDCLHPSCSTSFHPNIQGAKSSSDVKSYLD
FT KDGDTVEWGRFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQFHN
FT LNSNLERIFQEPPAPYISPFPCSSFDQVPDELEEWVADNVRASAARPWRPNSIVIEGDS
FT RTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIDDVDPHYLKHFKEFMGSQRDWQ
FT SNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQEALKAWALKNAIFITLTEPLY
FT SVPIKVSHRQFKKRAIPA"
FT gene complement(2150. .2452)
FT /gene="AC4"
FT CDS complement(2150. .2452)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:F0UXM5"
FT /protein_id="ACZ74638.1"
FT /translation="MGNLTCMPSSNSRAKSRLRTIVSSIVYTQAVAPVSTPTFKVPNQA
FT QMSSHTWIRTATPSNGDDFRSMDDLLEEVNSPQMMLTPKRLTAAVSQKLLMSLGN"
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SQ Sequence 2781 BP; 743 A; 558 C; 685 G; 795 T; 0 other;
fj751234 Length: 2781 29-AUG-2012 Type: N Check: 7615 ..
1 accggttggc cccgcccccc tttaaacgtg gtccccgcgc actatgtatg
51 tcggccaatc atgtcgtagc gttaaaggtt atttattagt ggtgggccac
101 tatatacttg caggcgaagt cgttgctagt gcgcaatgtg ggatccactg
151 gtgaatgagt ttcctgactc ggtgcatggg cttaggtgta tgcttgcaat
201 taaatatttg caggccttag aggatacata cgagcccagt actctgggcc
251 acgatctggt tagagattta gtctcagtta tcagggctcg taattatgtc
301 gaagcgacca ggagatatca tcatttccac tccaggctcc aaggttcgtc
351 gaaggctgaa cttcgacagc ccatacagga accgtgctac tgcccccact
401 gtccacgtca caaatcgaaa acgggcctgg atgaacaggc ccatgtacag
451 aaagcccatg atgtacagga tgtatagaag cccagacata cccaggggct
501 gtgaaggccc atgtaaggtc cagtcgtttg agcagaggga tgatgttaag
551 caccttggta tctgtaaggt gattagtgat gtgacacgtg ggcctgggct
601 gacacacagg gtcggaaaga ggttttgtat caagtccgtt tacattcttg
651 gtaagatctg gatggatgaa aatattaaga agcagaatca cactaataat
701 gtgatgtttt acctgcttag ggatagaagg ccttatggca atacgcccca
751 agactttggg cagatattta acatgtttga taatgagccc agtactgcaa
801 caattaagaa cgatttgagg gataggtttc aggtgttgag gaaatttcat
851 gccactgtta ttggtggtcc atctggcatg aaggagcagg ctttggtgaa
901 aaggttttac aggttgaatc atcacgtgac atataatcat caggaggcag
951 ggaagtatga gaatcacaca gagaatgcgt tgcttttgta catggcatgt
1001 actcatgcct ccaatcctgt atatgctacg ttgaaaatac gtatatactt
1051 ctatgacagt attggcaatt aataaatatt gaattttatt tcatgagtca
1101 actgacacgc aatagttttt tcaattacat tgaacaaaac atgatcagca
1151 gctctaatta catggttaat tgagataaca cctatattat ccaagtattt
1201 aagtacttgg tatctaaaga cccttaagaa aagaccagtc tgaggctgta
1251 aggtcgtcca gatcctgaag ttgagaaaac atttgtgaat ccccagctcc
1301 ttccgcaggt tgtgattgaa tcgaacctgg actgttatga tgtcctggtt
1351 cagcaggaat ggtcgttgtt ggtgcctggt tattgtgaaa tacaggggat
1401 tgtttatttc ccaggtatac acgccattca ttgcttgagg agcagtgatg
1451 agttcccctg tgcgtaaatc catgattgga gcagttgata tggaggtaat
1501 atgaacagcc acagacaaga tccactctcc tacgccggga tggctcgctt
1551 cttgaattgt ctgtgactga ctttgattgg aactgagtag agtggttctg
1601 tgagggtgat gaagattgca ttctttaatg cccaggcctt tagcgcttct
1651 tgcttttcct cgtctaggaa ctctttatag gacgaggttg gtcctggatt
1701 gcagaggaag atagtgggaa tgccaccttt aatttgaacg ggtttcccgt
1751 attttgtgtt ggactgccag tcccgctggg accccatgaa ttccttaaag
1801 tgctttaggt agtgtggatc gacgtcatca atgacgttgt accaagcagc
1851 attattgaag acctttggac taaggtccag gtgtccacac aggtaattgt
1901 gtgggcctaa agatctggcc catatcgtct tccctgttct gctatcacct
1951 tctatgacaa tactattggg tctccatggc cgcgcagcgg aagccctaac
2001 attatcagcg acccattctt caagttcatc aggaacttgg tcaaaggaag
2051 aacatgggaa gggagaaata taaggagctg gtggctcctg gaaaatcctt
2101 tctaaattac tatttagatt atgaaactga agtacaaagt cctttgggac
2151 taattcccta atgacattaa gagcttctga cttactgccg ctgttaagcg
2201 ctttggcgta agcatcattt gcggactgtt gacctcctct agcagatcgt
2251 ccatcgatct gaaatcgtcc ccattcgacg gtgtcgccgt ccttatccag
2301 gtatgacttg acatctgagc ttgatttggc accttgaatg ttggggtgga
2351 aactggtgct acagcttggg tgtagacaat cgaagagacg attgttcgta
2401 atcgtgattt tgccctcgaa ttggatgagg gcatgcaagt gaggttcccc
2451 attctgatgc agctctctac agattttaat gaacttaggg ttagatggga
2501 gagagagtgt ttgaatgaat gacagcaggt gttctttggg gatagaacac
2551 tttgggtatg tgagaaagac attcttggct tgaactctaa aacgaggagt
2601 cctcattttg accaagtcaa ttggagacac tcaactagag acactcttga
2651 gcatctcctc ctgttaattg gagacattat ataggtgtct ctaaatggca
2701 ttcttgtaat aagttaaact ttaatttgaa tgaaaagcct caaaaggcgc
2751 ataacaccca aggggccaac cgtataatat t