Sequence of DPV Banana bunchy top virus

Banana bunchy top virus isolate NS1 segment DNA-R, complete sequence.

ACC No: FJ859731

Dated: 2011-03-31 | Length: 1111 | CRC: -1080195489

                
ID   FJ859731; SV 1; circular; genomic DNA; STD; VRL; 1111 BP.
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AC   FJ859731;
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DT   31-MAR-2011 (Rel. 108, Created)
DT   31-MAR-2011 (Rel. 108, Last updated, Version 1)
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DE   Banana bunchy top virus isolate NS1 segment DNA-R, complete sequence.
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KW   .
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OS   Banana bunchy top virus
OC   Viruses; ssDNA viruses; Nanoviridae; Babuvirus.
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RN   [1]
RP   1-1111
RA   Hyder M.Z., Thornburg R.W., Naqvi S.M.S.;
RT   "Genetic variability associated with Banana bunchy top virus in Pakistan";
RL   Unpublished.
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RN   [2]
RP   1-1111
RA   Hyder M.Z., Thornburg R.W., Naqvi S.M.S.;
RT   ;
RL   Submitted (24-MAR-2009) to the EMBL/GenBank/DDBJ databases.
RL   Department of Biochemistry, PMAS Arid Agriculture University Rawalpindi,
RL   Murree Road, Rawalpinid 46300, Pakistan
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1111
FT                   /organism="Banana bunchy top virus"
FT                   /segment="DNA-R"
FT                   /host="Musa acuminata Colla"
FT                   /isolate="NS1"
FT                   /mol_type="genomic DNA"
FT                   /country="Pakistan:Nawabshah, Sindh"
FT                   /collection_date="Jan-2007"
FT                   /db_xref="taxon:12585"
FT   CDS             102. .962
FT                   /codon_start=1
FT                   /product="master replication initiation protein"
FT                   /note="M-Rep"
FT                   /protein_id="ACZ59105.1"
FT                   /translation="MARYVVCWMFTINNPTTLPVMRDEIKYMVYQVERGQEGTRHVQGY
FT                   VEMKRRSSLKQMRAFFPGAHLEKRKGSQEEARSYCMKEDTRIEGPFEFGAFKLSCNDNL
FT                   FDVIQDMRETHKRPLEYLYDCPNTFDRSKDTLYRVQAEMNKTKAMNSWRTSFSAWTSEV
FT                   ENIMAQPCHRRIIWVYGPNGGEGKTTYAKHLMKTRNAFYSPGGKSLDICRLYNYEDIVI
FT                   FDIPRCKEDYLNYGLLEEFKNGIIQSGKYEPVLKIVEYVEVIVMANFLPKEGIFSEDRI
FT                   KLVSC"
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SQ   Sequence 1111 BP; 359 A; 194 C; 278 G; 280 T; 0 other;

fj859731 Length: 1111  31-MAR-2011  Type: N  Check: 5616  ..

       1  agcgctgggg cttattatta cccccagcgc tcgggacggg acatttgcat
      51  ctataaatag acctcccccc tctccattac aagatcatca tcgacgacag
     101  aatggcgcga tatgtggtat gctggatgtt caccatcaac aatcccacaa
     151  cactaccagt gatgagggat gagatcaaat atatggtata tcaagtggag
     201  aggggacagg agggtactcg tcatgtgcaa ggatatgtcg agatgaagag
     251  acgaagctct ctgaagcaga tgagagcctt ctttcctggc gcacaccttg
     301  agaaacgaaa gggaagccaa gaagaagcgc ggtcatactg tatgaaggaa
     351  gatacaagaa tcgaaggtcc cttcgagttt ggtgcattta aattgtcatg
     401  taatgataat ttatttgatg tcatacagga tatgcgtgaa acgcacaaaa
     451  ggcctttgga gtatttatat gattgtccta acaccttcga tagaagtaag
     501  gatacattat acagagtaca agccgagatg aataaaacga aggcgatgaa
     551  tagctggaga acgtctttca gtgcttggac atcagaggtg gagaatatca
     601  tggcgcagcc atgtcatcgg agaataattt gggtctatgg cccaaatgga
     651  ggagaaggaa agacaacgta tgcaaaacat ctaatgaaga cgaggaatgc
     701  gttttattct ccaggaggaa aatctttgga tatatgtaga ctgtataatt
     751  acgaggatat tgttatattt gatattccaa gatgcaaaga ggattattta
     801  aattatgggt tattagagga atttaagaat ggaataattc aaagcgggaa
     851  atatgaaccc gttttgaaga tagtagaata tgtcgaagtc attgtaatgg
     901  ctaacttcct tccgaaggaa ggaatctttt ctgaagatcg aataaagttg
     951  gtttcttgct gaacaagtaa tgactttaca gcgcacgctc cgacaaaagc
    1001  acactatgac aaaagtacgg gtatctgatt gggttatctt aacgatctag
    1051  ggccgtaggc ccgtgagcaa tgaacggcga gatcagatgt cccgagttag
    1101  tgcgccacgt a