Sequence of DPV Pepino mosaic virus
Pepino mosaic virus strain EU-tomato, complete genome.
ACC No: FJ940223
Dated: 2009-05-26 | Length: 6420 | CRC: -1408526732
ID FJ940223; SV 1; linear; genomic RNA; STD; VRL; 6420 BP.
XX
AC FJ940223;
XX
DT 26-MAY-2009 (Rel. 100, Created)
DT 26-MAY-2009 (Rel. 100, Last updated, Version 1)
XX
DE Pepino mosaic virus strain EU-tomato, complete genome.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus.
XX
RN [1]
RA Van der Vlugt R.A.A., Cuperus C., Vink J., Stijger I.C.M.M., Lesemann D.E.,
RA Verhoeven J.Th.J., Roenhorst J.W.;
RT "Identifcation and characterization of Pepino mosaic potexvirus in tomato";
RL Bull. OEPP 32:503-508(2002).
XX
RN [2]
RP 1-6420
RA Van der Vlugt R.A.A., Van Raaij H.M.G., Dullemans A.M.;
RT ;
RL Submitted (16-APR-2009) to the EMBL/GenBank/DDBJ databases.
RL Biointeractions & Plant Health, Plant Research International,
RL Droevendaalsesteeg 1, Wageningen, Gelderland 6708 PB, The Netherlands
XX
FH Key Location/Qualifiers
FH
FT source 1. .6420
FT /organism="Pepino mosaic virus"
FT /host="tomato"
FT /strain="EU-tomato"
FT /mol_type="genomic RNA"
FT /country="Netherlands"
FT /collection_date="1999"
FT /note="type isolate of EU-tomato strain of Pepino mosaic
FT virus acronym: PepMV"
FT /db_xref="taxon:112229"
FT 5'UTR 1. .86
FT CDS 87. .4406
FT /codon_start=1
FT /product="polymerase protein"
FT /protein_id="ACR24263.1"
FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND
FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY
FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVDTRIAYISDSLHFMEPADVTHLFD
FT RCQNLKTLMATVVLPVEAIHRQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLE
FT WLKYSRFIGQDPLTGLKYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN
FT IFHPRHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH
FT VVNYFTYVSQLSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW
FT KDFSYTIKTEELVITTHTAIGQAISNAAATYKERMQLTQLVKKGTISLADFEQREPEIT
FT YTEFEPETRPQVDCVTNYNNAVKNLGLSALDEQPQCSSSNSHIPCNEISLAMTDDDNAA
FT AIHEIESLLSEPIIAPQLPALPHKTWASYASDTSSMKNREIENIIAELEISRKENNVQQ
FT TTHDYHAVSDTAQNSGGLPWKAWIPLLNAHGFKGDQLQYSPDGKVIQPIQDINNKTPRS
FT EYPSSIPADLVTTLRNIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCSQSKEWKESFA
FT FKMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLC
FT KLPMEHIKTFEKAMIQPGFPVVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVY
FT HESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASNA
FT LQKCKVPILVPSQMKKSAMQDIGHKSMTYAGCQGLTAQRVQILLDNHTQHCSDRVLYTC
FT LSRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDTYRDEKTEMLNSKPADDSPAEPEA
FT PLTHFPVSNGNNLEKLASALPEKFARELYDKHHGYSNTIQTENPVVQLFQHQQAKDETL
FT FWATIEARLSITTPEANLREFVLKKDVGDILFFNYHNVMCLPADPVDFEPRTWEICAAE
FT VKNTYLAKPMANLINAASRQSPDFDANKISLFLKSQWVKKVEKLGAVKSKPGQTIAAFM
FT QQTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDNLNQFVKQGWNFNRTAQTNDFTAF
FT DQSQDGAMLQFEVMKAKFFNIPADIIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANT
FT ECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFKKLQNKLKLTSKTLFPKQVKG
FT DYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDELHNY
FT LTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH"
FT CDS 4432. .5136
FT /codon_start=1
FT /product="TGB1 protein"
FT /protein_id="ACR24264.1"
FT /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI
FT SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK
FT LTIGELNARSNS"
FT CDS 5117. .5488
FT /codon_start=1
FT /product="TBG2 protein"
FT /protein_id="ACR24265.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH
FT SCYNTHSATNNTQPLSGHH"
FT CDS 5340. .5594
FT /codon_start=1
FT /product="TGB3 protein"
FT /protein_id="ACR24266.1"
FT /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN"
FT CDS 5633. .6346
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ACR24267.1"
FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
FT 3'UTR 6347. .6410
FT polyA_site 6411
XX
SQ Sequence 6420 BP; 2067 A; 1463 C; 1170 G; 1720 T; 0 other;
fj940223 Length: 6420 26-MAY-2009 Type: N Check: 6853 ..
1 gaaaacaaaa caaataaaca aatatacaaa gttaaactaa cacaacataa
51 ccacgtggaa aaacagcgaa agcactttac cacattatgt ctcgtgtcag
101 aaatactttg gaaaagatca gagacccaca agtacagtcc agcatttgtg
151 aagctgccta tcaacatgtt cgacctgtac ttaaagaatc tctaatcaat
201 tgtccttacg cgcttaatga ttatgaagca gacacccttg agaatcttgg
251 tgtcacaatt aacccccatg caatccaaac acacacacat gccgcagcca
301 aagtagtcga aaatcgtatg cttgaaattg ttggacatca cttgcctaaa
351 gatgaaaaag taactttcat cttcctcaaa cgtagcaagc tgcgttacat
401 gagaagagct gctgtgcata aagatgtctt tgtcaatcat aacattgaac
451 caaaagactt cttcaggtat gatgaagagt ctacatcaac cagcttttcc
501 gttgatacga gaatcgcata catttcagat tctctacact ttatggaacc
551 tgctgatgtg actcacttgt ttgaccgttg ccaaaacctt aaaacattga
601 tggcaactgt tgtactacct gtggaagcta tacacagaca gacatctcta
651 ttccctgcga tttactccat taactacaat gaagaaggct ttgagtatat
701 cccaggatca cacggtggtg gggcatattt ccacaaatat gaaaccctag
751 aatggctcaa atactctaga ttcattggac aagatccatt gactggttta
801 aaatacacca ttacgattca aatggtggag agtcttggtg ccaaccacct
851 tttcctcttc caaagaggaa actttgagac gccgctatac aggacgtttc
901 aaaagaatag ttttgtgaca ttcccaaata tattccatcc ccgacacgtc
951 aatgccacaa aacctatgcc tagatcaagg gccatacagc tgtacttata
1001 tgtgaaatca gtaaataaag ttacgcaaag agatatattt gccaaggtta
1051 gacaactgat ttccactgct gagctagaat tgtatgaccc tgatgaactc
1101 acgcatgttg taaattattt cacatatgtg tcacaactgt catctatcaa
1151 tgattatgac aacatgctca aatccagttt cttcaaaaaa ctggttgcac
1201 ccatgcaaca cgactggagg tgcatgattg aattcttccg gggaaagagt
1251 gacttcaatc aactgctcac agctcttcaa tggaaagatt tttcctatac
1301 tattaagact gaagagcttg taattactac acacactgct ataggacaag
1351 caataagcaa tgcagctgcc acatataaag aaagaatgca gctgactcaa
1401 ttggtcaaaa aaggtacaat atccttagca gattttgaac agagagaacc
1451 tgaaataact tacactgagt ttgagcctga aactaggccc caagtggact
1501 gcgttactaa ttataataat gcagttaaaa atttaggtct ttctgcactt
1551 gatgaacagc cccaatgttc atcttctaac agtcatatac cctgcaatga
1601 aatatcctta gcaatgactg atgacgacaa tgctgcggcc attcatgaaa
1651 ttgaatctct attgtctgaa ccgataatag ctcctcaact cccagcattg
1701 ccacacaaga catgggccag ttatgcttca gacacttcat ccatgaagaa
1751 ccgtgagatt gagaacataa ttgctgagct tgaaatctca cggaaggaaa
1801 ataatgtgca gcaaactact catgattacc atgctgtttc tgatactgct
1851 caaaactctg gaggtctccc atggaaagca tggattccac ttctgaatgc
1901 acacggcttt aagggagacc aacttcaata cagtcctgat ggcaaagtga
1951 ttcagccaat tcaggacatc aataacaaaa caccaagatc tgagtaccca
2001 tccagtattc ctgcagatct tgtaactaca ctgcgaaaca ttaaaagagc
2051 agtgtatgcc attcctatta gccatcgaag ggcaagtgct tacagctctg
2101 atatcaaaaa caataggacc ggcaaattac tctgttccca atcaaaagaa
2151 tggaaggaaa gttttgcttt caaaatgcaa catgaagaca tcgttaaatc
2201 tggagtagtc attcatggct gtggcggctc tggaaaatca caagcattac
2251 aaaactttct cagaactctt ggcgactcta atgactgctg cacagtggtt
2301 gtgccaactg ttgaactcag aaatgattgg gtgaacaaat tgtgtaagct
2351 acccatggaa cacattaaaa catttgaaaa agcaatgatt caaccaggat
2401 tcccagttgt tatctttgat gactacacta aattgccacc tggttacatt
2451 gaagcctatt tgttccacca tgccaacact gaacttttca ttcttactgg
2501 agactcgcgg caaagtgtat atcatgagtc caacaatgaa gcatacattg
2551 cctcattaga tgaagccgtc gcttattatg ctaactactg tggattttac
2601 ctaaatgcta cacacagaaa tgttcgcagt ttggccaata agctaggtgt
2651 ttacagtgag aaagaaggtc acctcaaaat tacctttgcc tcaaatgctc
2701 tacaaaagtg caaagtgcca attttggtgc cctctcaaat gaagaagagt
2751 gctatgcaag acatagggca caaatccatg acctacgctg ggtgtcaagg
2801 gcttactgca cagagagtcc aaattttgct tgacaaccac acacaacact
2851 gctcagacag ggtgctgtac acttgtctct ccagagctgt ggattccatc
2901 cactttatca atacaggccc aaacaattct gaattttggg acaagcttga
2951 ggcaacacca tacctcaaag catttattga tacttacaga gatgagaaaa
3001 cagaaatgct caattctaag cctgctgatg acagtcccgc tgagcctgaa
3051 gctccattga ctcactttcc agtgtcaaac ggcaataact tggaaaagtt
3101 agcttcagcg cttcctgaaa aatttgcaag agagttatat gataaacacc
3151 atggatactc taatacaatc caaactgaaa atccagtggt gcaacttttc
3201 cagcatcaac aagccaaaga tgaaacactt ttctgggcaa caatagaagc
3251 tagactttct attacaactc cggaagccaa cttacgagaa tttgtgctaa
3301 agaaagatgt tggagatatc ttgtttttca attaccacaa tgtcatgtgc
3351 ttacctgccg acccagtgga tttcgagcca agaacatggg aaatatgtgc
3401 tgctgaagtt aaaaatacat acttagccaa accaatggct aacttgatca
3451 atgctgctag cagacaatct cctgatttcg acgctaacaa aatttccctg
3501 ttcctaaaat ctcaatgggt caagaaagtg gaaaaattag gtgctgtcaa
3551 gtcaaagcct ggccagacca ttgcagcttt catgcaacaa acagtgatgt
3601 tgtatgggac catggccaga tacctcagaa agatgagaca aagatttcaa
3651 ccaaaacata ttttcatcaa ttgtgaaaca acaactgata atctgaacca
3701 atttgttaaa caaggttgga attttaacag aacagctcag acaaatgatt
3751 tcacagcttt tgaccaatca caagatggtg caatgcttca atttgaagtc
3801 atgaaggcaa aattcttcaa tatccctgcc gacatcattg aaggatacat
3851 caacatcaaa ttgaacgcca aaattttcct tggcacattg tccattatga
3901 ggttgtctgg tgaaggtcca acttttgatg ccaacacaga atgttcaata
3951 gcatatactg ctacaagata ccatcttgat tctacagtca agcaggttta
4001 tgctggagat gatatggcat tagatggagt tgtccaagaa aaaccctctt
4051 ttaaaaaact acagaacaag cttaaactca cctcaaagac actatttcca
4101 aaacaggtta aaggtgatta tgctgaattc tgtggttgga ctttcactcc
4151 tggtggtatc attaaaaacc ctttgaaaat gcatgcttcc attatgttgc
4201 aagaggcaat cggcaattta cacactgctg ccagatcata cgccattgac
4251 atgaagcatt cataccaaat gggtgatgag ctgcacaatt acttaacacc
4301 agatgaagct gaacaacact tccttgctgt tcggaagttg cacaagttac
4351 accaaggaga agcaatgaga cttggtgaaa agagccctcc aaaagcaaca
4401 cattgagggg ttaagttttc cccagttcga aatggaaaga tcaactctga
4451 ttaatttact tcaattgcac cacttcgagc caaaactcag tgttgaagga
4501 atcatagttg tgcacggaat tgcaggcact gggaaaacca ctttacttag
4551 gactttattt tctgcttacc ctagcttagt tataggttca cctaggcctt
4601 gctatttaga taaacaaaac aaaatttcac aagtttgctt atcttgcttt
4651 cccaataccc attgtgatat tgtcgatgag tatcatttgc tagaaagttt
4701 tccagaacca aaattggcta tctttggtga cccctgtcaa tgcacataca
4751 ttgagagact tagagtccca cattacactt ccttcagaac tcatagattt
4801 ggaaagtcaa ctgctgagat tttgaacaaa ctgtttgacc ttaatatagt
4851 ctcagttaag aaagaagacg acatcgttga attctttaac ccttttgaag
4901 ttgaccccac tgagcatatc tctgcctctg aagaagaagt cttggacttt
4951 gtttctgacc aagtggtgac cactagctca gaggaactag caggacttga
5001 gtttgcagaa acaactttct actgcacaac attggccgca gctgttgctg
5051 aaaatcctgc taagactttc atctctctga ctagacacac ccacaaactc
5101 accattgggg aactaaatgc caggtctaac tcctagagct gacctcactg
5151 acacatacaa aatcattgcc attgctttct tgttgtcagc ttgcatttac
5201 ttccaaaata gccactacca acctgttgct ggagacaact tgcaccgttt
5251 gccttttggt ggccaatatc aagacggcac caaaaagata tcttattttc
5301 cacaacagca gtcatacttt cattctggaa acaaattaaa tgtcctcata
5351 cttatcttca ttctcacatt gggtattgtc ctcaccaata aatttagttt
5401 tagctttagt cgtactactc accagcattc ttgctataac acacattcag
5451 caaccaacaa tacacaacca ttgtcaggtc atcattgacg gtgctgcaat
5501 agtcataaca aattgtgaga acacaccaga agtgcttaaa gcaatcaact
5551 tctccccttg gaacgggtta agttttccta aatttgaaaa ttaatattga
5601 gtgttcacaa aaatcaactt caataaacaa tcatgcctga cacaacacct
5651 gttgctgcca cttcaagtgc accacccaca gccaaagatg ctggtgccaa
5701 agctccttct gacttctcaa atcccaatac agctcctagt ctcagtgatt
5751 tgaagaaagt caagtatgtc tccaccgtga cctccgtggc cacaccagct
5801 gaaattgaag ccctaggcaa aatcttcacc gctatgggcc ttgccgccaa
5851 tgagactggt ccggccatgt gggatctagc tcgtgcatat gctgatgtgc
5901 agagttctaa atcggcacag ctgattggag ctaccccttc caaccctgca
5951 ctatcacgcc gagcccttgc tgctcagttt gatcgaatca atataacccc
6001 caggcaattt tgcatgtact ttgccaaagt tgtttggaac atacttctcg
6051 acagcaacat tccaccagca aattgggcca aacttggtta ccaagaagat
6101 acaaaatttg ctgcatttga cttcttcgat ggagtcacca accctgccag
6151 cctgcagcct gctgatggtc ttatcaggca gccaaatgag aaagaactag
6201 ctgctcactc cgtagctaag tacggcgcct tggctaggca aaagatctcc
6251 acaggtaatt atattaccac acttggagaa gtcacacgtg gacacatggg
6301 aggagctaac accatgtacg cgatagacgc accccctgaa ctttaaacac
6351 tcgaaactta atcagagtgg ggttttctac agtttatttt cctaattatt
6401 tctttgaaat aaaaaaaaaa