Sequence of DPV Tomato leaf curl Oman virus
Tomato leaf curl Oman virus isolate Alb22, complete genome.
ACC No: FJ956700
Dated: 2011-03-09 | Length: 2763 | CRC: -1347267955
ID FJ956700; SV 1; circular; genomic DNA; STD; VRL; 2763 BP.
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AC FJ956700;
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DT 27-SEP-2010 (Rel. 106, Created)
DT 09-MAR-2011 (Rel. 108, Last updated, Version 2)
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DE Tomato leaf curl Oman virus isolate Alb22, complete genome.
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KW .
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OS Tomato leaf curl Oman virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2763
RA Idris A.M., Brown J.K.;
RT "A novel recombinant species of begomovirus is associated with tomato leaf
RT curl disease in Oman: molecular characterization and infectivity analysis";
RL J. Gen. Virol. 0:0-0(2010).
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RN [2]
RP 1-2763
RX PUBMED; 21084498.
RA Idris A.M., Shahid M.S., Briddon R.W., Khan A.J., Zhu J.K., Brown J.K.;
RT "An unusual alphasatellite associated with monopartite begomoviruses
RT attenuates symptoms and reduces betasatellite accumulation";
RL J. Gen. Virol. 92(PT 3):706-717(2011).
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RN [3]
RP 1-2763
RA Idris A.M., Brown J.K.;
RT ;
RL Submitted (22-APR-2009) to the EMBL/GenBank/DDBJ databases.
RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2763
FT /organism="Tomato leaf curl Oman virus"
FT /host="Solanum lycopersicum L. (tomato)"
FT /isolate="Alb22"
FT /mol_type="genomic DNA"
FT /country="Oman"
FT /collection_date="2005"
FT /db_xref="taxon:713949"
FT CDS 148. .498
FT /codon_start=1
FT /product="V2"
FT /note="precoat"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:E1U820"
FT /protein_id="ADC79149.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEQTYEPNTLGHDLIRDL
FT ISVIRARDYVEASRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATVMDVQAHV
FT PKAQNIQNVSKP"
FT CDS 308. .1084
FT /codon_start=1
FT /product="V1"
FT /note="Coat protein"
FT /db_xref="GOA:E1U821"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:E1U821"
FT /protein_id="ADC79150.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT CDS complement(1081. .1485)
FT /codon_start=1
FT /product="C3"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:E1U822"
FT /protein_id="ADC79154.1"
FT /translation="MDSRTGELITAHQAQNGVFIWEIENPLYFKITNHDERPFLMSHDI
FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLRPQTGRFLRVFRYQVLKYLDSLGVISINN
FT VIRAVDHVLYDVLENTINVTESHDIKYKFY"
FT CDS complement(1226. .1633)
FT /codon_start=1
FT /product="C2"
FT /db_xref="GOA:E1U823"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:E1U823"
FT /protein_id="ADC79153.1"
FT /translation="MQPSSPSTSHCSQVPIKIQHRIAKTKAVRRKRIDLDCGCSYYLHI
FT NCINHGFTHRGTHHCSSSPEWRFYMGDRKSPVFQDHQPRREAISNEPRHHFHSDKIQSQ
FT YQEGTGDSQMFSQLPNLDDLTASDWSFLKSI"
FT CDS complement(1557. .2621)
FT /codon_start=1
FT /product="C1"
FT /note="Rep"
FT /db_xref="GOA:E1U824"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:E1U824"
FT /protein_id="ADC79151.1"
FT /translation="MPRINSFCVNTKNIFLTYPKCPIPKEQMLEILQSINCPSDKLFIR
FT VSREKHQDGSLHIHALIQFKGKAKFRNPRHFDVTHPNNSSQFHPNFQGAKSSSDVKSYI
FT EKNGDYIDWGQFQIDGRSARGGQQTANDAAAEALNACSAEEALSIIREKLPKDFIFQYH
FT NLKCNLDRIFQEPPAPYISPFLSSSFNQVPEELEVWVSENVMSSAARPWRPNSIIIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSTDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNISLKNWALKNATFVTLYEPL
FT FSSANQNPTPHSED"
FT CDS complement(2207. .2464)
FT /codon_start=1
FT /product="C4"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:E1U825"
FT /protein_id="ADC79152.1"
FT /translation="MGLCISTPSSSSKVKPSSETPDISMSLTLITPPNSTQTSREQSPA
FT PMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMQQQRP"
XX
SQ Sequence 2763 BP; 748 A; 548 C; 631 G; 836 T; 0 other;
fj956700 Length: 2763 09-MAR-2011 Type: N Check: 3268 ..
1 accggatggc cgcgcctttt ccctttatgt gggccccacg tgggccccac
51 acatgtcact gtcaaccaat caaattttag cctggaacgt tagataactg
101 tcctgttgtc tttatatact tggtccccaa gtagtttgtc ttccaaaatg
151 tgggaccctc ttctgaatga atttccggaa tctgttcacg gatttcgttg
201 tatgctagcc ataaaatatt tgcaggccgt tgagcaaaca tacgagccca
251 atactttggg ccacgattta attagggatc ttatttctgt tataagggcc
301 cgtgattatg tcgaagcgtc ccggcgatat aatcatttcc acgcccgtct
351 cgaaggttcg ccgaaggctg aacttcgaca gcccatacag cagccgtgct
401 gctgtcccca ttgtccaagg cacaaacaag cgacggtcat ggacgtacag
451 gcccatgtac cgaaagccca gaatatacag aatgtatcga agccctgatg
501 ttccccgtgg atgtgaaggc ccatgtaaag tccagtctta tgagcaacgg
551 gatgatgtta agcatactgg tattgttcgt tgtgttagtg atgttactcg
601 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga
651 tatatttttt aggtaaagtc tggatggatg aaaatatcaa gaagcagaat
701 cacactaatc aggtcatgtt cttcttggtc cgtgatagaa ggccctatgg
751 aagcagccca atggattttg gacaggtttt taatatgttt gataatgagc
801 ccagtaccgc aaccgtgaag aatgacttgc gggataggtt tcaagtgatg
851 aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca
901 ggcattagtt aagagatttt ttagaattaa cagtcatgta acttataatc
951 atcaggaggc agccaagtac gagaaccata ctgaaaacgc cttgttattg
1001 tatatggcct gtactcatgc ctctaatcca gtgtatgcaa ctatgaaaat
1051 acgcatctat ttctatgatt caatatcaaa ttaataaaat ttatatttga
1101 tatcatgact ttctgttaca tttattgtgt tttcaagtac atcatacaat
1151 acatgatcaa ctgctctgat tacattgtta atggaaatta ctccaagact
1201 atctaaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag
1251 tctgaggccg taaggtcgtc cagattcgga agttgagaaa acatttgtga
1301 atccccagta ccttcctgat attgtgattg aatcttatct gaatggaaat
1351 gatgtcgtgg ctcattagaa atggcctctc gtcgtggttg gtgatcttga
1401 aatacagggg attttctatc tcccatataa aaacgccatt ctgggcttga
1451 tgagcagtga tgagttcccc ggtgcgtgaa tccatgattg atgcagttga
1501 tgtggaggta atatgagcat ccgcagtcga ggtctatgcg cttacgtctg
1551 actgccttag tcttcgctat gcggtgttgg attttgattg gcacttgaga
1601 acagtggctc gtagagggtg acgaaggttg cattcttgag agcccaattt
1651 tttaatgata tgtttttttc ttcgtctaga tattccttat atgatgaggt
1701 aggtcctgga ttgcagagga agatagtggg aataccccct ttaatttgaa
1751 tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg
1801 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt
1851 gtaccacgca tcagtactgt acacctttgg acttaggtct aaatggccac
1901 acaaataatt atgtgggcct agagacctgg cccacattgt tttgccggtc
1951 ctgctatcac cctcgatgat aatactatta ggtctccatg gccgcgcagc
2001 ggaagacatg acgttctcgg acacccagac ttcaagttcc tcaggaactt
2051 ggttaaaaga agaagataaa aaaggagaaa tataaggagc cggtggctcc
2101 tgaaaaatcc tatctaaatt acattttaaa ttatgatatt gaaaaataaa
2151 atcttttggg agtttttccc ttattattga taaagcctct tccgccgaac
2201 atgcatttag ggcctctgct gctgcatcat tagctgtctg ttgacctcct
2251 cgagcagatc ttccatcgat ctgaaactga ccccagtcga tgtaatcacc
2301 gttcttctcg atgtaggact tgacatcgga gctggacttt gctccctgga
2351 agtttgggtg gaattgggag gagttattag ggtgagtgac atcgaaatgt
2401 ctggggtttc tgaacttggc tttacctttg aactggatga gggcgtggat
2451 atgcagagac ccatcttggt gtttttctcg tgacactctg ataaataatt
2501 tatcagatgg gcaatttatt gactgaagaa tttcgagcat ttgctctttg
2551 ggtattgggc attttggata agtgaggaaa atatttttgg tatttacaca
2601 aaaagagtta atacgaggca tattgaattg gggacactca aaactctgag
2651 gaatggggga ctctggggac gcatttatat gaagtcccca aatggcatgt
2701 tcgtaattac gaaagaaatt tcaaaatcct accgctccaa aaagcggcca
2751 tccgtataat att