Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate 7132 RNA-dependent RNA polymerase (RdRp) gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein (CP) genes, complete cds.
ACC No: FJ820179
Dated: 2011-01-27 | Length: 2430 | CRC: -602657994
ID FJ820179; SV 1; linear; genomic RNA; STD; VRL; 2430 BP.
XX
AC FJ820179;
XX
DT 27-JAN-2011 (Rel. 107, Created)
DT 27-JAN-2011 (Rel. 107, Last updated, Version 1)
XX
DE Pepino mosaic virus isolate 7132 RNA-dependent RNA polymerase (RdRp) gene,
DE partial cds; and triple gene block protein 1 (TGBp1), triple gene block
DE protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein
DE (CP) genes, complete cds.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
XX
RN [1]
RP 1-2430
RA Cordoba-Selles M.C., Saval P., Herrera-Vasquez J.A., Jorda C.;
RT "Pepino mosaic virus and Olpidium virulentus: agents associated with the
RT occurrence of tomato collapse in Spain";
RL Unpublished.
XX
RN [2]
RP 1-2430
RA Cordoba-Selles M.C.;
RT ;
RL Submitted (11-MAR-2009) to the EMBL/GenBank/DDBJ databases.
RL IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
FH Key Location/Qualifiers
FH
FT source 1. .2430
FT /organism="Pepino mosaic virus"
FT /host="Solanum lycopersicum"
FT /isolate="7132"
FT /mol_type="genomic RNA"
FT /country="Spain"
FT /collection_date="2005"
FT /db_xref="taxon:112229"
FT gene <1. .485
FT /gene="RdRp"
FT CDS <1. .485
FT /codon_start=3
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /note="ORF1"
FT /protein_id="ACZ28097.1"
FT /translation="FDANTECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFKK
FT LQNKLKLTSKTLFPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAAR
FT SYAIDMKHSYQMGDELHNYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH"
FT gene 511. .1215
FT /gene="TGBp1"
FT CDS 511. .1215
FT /codon_start=1
FT /gene="TGBp1"
FT /product="triple gene block protein 1"
FT /note="ORF2"
FT /protein_id="ACZ28098.1"
FT /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI
FT SASEEEVLDFVSDQVLTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK
FT LTIGELNARSNS"
FT gene 1196. .1567
FT /gene="TGBp2"
FT CDS 1196. .1567
FT /codon_start=1
FT /gene="TGBp2"
FT /product="triple gene block protein 2"
FT /note="ORF3"
FT /protein_id="ACZ28099.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH
FT SCYNTHSATNNTQPLSGHH"
FT gene 1419. .1673
FT /gene="TGBp3"
FT CDS 1419. .1673
FT /codon_start=1
FT /gene="TGBp3"
FT /product="triple gene block protein 3"
FT /note="ORF4"
FT /protein_id="ACZ28100.1"
FT /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN"
FT gene 1712. .2425
FT /gene="CP"
FT CDS 1712. .2425
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="ORF5"
FT /protein_id="ACZ28101.1"
FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
XX
SQ Sequence 2430 BP; 735 A; 588 C; 443 G; 664 T; 0 other;
fj820179 Length: 2430 27-JAN-2011 Type: N Check: 5090 ..
1 cttttgatgc caacacagaa tgttcaatag catatactgc tacaagatac
51 catcttgatt ctacagtcaa gcaggtttat gctggagatg atatggcatt
101 agatggagtt gtccaagaaa aaccctcttt taaaaaacta cagaacaagc
151 ttaaactcac ctcaaagaca ctatttccaa aacaggttaa aggtgattat
201 gctgaattct gtggttggac tttcactcct ggtggtatca ttaaaaaccc
251 tttgaaaatg catgcttcca ttatgttgca agaggcaatt ggcaatttac
301 acacggctgc cagatcatat gccattgaca tgaagcattc ataccaaatg
351 ggtgatgagc tgcacaatta cttaacacca gatgaagctg aacaacactt
401 ccttgctgtt cggaagttgc acaagttaca ccaaggagaa gcaatgagac
451 ttggtgaaaa gagccctcca aaagcaacac attgaggggt taagttttcc
501 ccagttcgaa atggaaagat caactctgat taatttactt caattacacc
551 actttgagcc aaaactcagt gttgaaggaa tcatagttgt gcacggaatt
601 gcaggcactg ggaaaaccac tttacttagg actttatttt ctgcttaccc
651 tagcttagtt ataggttcac ctaggccttg ctatttagat aaacaaaaca
701 aaatttcaca agtttgctta tcttgctttc ccaatactca ttgtgatatt
751 gtcgatgagt accatttgct agaaagtttt ccagaaccaa aattggctat
801 ctttggtgac ccctgtcaat gcacatacat tgagagactt agagtcccac
851 attacacttc cttcagaact catagatttg gaaagtcaac tgctgagatt
901 ttgaacaaac tgtttgacct taatatagtc tcagttaaga aagaagacga
951 catcgttgaa ttctttaacc cttttgaagt tgaccccact gagcatatct
1001 ccgcctctga agaagaagtc ttggactttg tttctgacca agtgttgacc
1051 actagctcag aggaactagc aggacttgag tttgcagaaa caactttcta
1101 ctgtacaaca ttggccgcag ctgttgctga aaatcctgct aagactttca
1151 tctctctgac tagacacacc cacaaactca ccattgggga actaaatgcc
1201 aggtctaact cctagagctg acctcactga cacatacaaa atcattgcca
1251 ttgcttttct gttgtcagct tgcatttact tccaaaatag ccactaccaa
1301 cctgttgctg gagacaactt gcaccgtttg cctttcggtg gccaatatca
1351 agacggcacc aaaaagatat cttattttcc acaacagcag tcatactttc
1401 attctggaaa caaattaaat gtcctcatac ttatcttcat tctcacattg
1451 ggtattgtcc tcaccaataa atttagtttt agctttagtc gtactactca
1501 ccagcattct tgctataaca cacattcagc aaccaacaat acacaaccat
1551 tgtcaggtca tcattgacgg tgctgcaata gtcataacaa attgtgagaa
1601 cacaccagaa gtgcttaaag caatcaactt ctccccttgg aacgggttaa
1651 gttttcctaa atttgaaaat taatattgag tgctcacaaa aatcaacttc
1701 aataaacaat catgcctgac acaacacctg ttgctgccac ttcaagtgca
1751 ccacccacag ccaaagatgc tggtgccaaa gctccttctg acttctcaaa
1801 tcccaataca gctcctagtc tcagtgattt gaagaaagtc aagtatgtct
1851 ccaccgtgac ctccgtggcc acaccagctg aaattgaagc cctaggcaaa
1901 atcttcaccg ctatgggcct tgccgccaat gagactggtc cggccatgtg
1951 ggatctggct cgtgcatatg ctgatgtgca aagttctaaa tcggcacagc
2001 tgattggagc taccccttcc aaccctgcac tatcacgccg agcccttgct
2051 gctcagtttg atcgaatcaa tataaccccc aggcaatttt gcatgtactt
2101 tgccaaagtt gtttggaata tacttctcga cagcaacatt ccaccagcaa
2151 attgggccaa acttggttac caagaagata caaaatttgc tgcatttgac
2201 ttcttcgatg gagtcacaaa ccctgccagc ctgcagcctg ctgatggtct
2251 tatcaggcag ccaaatgaga aagaactagc tgctcactcc gtagctaagt
2301 acggcgcctt ggctaggcaa aagatctcca caggtaatta tattaccaca
2351 cttggagaag tcacacgtgg acacatggga ggagctaaca ccatgtacgc
2401 gatagacgca ccccctgaac tttaaacact