Sequence of DPV Maize streak virus
Maize streak virus isolate MSV-A_ZA_Emp2_T8-2007, complete genome.
ACC No: FJ882107
Dated: 2009-12-06 | Length: 2687 | CRC: -1143633197
ID FJ882107; SV 1; circular; genomic DNA; STD; VRL; 2687 BP.
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AC FJ882107;
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DT 06-DEC-2009 (Rel. 103, Created)
DT 06-DEC-2009 (Rel. 103, Last updated, Version 1)
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DE Maize streak virus isolate MSV-A_ZA_Emp2_T8-2007, complete genome.
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KW .
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OS Maize streak virus
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
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RN [1]
RP 1-2687
RX PUBMED; 19692547.
RA Harkins G.W., Martin D.P., Duffy S., Monjane A.L., Shepherd D.N.,
RA Windram O.P., Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A.,
RA Flett B., Ramusi M., Rybicki E.P., Peterschmitt M., Varsani A.;
RT "Dating the origins of the maize-adapted strain of maize streak virus,
RT MSV-A";
RL J. Gen. Virol. 90(PT 12):3066-3074(2009).
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RN [2]
RP 1-2687
RA Harkins G.W., Martin D.P., Monjane A.L., Shepherd D.N., Windram O.P.,
RA Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., Flett B., Ramusi M.,
RA Rybicki E.P., Peterschmitt M., Varsani A.;
RT ;
RL Submitted (02-APR-2009) to the EMBL/GenBank/DDBJ databases.
RL Electron Microscope Unit, University of Cape Town, Private Bag, Cape Town,
RL WP 7701, South Africa
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FH Key Location/Qualifiers
FH
FT source 1. .2687
FT /organism="Maize streak virus"
FT /host="maize"
FT /isolate="MSV-A_ZA_Emp2_T8-2007"
FT /mol_type="genomic DNA"
FT /country="South Africa"
FT /lat_lon="28.77 S 31.88 E"
FT /collection_date="2007"
FT /db_xref="taxon:10821"
FT CDS 157. .462
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="ACZ04187.1"
FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL
FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG"
FT CDS 473. .1207
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ACZ04188.1"
FT /translation="MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTL
FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT
FT GTGVMWLVYDTTPGGQAPTLQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT GNGLTFTAHGQTRLYFKSVGNQ"
FT CDS complement(1716. .2534)
FT /codon_start=1
FT /product="RepA"
FT /protein_id="ACZ04189.1"
FT /translation="MASSSSNRQFSHRNVNTFLTYPKCPENPEIACQMIWELVVRWIPK
FT YIVCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE
FT PLAMFERGTFIPRKSPFLGKSDSEIKEKKPSKDEIMRDIISHSTSKEEYLSMIQKEFPY
FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML
FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSVQQEQENLLGPEA"
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SQ Sequence 2687 BP; 689 A; 638 C; 684 G; 676 T; 0 other;
fj882107 Length: 2687 06-DEC-2009 Type: N Check: 9360 ..
1 taatattacc gcgccttctt ttcctgcgag ggcccggtag ggcccgagcg
51 atttgattta aagcttggtt ctgctttgta tgatttatct aaagcagccc
101 aatctaaaga aaccggtccc gggcactata aattgcctaa caagtgcgat
151 tcattcatgg atccacagaa cgccctttat tatcagccgc gggtacccac
201 agcagctccg gcatccgcag gagtgccgtg gagtcgcgta ggcgaggtag
251 ctattttgag ctttgttgca ctgatttgct tttacttgct ttacctttgg
301 gtgctgagag accttatctt agttctgaag gctcgacaag gcagatccac
351 ggaggagctg atatttggag gacaagctgt ggataggagc aaccctatcc
401 ctaatctacc agcaccacca agtcagggca atcccgggcc atttgttcca
451 ggcacgggat aagcattcag ccatgtccac gtccaagagg aagcggggag
501 atgattcgaa ctggagtaag cgggtgacta agaagaagcc ttcttcagca
551 gggctgaaga gggctggaag caaggccgat aggccatccc tccaaatcca
601 gacactccag catgcgggga ccaccatgat aacggtcccc tccggaggag
651 tatgtgacct catcaacacc tacgcccgag gatctgacga gggcaaccgc
701 cacaccagcg agactctcac gtacaagatc gccatcgact accacttcgt
751 tgccgacgcg gcagcctgcc gctactccaa caccggaacc ggtgtaatgt
801 ggctggtgta tgacaccact cccggcggac aagctccgac cctgcaaact
851 atatttgcct accctgacac gctaaaagcg tggccggcca catggaaggt
901 gagccgggag ctgtgtcatc gcttcgtggt gaaacggcga tggttgttca
951 acatggagac cgacggtcgg attggttcgg atatccctcc ctcgaatgca
1001 agttggaagc cctgcaagcg caacatttac ttccacaagt tcacgagtgg
1051 gttgggagtg agaacgcagt ggaagaatgt aacggacgga ggagttggtg
1101 ccatccagag aggagcgctg tacatggtca ttgcccccgg caatggcctt
1151 acatttactg cccatgggca gacccgtctg tactttaaga gtgttggcaa
1201 ccagtaatga ataaaaactc ccgttttatt acatctgatg aatgctgaaa
1251 gcttacatta atatgtcgtg cgatggcacg aaaaaacaca cgcaatcaat
1301 acaggggggt agtaggcggg cggctaaggg tggtgctcgg cgggcaaaac
1351 atcgaaaaat caagatctat ctgaatgtac tgcctccgta ggaggcagca
1401 cagggggaga ataccacttc tcccccggcg acataatgta aattgtgcaa
1451 tttgcctcga aatactccag ctgccctgga gtcatttcct tcatccaatc
1501 ttcatccgag ttggcgagga ttattgtagg cttggacttc ttctgcacct
1551 ttttcttctt accatacttg gggtttacaa tgaaatccct ctgacagcca
1601 actaactgtt tccaacaagg acagaattta aacgggatat catctacgat
1651 gttgtagatt gcgtcttcgt tgtatgaaga ccaatcaaca ttattttgcc
1701 agtaattatg aacccctagg cttctggccc aagtagattt tcctgttctt
1751 gttggaccga cgatgtagag gctctgcttt cttgatcttt catctgatga
1801 ctggatacag aatccatcca ttgtaggtca gaaattgcat cctcgagggt
1851 ataacaggta ggttgaagga gcatgtaagc ttcgggacta acctggaaga
1901 tgttaggctg gagccaatca ttgattgact cattacaaag taaatcaggt
1951 gaggatggtg gatgaggatt ggtgaactct tcctgaatct caggaaaaag
2001 cttatttgca gagtattcaa aatactgcaa ttttgtggac caatcatagg
2051 gaaactcttt ctggatcatg gagaggtact cttctttgga agtagagtgt
2101 gaaataatgt ctcgcattat ttcatctttg gaaggctttt tttccttaat
2151 ttctgaatca gattttccta ggaagggtga cttcctagga atgaaagtac
2201 ctctctcaaa catagccaga ggttccttga gaatgtaatc cctcactctg
2251 tttactgact tggcactctg aatgtttggg tgaaacccat taatatcaaa
2301 gaaccttgag tccgatattc ttaccggctt ctctgtttga agcaatgcat
2351 gtaaatgcaa acttccatct ttgtgtgcct ctcgggcaca gacaatatac
2401 ttgggtatcc aacgaacaac gagctcccag atcatctgac aggcgatttc
2451 aggattttct ggacactttg gataggttaa gaacgtgtta acgttcctgt
2501 gtgagaactg acggttggat gaggaggagg ccatatccga cgacggagga
2551 tgaggctggg ggatggcaga ttgggagctc tcaactctat accaaccggt
2601 gcgccttcga aatccgccgc cccccctctt atagtggttg tgaatgggcc
2651 ggaccgggcc ggcccagcag gaaaagaagg cgcgcac