Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate 5251 RNA-dependent RNA polymerase (RdRp) gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein (CP) genes, complete cds.
ACC No: FJ820175
Dated: 2011-01-27 | Length: 2419 | CRC: 2093834745
ID FJ820175; SV 1; linear; genomic RNA; STD; VRL; 2419 BP.
XX
AC FJ820175;
XX
DT 27-JAN-2011 (Rel. 107, Created)
DT 27-JAN-2011 (Rel. 107, Last updated, Version 1)
XX
DE Pepino mosaic virus isolate 5251 RNA-dependent RNA polymerase (RdRp) gene,
DE partial cds; and triple gene block protein 1 (TGBp1), triple gene block
DE protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein
DE (CP) genes, complete cds.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
XX
RN [1]
RP 1-2419
RA Cordoba-Selles M.C., Saval P., Herrera-Vasquez J.A., Jorda C.;
RT "Pepino mosaic virus and Olpidium virulentus: agents associated with the
RT occurrence of tomato collapse in Spain";
RL Unpublished.
XX
RN [2]
RP 1-2419
RA Cordoba-Selles M.C.;
RT ;
RL Submitted (11-MAR-2009) to the EMBL/GenBank/DDBJ databases.
RL IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
FH Key Location/Qualifiers
FH
FT source 1. .2419
FT /organism="Pepino mosaic virus"
FT /host="Solanum lycopersicum"
FT /isolate="5251"
FT /mol_type="genomic RNA"
FT /country="Spain"
FT /collection_date="2001"
FT /db_xref="taxon:112229"
FT gene <1. .468
FT /gene="RdRp"
FT CDS <1. .468
FT /codon_start=1
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /note="ORF1"
FT /protein_id="ACZ28077.1"
FT /translation="ECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFKKLQNKL
FT KLTSKTLFPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAID
FT MKHSYQMGDELHNYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH"
FT gene 494. .1198
FT /gene="TGBp1"
FT CDS 494. .1198
FT /codon_start=1
FT /gene="TGBp1"
FT /product="triple gene block protein 1"
FT /note="ORF2"
FT /protein_id="ACZ28078.1"
FT /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIIEFFNPFEVDPTEHI
FT SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK
FT LTIGELNARSNS"
FT gene 1179. .1550
FT /gene="TGBp2"
FT CDS 1179. .1550
FT /codon_start=1
FT /gene="TGBp2"
FT /product="triple gene block protein 2"
FT /note="ORF3"
FT /protein_id="ACZ28079.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH
FT SCYNTHSATNNTQPLSGHH"
FT gene 1402. .1656
FT /gene="TGBp3"
FT CDS 1402. .1656
FT /codon_start=1
FT /gene="TGBp3"
FT /product="triple gene block protein 3"
FT /note="ORF4"
FT /protein_id="ACZ28080.1"
FT /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT QVTIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN"
FT gene 1695. .2408
FT /gene="CP"
FT CDS 1695. .2408
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="ORF5"
FT /protein_id="ACZ28081.1"
FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
XX
SQ Sequence 2419 BP; 731 A; 588 C; 443 G; 657 T; 0 other;
fj820175 Length: 2419 27-JAN-2011 Type: N Check: 6853 ..
1 gaatgttcga tagcatatac tgctacaaga taccatcttg attctacagt
51 caagcaggtt tatgctggag atgatatggc attagatgga gttgtccaag
101 aaaaaccctc ttttaaaaaa ctacagaaca agcttaaact cacctcaaag
151 acactatttc caaaacaggt taaaggtgat tatgctgaat tctgtggttg
201 gactttcact cctggtggta tcattaaaaa ccctttgaaa atgcatgctt
251 ccattatgtt gcaagaggca atcggcaatt tacacactgc tgccagatca
301 tatgccattg acatgaagca ttcataccaa atgggtgatg aactgcacaa
351 ttacttaaca ccagatgaag ctgaacaaca cttccttgct gttcggaagt
401 tgcacaagtt acaccaagga gaagcaatga gacttggtga aaagagccct
451 ccaaaagcaa cacattgagg ggttaagttt tccccagttc gaaatggaaa
501 gatcgactct gattaattta cttcaattgc accacttcga gccaaaactc
551 agtgttgaag gaatcatagt tgtgcacgga attgcaggca ctgggaaaac
601 cactttactt aggactttat tttctgctta ccctagctta gttataggtt
651 cacctaggcc ttgctattta gataaacaaa acaaaatttc acaagtttgc
701 ttatcttgct ttcccaatac ccattgtgat attgtcgatg agtatcattt
751 gctagaaagt tttccagaac caaaattggc tatctttggt gacccctgtc
801 aatgcacata cattgagaga cttagagtcc cacattacac ttccttcaga
851 actcatagat ttggaaagtc aactgctgag attttgaaca aactgtttga
901 tcttaatata gtctcagtta agaaagaaga cgacatcatt gaattcttta
951 acccttttga agttgacccc actgagcata tctctgcctc tgaagaagaa
1001 gtcttggact ttgtttctga ccaagtggtg accactagct cagaggaact
1051 agcaggactt gagtttgcag aaacaacttt ctactgcaca acattggccg
1101 cagctgttgc tgaaaatcct gctaagactt tcatctctct gactagacac
1151 acccacaaac tcaccattgg ggaactaaat gccaggtcta actcctagag
1201 ctgacctcac tgacacatac aaaatcattg ccattgcttt cttgttgtca
1251 gcttgcattt acttccaaaa tagccactac caacctgttg ctggagacaa
1301 cttgcaccgt ttgccttttg gtggccaata tcaagacggc accaaaaaga
1351 tatcttattt cccacaacag cagtcatact ttcattctgg aaacaaatta
1401 aatgtcctca tacttatctt cattctcaca ttgggtattg tcctcaccaa
1451 taaatttagt tttagcttta gtcgtactac tcaccagcat tcttgctata
1501 acacacattc agcaaccaac aatacacaac cattgtcagg tcaccattga
1551 cggtgctgca atagtcataa caaattgtga gaacacacca gaagtgctta
1601 aagcaatcaa cttctcccct tggaacgggt taagttttcc taaatttgaa
1651 aattaatatt gagtgttcac aaaaatcaac ttcaataaac aatcatgcct
1701 gacacaacac ctgttgctgc cacttcaagt gcaccaccca cagccaaaga
1751 tgctggtgcc aaagctcctt ctgacttctc aaatcccaat acagctccta
1801 gtctcagtga tttgaagaaa gtcaagtatg tctccaccgt gacctctgtg
1851 gccacaccag ctgaaattga agccctaggc aaaatcttca ccgctatggg
1901 ccttgccgcc aatgagactg gtccggccat gtgggatcta gctcgtgcat
1951 atgctgatgt gcagagttct aaatcggcac agctgatcgg agctacccct
2001 tccaaccctg cactatcacg ccgagccctt gctgctcagt ttgatcgaat
2051 caatataacc cccaggcaat tttgcatgta ctttgccaaa gttgtttgga
2101 acatacttct cgacagcaac attccaccag caaattgggc caaacttggt
2151 taccaagaag atacaaaatt tgctgcattt gacttcttcg atggagtcac
2201 caaccctgcc agcctgcagc ctgctgatgg tcttatcagg cagccaaatg
2251 agaaagaact agctgctcac tccgtagcta agtacggcgc cttggctagg
2301 caaaagatct ccacaggtaa ttatattact acacttggag aagtcacacg
2351 cggacacatg ggaggagcta acaccatgta cgcgatagac gcaccccctg
2401 aactttaaac actcgaaac