Sequence of DPV Maize streak virus
Maize streak virus isolate MSV-A_ZA_Pot4_O28-1979, complete genome.
ACC No: FJ882132
Dated: 2009-12-06 | Length: 2690 | CRC: 746547017
ID FJ882132; SV 1; circular; genomic DNA; STD; VRL; 2690 BP.
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AC FJ882132;
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DT 06-DEC-2009 (Rel. 103, Created)
DT 06-DEC-2009 (Rel. 103, Last updated, Version 1)
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DE Maize streak virus isolate MSV-A_ZA_Pot4_O28-1979, complete genome.
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KW .
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OS Maize streak virus
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
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RN [1]
RP 1-2690
RX PUBMED; 19692547.
RA Harkins G.W., Martin D.P., Duffy S., Monjane A.L., Shepherd D.N.,
RA Windram O.P., Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A.,
RA Flett B., Ramusi M., Rybicki E.P., Peterschmitt M., Varsani A.;
RT "Dating the origins of the maize-adapted strain of maize streak virus,
RT MSV-A";
RL J. Gen. Virol. 90(PT 12):3066-3074(2009).
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RN [2]
RP 1-2690
RA Harkins G.W., Martin D.P., Monjane A.L., Shepherd D.N., Windram O.P.,
RA Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., Flett B., Ramusi M.,
RA Rybicki E.P., Peterschmitt M., Varsani A.;
RT ;
RL Submitted (02-APR-2009) to the EMBL/GenBank/DDBJ databases.
RL Electron Microscope Unit, University of Cape Town, Private Bag, Cape Town,
RL WP 7701, South Africa
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FH Key Location/Qualifiers
FH
FT source 1. .2690
FT /organism="Maize streak virus"
FT /host="maize"
FT /isolate="MSV-A_ZA_Pot4_O28-1979"
FT /mol_type="genomic DNA"
FT /country="South Africa"
FT /lat_lon="26.69 S 27 E"
FT /collection_date="1979"
FT /db_xref="taxon:10821"
FT CDS 157. .462
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="ACZ04259.1"
FT /translation="MDSQNALYYQPRVPTAAPTSGGVPWSRVGEVAILSFVALICFYLL
FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG"
FT CDS 473. .1207
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ACZ04260.1"
FT /translation="MSTSKRKRGDDANWSKRVPKKKPSSAGLKRAGSKADRPSLQIQTL
FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAAACRYSNT
FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT DGRIGSDIPPSNTSWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT GNGLTFTAHGQTRLYFKSVGNQ"
FT CDS complement(1717. .2535)
FT /codon_start=1
FT /product="RepA"
FT /protein_id="ACZ04261.1"
FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPR
FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE
FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPF
FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML
FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQEPENLLGPEA"
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SQ Sequence 2690 BP; 695 A; 634 C; 688 G; 673 T; 0 other;
fj882132 Length: 2690 06-DEC-2009 Type: N Check: 873 ..
1 taatattacc gcgccttctt ttcctgcgag ggcccggtag ggaccgagcg
51 ctttgattta aagcctggtt ctgctttgta tgatttatct aaagcagccc
101 aatctaaaga aaccggtccc gggcactata aattgcctaa caagtgcgat
151 tcattcatgg attcacagaa cgccctgtat tatcagccgc gggtacccac
201 agcagctccg acatccggag gagtgccgtg gagtcgcgta ggcgaggtag
251 ctattttgag ctttgttgca ttgatttgct tttacctgct ttacctttgg
301 gtgctgagag accttatctt agttctgaag gctcgacaag gcagatccac
351 ggaggagctg atatttggtg gacaagctgt ggataggagc aaccctatcc
401 ctaatctacc agcaccacca agtcagggca atcccgggcc atttgttcca
451 ggcacgggat aagcaatcag ccatgtccac gtccaagagg aagcggggag
501 atgatgcgaa ttggagtaag cgggtgccta agaagaagcc ttcttcagct
551 gggctgaaga gggctggaag caaggccgat aggccatccc tccaaatcca
601 gacactccag catgctggga ccaccatgat aactgtccca tccggaggag
651 tatgtgacct catcaacacc tatgcacgag gatctgacga gggcaaccgc
701 cacaccagcg agactctgac gtacaagatc gccgtcgact accacttcgt
751 tgccgacgcg gctgcctgcc gctactccaa caccggaacc ggtgtaatgt
801 ggctggtgta tgacaccact cccggcggac aagctccgac cccgcaaact
851 atatttgcct accctgacac gctaaaagcg tggccggcca catggaaagt
901 gagccgggag ctgtgtcatc gcttcgtggt gaaacggcga tggttgttca
951 acatggagac cgacggtcgg attggttcgg atatccctcc ctcgaataca
1001 agttggaagc cttgcaagcg caacatctac ttccataagt tcacgagtgg
1051 gttgggagtg agaacgcagt ggaagaatgt aacggacgga ggagttggtg
1101 ccatccagag aggagcgctg tacatggtca ttgccccagg caatggcctt
1151 acttttactg cccatgggca gacccgtctg tactttaaga gtgttggcaa
1201 ccagtaatga ataaaaactc ccgttttatt atatttgatg aacgctgaaa
1251 gcttacatta atatgtcgtg cgatggcacg aaaaaacaca cgcaaacaat
1301 acaggggggt agtcggctgg cggctaaggg tggtgctcgg cgggcagaac
1351 atcgaaaaat caagatctat atgaattaca cttcctccgt aggaggaagc
1401 acagggggag aataccactt ctcccccggc gacataatgt aaatgatgca
1451 gtttgcctcg aaatactcca gctgccctgg agtcatttcc ttcatccaat
1501 cttcatccga gttggcgagg attattgtag gcttagactt cttctgcacc
1551 tttttcttct taccatactt ggggtttaca atgaaatccc tctgacagcc
1601 gactaactgt ttccaacaag gacagaattt aaacggaata tcatctacga
1651 tgttgtagat tgcgtcttcg ttgtatgaag accaatcaac attattttgc
1701 cagtaattat gaacccctag gcttctggcc caagtagatt ttccggttct
1751 tgttgggccg acgatgtaga ggctctgctt tcttgatcct tcatctgatg
1801 actggataca gaatccatcc attggaggtc agaaattgca tcctcgaggg
1851 tataacaggt aggttgaagg agcatgtaag cttcgggact aacctggaag
1901 atgttaggct ggagccaatc attgattgac tcattacaaa gtaaatcagg
1951 tgaggagggt ggatgaggat tggtgaactc ttcctgaatc tcaggaaaaa
2001 gcttatttgc agagtattca aaatactgca attttgtgga ccaatcaaag
2051 ggaagctctt tctggatcat ggagaggtac tcttctttgg aagtagcgtg
2101 tgaaataatg tctcgcatta tttcatcttt agaaggcttt ttttccttta
2151 cctctgaatc agattttcct aggaaggggg acttcctagg aatgaaagta
2201 cctctctcaa acacagccag aggttccttg agaatgtaat ccctcactct
2251 gttaactgac ttggcactct gaatatttgg gtgaaaccca tttatatcaa
2301 agaaccttga gtcagatatc cttaccggct tctctgtctg aagcaatgca
2351 tgtaaatgca aacttccatc tttatgtgcc tctcgggcac atagaatata
2401 cctgggaatc caacgaacga cgagctccca gatcatctga caggcgattt
2451 caggattttc tggacacttt ggataggtta ggaacgtgtt agcgttcctg
2501 tgtgagaact gacggttgga tgaggaggag gccatagcag acgacggagg
2551 ctgaggctga gggatggcag actgggagct ccaaactcta tagtataccc
2601 gtgcgccttc gaaatccgcc gctcccttgt cttatagtgg ttgtaaatgg
2651 gccggaccgg gccggcccag caggaaaaga aggcgcgcac