Sequence of DPV Lujo virus
Lujo virus segment S glycoprotein precursor and nucleocapsid protein genes, complete cds.
ACC No: FJ952384
Dated: 2009-06-29 | Length: 3189 | CRC: -521098887
ID FJ952384; SV 1; linear; genomic RNA; STD; VRL; 3189 BP.
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AC FJ952384;
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DT 05-JUN-2009 (Rel. 101, Created)
DT 29-JUN-2009 (Rel. 101, Last updated, Version 2)
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DE Lujo virus segment S glycoprotein precursor and nucleocapsid protein genes,
DE complete cds.
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KW .
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OS Lujo virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC unclassified Arenaviridae.
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RN [1]
RC Publication Status: Online-Only
RP 1-3189
RX DOI; 10.1371/journal.ppat.1000455.
RX PUBMED; 19478873.
RA Briese T., Paweska J.T., McMullan L.K., Hutchison S.K., Street C.,
RA Palacios G., Khristova M.L., Weyer J., Swanepoel R., Egholm M.,
RA Nichol S.T., Lipkin W.I.;
RT "Genetic detection and characterization of Lujo virus, a new hemorrhagic
RT fever-associated arenavirus from southern Africa";
RL PLoS Pathog. 5(5):E1000455-E1000455(2009).
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RN [2]
RP 1-3189
RA Briese T., Lipkin W.I.;
RT ;
RL Submitted (22-APR-2009) to the EMBL/GenBank/DDBJ databases.
RL Center for Infection and Immunity, MSPH, Columbia University, 722 West,
RL 168th Street, New York, NY 10032, USA
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FH Key Location/Qualifiers
FH
FT source 1. .3189
FT /organism="Lujo virus"
FT /segment="S"
FT /host="Homo sapiens"
FT /mol_type="genomic RNA"
FT /country="South Africa:Zambia"
FT /collection_date="Oct-2008"
FT /db_xref="taxon:649188"
FT CDS 8. .1372
FT /codon_start=1
FT /product="glycoprotein precursor"
FT /note="GPC"
FT /protein_id="ACR56359.1"
FT /translation="MGQIVAVFQAIPEILNEAINIVIIVIIMFTLIKGVFNLYKSGLFQ
FT LVIFLLLCGKRCDSSLLSGFNLETVHFNMSLLSSIPMVSEQQHCIQHNHSSITFSLLTN
FT KSDLEKCNFTRLQAVDRVIFDLFREFHHRVGDFPVTSDLKCSHNTSYRVIEYEVTKESL
FT PRLQEAVSTLFPDLHLSEDRFLQIQAHDDKNCTGLHPLNYLRLLKENSETHYKVRKLMK
FT LFQWSLSDETGSPLPGGHCLERWLIFASDIKCFDNAAIAKCNKEHDEEFCDMLRLFDYN
FT KASIAKLRGEASSSINLLSGRINAIISDTLLMRSSLKRLMGIPYCNYTKFWYLNHTKLG
FT IHSLPRCWLVSNGSYLNETKFTHDMEDEADKLLTEMLKKEYVRRQEKTPITLMDILMFS
FT VSFYMFSVTLCICNIPTHRHITGLPCPKPHRLRKNGTCACGFFKSINRSTGWAKH"
FT CDS complement(1444. .3120)
FT /codon_start=1
FT /product="nucleocapsid protein"
FT /note="NP"
FT /protein_id="ACR56360.1"
FT /translation="MSQSKEVKSFLWLQTLRRELSPFCTDVRAKVVKDAVSLINGLDFS
FT MVSDVQRLMRKDKRNDEDLMKLRELNQTVDGLVDLKSSNKKNRVGVGKLTSDELMILAT
FT DLEKLKKKVTRTEARGPGVYRGNLSQDQLGRRSELLNMIGMGTPRPTRNTVVRVWDVKD
FT SSLLNNQFGTMPSLTLACLTRQTRVDLNDSVQACVDLGLIYTAKFPNMDDLDKLKNKHP
FT VLDYVSNCDSAINISGYNLSLASLVKAGASLMKGGDMLETIELNSRNIDDVIKATLTAR
FT NKVQMFVSEVPGERNPYENLLYKICLSGEGWPYISSRTSIKGRSWDNTVIDMTPKDPTP
FT PQNERAKAPHQFPVGVSFSQSQLLDDIMKNLNPKGRTWMDIEGRPDDPVEIAIFQPEER
FT LCLHFYREPTDQKQFKNDSKYCHGMDFTQLCSTQPGLTTAVLERLPLGMVITCQGKDDI
FT EKLLHSQGRRDVKFIDIQMSKEASRKFEDQVWDSYKTFCNQHTGIVVTKSKKGKKEITP
FT HCALMDCIMYESAVNGQLYQEPIRNLLPADMIFRTAAKLSL"
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SQ Sequence 3189 BP; 812 A; 756 C; 694 G; 927 T; 0 other;
fj952384 Length: 3189 29-JUN-2009 Type: N Check: 7492 ..
1 agcttggatg gggcagattg ttgccgtttt ccaagctatc cctgagattc
51 taaacgaggc aattaacatt gtgataattg tgatcataat gttcaccctc
101 atcaagggcg ttttcaatct atacaaatcc ggtcttttcc agctggtcat
151 ctttctccta ctctgtggca agcgttgtga ctcatcattg ctatcaggat
201 tcaatctgga gacagttcat ttcaacatgt cactgttgag ctccatccct
251 atggtctctg aacagcagca ctgcatccag cacaatcaca gctccataac
301 cttcagtttg ctgaccaaca agtccgactt ggaaaagtgc aatttcaccc
351 gcctgcaagc tgttgacagg gtgatctttg atctgttcag agagtttcat
401 caccgtgttg gggattttcc tgttacttct gatctgaaat gctctcacaa
451 caccagctac agagtgatag aatatgaagt caccaaagag agtctccctc
501 gattgcagga agctgtgagc accttgttcc cagacctcca tctctccgaa
551 gataggtttc tgcaaattca ggcccatgat gacaagaact gcactggtct
601 acacccattg aactacctga ggctcctgaa agagaattca gaaacccact
651 acaaagtgag gaaattaatg aaattgtttc agtggtcttt gagtgatgag
701 acaggtagcc ctctgccagg tggacactgt ctagaaagat ggctcatctt
751 tgcgtctgat ataaagtgct ttgataatgc agcgattgcc aaatgcaata
801 aagagcatga tgaggagttc tgtgacatgt tgaggctatt tgactacaac
851 aaagcaagta ttgccaagct taggggcgaa gcctcaagct cgatcaactt
901 gttgtcgggg agaatcaatg ccatcatttc agacacactt ttgatgagat
951 catccctcaa gaggctgatg ggcataccat actgcaatta tacaaagttc
1001 tggtatttaa accatacaaa actggggata cattctttac cccgatgttg
1051 gctggttagt aatgggagtt acctcaacga aacaaaattt actcatgata
1101 tggaagatga ggcagataaa ctgctgaccg agatgctaaa gaaagagtat
1151 gttaggagac aagagaaaac acccattact ctgatggaca tactgatgtt
1201 tagtgtctct ttctatatgt tttctgtaac actatgcata tgcaacatac
1251 ccacccatcg gcacatcaca ggtttgccgt gtcccaaacc acacagactc
1301 agaaagaatg gcacctgtgc ctgtggcttc tttaagtcaa taaacaggtc
1351 cactggttgg gccaaacact gagagtccca acacagggac cccatgaccg
1401 tcactccgct ttgcggagtg acggtcatgg ggtccgtgga gactcacaga
1451 ctcagcttgg ctgctgttct gaagatcatg tctgcaggca gcaagttcct
1501 tatgggctct tggtaaagtt gcccattcac tgctgattca tacatgatac
1551 agtccatcag tgcacaatgt ggtgtaatct ctttcttccc tttcttggac
1601 ttggtcacaa caattccagt atgctggttg caaaaggtct tgtatgagtc
1651 ccaaacctgg tcctcgaact ttctagaggc ctcttttgac atttgaatat
1701 caatgaattt cacgtccctt ctaccttgac tgtgaaggag tttttcaatg
1751 tcatccttcc cctgacaggt tatcaccatg ccaaggggga gtctttccaa
1801 cactgctgtg gttagtccag gttgggtgga gcaaagctga gtgaaatcca
1851 tgccatgaca gtacttgctg tcatttttga attgtttttg atccgtgggc
1901 tctctgtaga agtggaggca aagtctttct tctggctgga atattgctat
1951 ctccaccgga tcatcaggtc taccttcaat gtccatccat gttctcccct
2001 tggggttcag gtttttcata atgtcatcta agagttgaga ttggctgaag
2051 ctcacaccca caggaaattg gtggggggct tttgctcttt cgttctgtgg
2101 aggtgtaggg tcctttggag tcatatcaat gactgtgttg tcccaggatc
2151 tgccttttat gctggttctg gaagagatgt atggccaacc ctcacctgat
2201 aagcagatct tgtatagtag attctcatac gggtttcttt ctcctggaac
2251 ctcagacaca aacatctgta ctttgttcct tgcagttaga gttgccttga
2301 tcacgtcatc aatatttctg ctgttcaatt caatggtctc caacatgtct
2351 cctcccttca tgagagacgc accagctttg accaatgaag caagactcaa
2401 gttgtaacct gaaatgttga tcgcagaatc acaattgctt acatagtcta
2451 aaactggatg cttgttcttt agcttgtcca gatcatccat gttgggaaac
2501 tttgcggtgt aaatgaggcc cagatctaca caggcttgga cactatcatt
2551 cagatctacc cttgtctgtc tggttaaaca ggccagtgtc agacttggca
2601 tagtgccaaa ctgattgttc aggagagaag agtctttgac gtcccagacc
2651 ctcacaactg tgttccttgt tggcctcggg gtgcccatac caatcatgtt
2701 gaggagctct gacctcctgc ccaattgatc ctgactcaga ttccccctat
2751 agactccagg gcctctggct tcggtcctgg tcaccttctt tttgagtttc
2801 tccagatctg ttgccagaat catcaactca tcagaggtta gtttcccaac
2851 accaaccctg ttcttcttat tgctcgattt aaggtccacc aagccatcca
2901 ctgtctggtt caattctctc aatttcatta ggtcctcgtc attcctttta
2951 tcctttctca tgagtctctg gacatcggac accatagaga aatcaaggcc
3001 gttgatcaga ctcacggcat ccttgacaac tttggctctc acgtccgtgc
3051 aaaacgggga gagctctctt ctcagagtct gtaaccaaag gaaggatttc
3101 acttcttttg attgggacat attgtgagac aagatgtcga caagcgcaga
3151 agagaaagct cactggagga agtaagtgtc ctataaacg