Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate 4910-10 RNA-dependent RNA polymerase (RdRp) gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein (CP) genes, complete cds.
ACC No: FJ820173
Dated: 2011-01-27 | Length: 2427 | CRC: -871180857
ID FJ820173; SV 1; linear; genomic RNA; STD; VRL; 2427 BP.
XX
AC FJ820173;
XX
DT 27-JAN-2011 (Rel. 107, Created)
DT 27-JAN-2011 (Rel. 107, Last updated, Version 1)
XX
DE Pepino mosaic virus isolate 4910-10 RNA-dependent RNA polymerase (RdRp)
DE gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene
DE block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat
DE protein (CP) genes, complete cds.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
XX
RN [1]
RP 1-2427
RA Cordoba-Selles M.C., Saval P., Herrera-Vasquez J.A., Jorda C.;
RT "Pepino mosaic virus and Olpidium virulentus: agents associated with the
RT occurrence of tomato collapse in Spain";
RL Unpublished.
XX
RN [2]
RP 1-2427
RA Cordoba-Selles M.C.;
RT ;
RL Submitted (11-MAR-2009) to the EMBL/GenBank/DDBJ databases.
RL IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
FH Key Location/Qualifiers
FH
FT source 1. .2427
FT /organism="Pepino mosaic virus"
FT /host="Solanum lycopersicum"
FT /isolate="4910-10"
FT /mol_type="genomic RNA"
FT /country="Spain"
FT /collection_date="2001"
FT /db_xref="taxon:112229"
FT gene <1. .487
FT /gene="RdRp"
FT CDS <1. .487
FT /codon_start=2
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /note="ORF1"
FT /protein_id="ACZ28067.1"
FT /translation="TFDANTECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFK
FT KLQNKLKLTSKTLFPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAA
FT RSYAIDMKHSYQMGDELHNYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH"
FT gene 513. .1217
FT /gene="TGBp1"
FT CDS 513. .1217
FT /codon_start=1
FT /gene="TGBp1"
FT /product="triple gene block protein 1"
FT /note="ORF2"
FT /protein_id="ACZ28068.1"
FT /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI
FT SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK
FT LTIGELNARSNS"
FT gene 1198. .1569
FT /gene="TGBp2"
FT CDS 1198. .1569
FT /codon_start=1
FT /gene="TGBp2"
FT /product="triple gene block protein 2"
FT /note="ORF3"
FT /protein_id="ACZ28069.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH
FT SCYNTHSATNNTQPLSGHH"
FT gene 1421. .1675
FT /gene="TGBp3"
FT CDS 1421. .1675
FT /codon_start=1
FT /gene="TGBp3"
FT /product="triple gene block protein 3"
FT /note="ORF4"
FT /protein_id="ACZ28070.1"
FT /translation="MSSYLSSFSHWVSSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN"
FT gene 1714. .2427
FT /gene="CP"
FT CDS 1714. .2427
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="ORF5"
FT /protein_id="ACZ28071.1"
FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
XX
SQ Sequence 2427 BP; 732 A; 588 C; 446 G; 661 T; 0 other;
fj820173 Length: 2427 27-JAN-2011 Type: N Check: 2737 ..
1 aacttttgat gccaacacag aatgttcaat agcatatact gctacaagat
51 accatcttga ttctacagtc aagcaggttt atgctggaga tgatatggca
101 ttagatggag ttgtccaaga aaaaccctct tttaaaaaac tacagaacaa
151 gcttaaactc acctcaaaga cactatttcc aaaacaggtt aaaggtgatt
201 atgctgaatt ctgtggttgg actttcactc ctggtggtat cattaaaaac
251 cctttgaaaa tgcatgcttc cattatgttg caagaggcaa tcggcaattt
301 acacactgct gccagatcat atgccattga catgaagcat tcataccaaa
351 tgggtgatga gctgcacaat tacttaacac cagatgaagc tgaacaacac
401 ttccttgctg ttcggaagtt gcacaagtta caccaaggag aagcaatgag
451 acttggtgaa aagagccctc caaaagcaac acattgaggg gttaagtttt
501 ccccagttcg aaatggaaag atcaactctg attaatttac ttcaattgca
551 ccacttcgag ccaaaactca gtgttgaagg aatcatagtt gtgcacggaa
601 ttgcaggtac tgggaaaacc actttactta ggactttatt ttctgcttac
651 cctagcttag ttataggttc acctaggcct tgctatttag ataaacaaaa
701 caaaatttca caagtttgct tatcttgctt tcccaatacc cattgtgata
751 ttgttgatga gtatcatttg ctagaaagtt ttccagaacc aaaattggct
801 atctttggtg acccctgtca atgcacatac attgagagac ttagagtccc
851 acattacact tccttcagaa ctcatagatt tggaaagtca actgctgaga
901 ttttgaacaa actgtttgac cttaatatag tctcagttaa gaaagaagac
951 gacatcgttg aattctttaa cccttttgaa gttgacccca ctgagcatat
1001 ctctgcctca gaagaagaag tcttggactt tgtttctgac caagtggtga
1051 ccactagctc agaggaacta gcaggacttg agtttgcaga aacaactttc
1101 tactgcacaa cattggccgc agctgttgct gagaatcctg ctaagacttt
1151 catctctctg actagacaca cccacaaact caccattggg gaactaaatg
1201 ccaggtctaa ctcctagagc tgacctcact gacacataca aaatcattgc
1251 cattgctttc ttgttgtcag cttgcattta cttccaaaat agccactacc
1301 aacctgttgc tggggacaac ttgcaccgtt tgccttttgg tggccaatat
1351 caagacggca ccaaaaagat atcttatttt ccacaacagc agtcatactt
1401 tcattctgga aacaaattaa atgtcctcat acttatcttc attctcacat
1451 tgggtatcgt cctcaccaat aaatttagtt ttagctttag tcgtactact
1501 caccagcatt cttgctataa cacacattca gcaaccaaca atacacaacc
1551 attgtcaggt catcattgac ggtgctgcaa tagtcataac aaattgtgag
1601 aacacaccag aagtgcttaa agcaatcaac ttctcccctt ggaacgggtt
1651 aagttttcct aaatttgaaa attaatattg agtgttcaca aaaatcaact
1701 tcaataaaca atcatgcctg acacaacacc tgttgctgcc acttcaagtg
1751 caccacccac agccaaagat gctggtgcca aagctccttc tgacttctca
1801 aaccccaata cagctcctag tctcagtgat ttgaagaaag tcaagtatgt
1851 ctccaccgtg acctccgtgg ccacaccagc tgaaattgaa gccctaggca
1901 aaatcttcac cgctatgggc cttgccgcca atgagactgg tccggccatg
1951 tgggatctag ctcgtgcata tgctgatgtg cagagttcta aatcggcaca
2001 gctgattgga gctacccctt ccaaccctgc actatcacgc cgagcccttg
2051 ctgctcagtt tgatcgaatc aatataaccc ccaggcaatt ttgcatgtac
2101 tttgccaaag ttgtttggaa catacttctc gacagcaaca ttccaccagc
2151 aaattgggcc aaacttggtt accaagaaga tacaaaattt gctgcatttg
2201 acttcttcga tggagtcacc aaccctgcca gcctgcagcc tgctgatggt
2251 cttatcaggc agccaaatga gaaagaacta gctgctcact ccgtagctaa
2301 gtacggcgcc ttggctaggc aaaagatctc cacaggtaat tatattacca
2351 cacttggaga agtcacacgt ggacacatgg gaggagctaa caccatgtac
2401 gcgatagacg caccccctga actttaa