Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus isolate Alb34, complete genome.
ACC No: FJ956705
Dated: 2011-03-09 | Length: 2765 | CRC: -782604745
ID FJ956705; SV 1; circular; genomic DNA; STD; VRL; 2765 BP.
XX
AC FJ956705;
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DT 27-SEP-2010 (Rel. 106, Created)
DT 09-MAR-2011 (Rel. 108, Last updated, Version 2)
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DE Tomato yellow leaf curl virus isolate Alb34, complete genome.
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KW .
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OS Tomato yellow leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2765
RA Idris A.M., Brown J.K.;
RT "A novel recombinant species of begomovirus is associated with tomato leaf
RT curl disease in Oman: molecular characterization and infectivity analysis";
RL J. Gen. Virol. 0:0-0(2010).
XX
RN [2]
RP 1-2765
RX PUBMED; 21084498.
RA Idris A.M., Shahid M.S., Briddon R.W., Khan A.J., Zhu J.K., Brown J.K.;
RT "An unusual alphasatellite associated with monopartite begomoviruses
RT attenuates symptoms and reduces betasatellite accumulation";
RL J. Gen. Virol. 92(PT 3):706-717(2011).
XX
RN [3]
RP 1-2765
RA Idris A.M., Brown J.K.;
RT ;
RL Submitted (22-APR-2009) to the EMBL/GenBank/DDBJ databases.
RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2765
FT /organism="Tomato yellow leaf curl virus"
FT /host="Solanum lycopersicum L. (tomato)"
FT /isolate="Alb34"
FT /mol_type="genomic DNA"
FT /country="Oman"
FT /collection_date="2005"
FT /db_xref="taxon:10832"
FT CDS 131. .481
FT /codon_start=1
FT /product="V2"
FT /note="precoat"
FT /db_xref="GOA:B4YT03"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:B4YT03"
FT /protein_id="ADC79179.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPLQQPCCCPHCPRHKQAPIMDVQAHV
FT PKAQNIQNVSKP"
FT CDS 291. .1067
FT /codon_start=1
FT /product="V1"
FT /note="Coat protein"
FT /db_xref="GOA:E1U851"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:E1U851"
FT /protein_id="ADC79180.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGINKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQLFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT CDS complement(1064. .1468)
FT /codon_start=1
FT /product="C3"
FT /note="REn"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:E1U828"
FT /protein_id="ADC79184.1"
FT /translation="MDSRTGELITAHQAQNGVFIWEIENPLYFKITNHDERPFLMSHDI
FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDNLGVISINN
FT VIRAVDHVLYDVLENTINVTESHDIKYKFY"
FT CDS complement(1209. .1616)
FT /codon_start=1
FT /product="C2"
FT /note="TrAP"
FT /db_xref="GOA:E1U829"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:E1U829"
FT /protein_id="ADC79183.1"
FT /translation="MQPSSPSTSHCSQVPIKIQHRIAKTKPVRRKRIDLDCGCSYYLHI
FT NCINHGFTHRGTHHCSSSPEWRFYMGDRKSPVFQDHQPRREAISNEPRHHFNTDKIQSQ
FT HQEGTGDSQMFSQLPNLDDITASDWSFLKSI"
FT CDS complement(1540. .2604)
FT /codon_start=1
FT /product="C1"
FT /note="Rep"
FT /db_xref="GOA:E1U830"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:E1U830"
FT /protein_id="ADC79181.1"
FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKKEALSQLLNLQTPTSKKFIR
FT ICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYM
FT EKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKAQALNILKEKAPRDFLLQFH
FT NLNSNLDRYFQEPPAPYISPFLSSSFNQVPEELEVWVSENVMSSAARPWRPNSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNVIDDVNPHYLKHFKELMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPL
FT FSSANQNPTPHSED"
FT CDS complement(2154. .2429)
FT /codon_start=1
FT /product="C4"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:E1U831"
FT /protein_id="ADC79182.1"
FT /translation="MFSSNSKESSSARTIDSSTSPPQPGQHISIRTFRELKAQAMSKPT
FT WRKTETSLIMEFSRSMEDQLEEVANLPTTHMPRQSTQGPKLRPSIY"
XX
SQ Sequence 2765 BP; 742 A; 531 C; 624 G; 868 T; 0 other;
fj956705 Length: 2765 09-MAR-2011 Type: N Check: 8776 ..
1 accggatggc cgcgcgcccc acgtgggtcc cacacacgtc gctatcatcc
51 aatcaaattg atgactgaaa cgttagataa ttgtttattt gtctttataa
101 acttagtccc caagtttgtt gtcttgcaat atgtgggatc cacttcttaa
151 tgaatttcct gaatccgttc acggatttcg ttgtatgtta gctattaaat
201 atttgcaggc cgttgaggaa acgtatgagc ccaacacttt gggccacgat
251 ttaattaggg atcttatatc tgttgtaagg gctcgtgact atgtcgaagc
301 gacccggcga tataatcatt tccacgcccg tctcgaaggt tcgccgaagg
351 ctgaacttcg acagccccta cagcagccgt gctgctgccc ccattgtcca
401 aggcataaac aagcgccgat catggacgta caggcccatg taccgaaagc
451 ccagaatata cagaatgtat cgaagccctg atgttccccg tggatgtgaa
501 ggcccatgta aagtccagtc ttatgagcaa cgggatgata ttaagcatac
551 tggtattgtt cgttgtgtta gtgatgttac tcgtggatcc ggaattaccc
601 acagagtggg taagaggttc tgtgttaaat ccatatattt tttaggtaaa
651 gtttggatgg atgaaaatat caagaagcag aatcacacta atcaggtcat
701 gttcttcttg gtccgtgata gaaggcccta tggaaacagc ccaatggatt
751 ttgggcagct ttttaatatg ttcgataatg agcctagtac cgcaaccgtg
801 aagaatgatc tccgggatag gtttcaagtg atgaggaaat ttcatgctac
851 agttattggt gggccctctg gaatgaagga acaggcatta gttaagagat
901 tttttagaat taacagtcat gtaacttata atcatcagga ggcagccaag
951 tatgagaatc atactgagaa tgctttgttg ttgtatatgg catgtactca
1001 tgcctctaat ccagtgtatg caactatgaa aatacgcatc tatttctatg
1051 attcaatatc aaattaataa aatttatatt ttatatcatg actttcggtt
1101 acatttattg tgttttcaag tacatcatat aatacatgat caactgctct
1151 gattacattg ttaatggaaa ttacaccaag attatctaaa tacttaagaa
1201 cttgatatct aaatactctt aagaaacgac cagtctgagg ctgtaatgtc
1251 gtccaaattc ggaagttgag aaaacatttg tgaatcccca gtaccttcct
1301 gatgttgtga ttgaatctta tctgtattga aatgatgtcg tggctcatta
1351 gaaatggcct ctcgtcgtgg ttggtgatct tgaaatacag gggattttcg
1401 atctcccata taaaaacgcc attctgggct tgatgagcag tgatgagttc
1451 ccctgtgcgt gaatccatga ttgatgcagt tgatgtggag gtaatatgag
1501 catccgcagt cgaggtctat gcgctttcgt ctgactggct tagtcttcgc
1551 tatgcggtgt tggattttga ttggcacttg agaacagtgg ctcgtagagg
1601 gtgacgaagg ttgcattctt gagagcccaa ttttttaagg atatgttttt
1651 ttcttcgtct agatattccc tatatgagga ggtaggtcct ggattgcaga
1701 gaaagatagt gggaattccc cctttaattt gaatgggttt cccgtatttt
1751 gtgttgcttt gccagtccct ctgggccccc attaattcct tgaagtgctt
1801 taaataatgc gggtttacgt catcaatgac gttaaaccac gcatcattac
1851 tgtatacctt tggacttagg tctagatgtc cacataaata attatgtggg
1901 cctagagacc tggcccacat tgttttgcct gttctgctat caccctcgat
1951 gacaatacta ttaggtctcc atggccgcgc agcggaagac atgacgttct
2001 ccgacaccca tacttctagt tcctctggaa cttgattaaa agatgaagat
2051 aaaaagggag aaatataagg agccggaggc tcctgaaaat acctatctaa
2101 attactattt aaattatgaa attggagtag aaagtctctt ggggctttct
2151 ccttcagtat attgagggcc tgagctttgg accctgcgtt gattgcctcg
2201 gcatatgcgt cgttggcaga ttggcaacct cctctagctg atcttccatc
2251 gacctggaaa actccatgat caaggatgtc tccgtctttc tccatgtagg
2301 ttttgacatc gcttgagctt ttagctccct gaatgttcgg atggaaatgt
2351 gctgacctgg ttggggaggt gaggtcgaag aatctattgt tcttgcactg
2401 gaactttcct tcgaattgga tgagaacatg caagtgagga gtcccatctt
2451 cgtgaagctc tctgcagatt ctaatgaatt ttttggaagt gggtgtttgg
2501 agatttaata attgggaaag tgcttctttt ttagtaagag agcacttggg
2551 atatgtgaga aaataatttt tggcatttat tttaaaccga ttgggggctg
2601 ccatgctgac ttagtcaatc ggtgtctcgc aatttgctct atgtatcggt
2651 gtactggagt cctatatata tggagactcc aatggcataa ttgtaatttc
2701 gtaaaagcat ttttaaaagt aaaattcaaa aatcaaaatc ctaaagcggc
2751 catccatata atatt