Sequence of DPV Quaranfil virus

Quaranfil virus isolate EG T 377 hemagglutinin (HA) gene, complete cds.

ACC No: FJ861694

Dated: 2009-11-09 | Length: 1616 | CRC: 1072109396

                
ID   FJ861694; SV 1; linear; viral cRNA; STD; VRL; 1616 BP.
XX
AC   FJ861694;
XX
DT   09-NOV-2009 (Rel. 102, Created)
DT   09-NOV-2009 (Rel. 102, Last updated, Version 1)
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DE   Quaranfil virus isolate EG T 377 hemagglutinin (HA) gene, complete cds.
XX
KW   .
XX
OS   Quaranfil virus
OC   Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
OC   unclassified Orthomyxoviridae.
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RN   [1]
RP   1-1616
RX   DOI; 10.1128/JVI.00677-09.
RX   PUBMED; 19726499.
RA   Presti R.M., Zhao G., Beatty W.L., Mihindukulasuriya K.A., da Rosa A.P.,
RA   Popov V.L., Tesh R.B., Virgin H.W., Wang D.;
RT   "Quaranfil, Johnston Atoll, and Lake Chad viruses are novel members of the
RT   family Orthomyxoviridae";
RL   J. Virol. 83(22):11599-11606(2009).
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RN   [2]
RP   1-1616
RA   Presti R.M., Wang D., Virgin H.W.;
RT   ;
RL   Submitted (23-MAR-2009) to the INSDC.
RL   Medicine, Washington University, 660 S. Euclid, St. Louis, MO 63110, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1616
FT                   /organism="Quaranfil virus"
FT                   /host="Argas reflexus"
FT                   /isolate="EG T 377"
FT                   /mol_type="viral cRNA"
FT                   /country="Afghanistan"
FT                   /collection_date="Sep-1968"
FT                   /db_xref="taxon:688436"
FT   gene            28. .1563
FT                   /gene="HA"
FT   CDS             28. .1563
FT                   /codon_start=1
FT                   /gene="HA"
FT                   /product="hemagglutinin"
FT                   /note="glycoprotein"
FT                   /db_xref="GOA:D0QX25"
FT                   /db_xref="InterPro:IPR004955"
FT                   /db_xref="UniProtKB/TrEMBL:D0QX25"
FT                   /protein_id="ACY56281.1"
FT                   /translation="MFMVALSLLLLRLSTASPCTSEACSGPYRISKYKMPTIDVSNHKT
FT                   HVTVWKGPKEVTGILGYRSRYTAYCYEGGVLDGNTGCTKWHVMFPPSAAELQKWAIDGK
FT                   CYYGVECNKGGDCWGSWADRCHDDRVDLNSAQEKEYNGNNDEWRMFAHHTCISTWRCGF
FT                   SKSSYPIHFTNVKKGRGDGDITYTLATYDQHGSILSLDKPSVKIDQETTLSFELPRSLV
FT                   SRSSTEIDCFFGNDQTPVCQLNEHFEDLEGQFVTFNGDYTATYGNYLLALNDKKAINGS
FT                   VGAKKFGNKAWVEKQLGKAASLEDVRNILSIQMWSHQESGYNLVQLYKVVGEMMNTLTT
FT                   VINSVGKLDDELIGRLIGVEGKSKWFNSELFHMCPCFQLGSFGDSNCASGYIFSEGRVK
FT                   VDKDGSKCTSFGGSITPLYLFDNVSYKFAVLHTPPAQGVAQDWEGWSWLAAEKQRLIET
FT                   MTFQDSVSGGNNVLSQLYKETLDSFNIWKWFERFSTLAAWGALAISVINMMRK"
XX
SQ   Sequence 1616 BP; 436 A; 358 C; 433 G; 389 T; 0 other;

fj861694 Length: 1616  09-NOV-2009  Type: N  Check: 3322  ..

       1  gcaatcacat cctctttcac tttcatcatg ttcatggtgg ccctgtcact
      51  cctgctcctc aggctctcca ctgcctcacc atgcaccagt gaagcatgct
     101  ctggccctta ccgcatttcc aagtacaaga tgcccaccat cgatgtgtcc
     151  aaccacaaga cccacgtcac agtttggaaa gggcccaagg aagtcaccgg
     201  aatattgggt taccgaagca ggtacaccgc ctactgctac gaaggaggag
     251  tgctggacgg aaacaccggt tgcaccaagt ggcatgtgat gttccctcct
     301  tcagcagcgg agcttcaaaa atgggccatc gatggaaagt gctattatgg
     351  agtggagtgt aacaaggggg gtgattgttg gggcagttgg gctgacaggt
     401  gccatgatga tcgagtggat ctcaactcag cccaggaaaa agagtacaac
     451  gggaacaacg acgagtggag gatgtttgcc catcacacat gtatttccac
     501  ttggagatgc ggatttagta agagttctta ccccatccac ttcacaaatg
     551  taaagaaagg gaggggtgat ggggacatca cttacacttt ggccacttac
     601  gaccagcacg ggtctattct ctcccttgat aaaccgtctg taaagataga
     651  ccaagaaacc accctttcct ttgaactccc tcggtcgttg gtgagcaggt
     701  cgtctactga gatagactgc ttctttggga atgaccaaac tcccgtgtgc
     751  cagctcaatg agcatttcga ggaccttgaa ggacaatttg tgacgttcaa
     801  tggagactac actgctactt atgggaatta ccttctggcc ctaaatgaca
     851  agaaggctat aaatgggtct gttggtgcta agaagtttgg gaacaaagca
     901  tgggtggaga agcaattggg caaggctgca tcactcgaag atgtaaggaa
     951  catactgagc atccagatgt ggtcgcacca ggagtcgggt tacaatctag
    1001  tgcagctcta caaagtagtg ggcgagatga tgaacacact gacgactgtg
    1051  ataaacagtg tgggcaagct ggacgatgag ttaataggga ggttaattgg
    1101  agtagaggga aagagcaagt ggtttaatag tgaactgttc cacatgtgtc
    1151  cctgctttca gttgggtagc tttggggact ccaactgcgc ctcaggatac
    1201  attttcagtg aggggagagt caaggttgac aaagacggga gcaaatgcac
    1251  ttcatttggc ggatcaatca caccccttta cctcttcgac aatgtgagtt
    1301  ataagtttgc ggtgcttcac actcccccag ctcaaggcgt ggctcaagac
    1351  tgggagggat ggagctggct ggccgctgag aaacaacgtc tgatagaaac
    1401  catgactttt caagactcag tgtctggggg gaacaatgta ttatctcaat
    1451  tatacaaaga gactctagac tccttcaaca tttggaaatg gtttgagcgg
    1501  ttttcaactc tggctgcctg gggcgcacta gcaatatcgg tgatcaatat
    1551  gatgaggaag tagaggccct tggtgcacag agtacactgt tgtgaaaaaa
    1601  gaggattgtg attgct