Sequence of DPV Sweet potato mild mottle virus
Sweet potato mild mottle virus isolate KAP90 polyprotein gene, partial cds.
ACC No: FJ999762
Dated: 2010-03-19 | Length: 7784 | CRC: -1872566815
ID FJ999762; SV 1; linear; genomic RNA; STD; VRL; 7784 BP.
XX
AC FJ999762;
XX
DT 25-JAN-2010 (Rel. 103, Created)
DT 19-MAR-2010 (Rel. 104, Last updated, Version 2)
XX
DE Sweet potato mild mottle virus isolate KAP90 polyprotein gene, partial cds.
XX
KW .
XX
OS Sweet potato mild mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
XX
RN [1]
RP 1-7784
RX PUBMED; 19923261.
RA Tugume A.K., Mukasa S.B., Kalkkinen N., Valkonen J.P.;
RT "Recombination and selection pressure in the ipomovirus sweet potato mild
RT mottle virus (Potyviridae) in wild species and cultivated sweetpotato in
RT the centre of evolution in East Africa";
RL J. Gen. Virol. 91(PT 4):1092-1108(2010).
XX
RN [2]
RP 1-7784
RA Tugume A.K., Mukasa S.B., Valkonen J.P.T.;
RT ;
RL Submitted (30-APR-2009) to the EMBL/GenBank/DDBJ databases.
RL Department of Applied Biology, University of Helsinki, PO Box 27
RL (Latokartanonkaari 7), FIN-00014, Helsinki, Finland
XX
FH Key Location/Qualifiers
FH
FT source 1. .7784
FT /organism="Sweet potato mild mottle virus"
FT /host="Ipomoea spathulata"
FT /isolate="KAP90"
FT /mol_type="genomic RNA"
FT /country="Uganda:Kapchorwa"
FT /collection_date="01-Apr-2007"
FT /db_xref="taxon:41459"
FT 5'UTR 1. .139
FT CDS 140. .>5867
FT /codon_start=1
FT /product="polyprotein"
FT /note="coding region disrupted by sequencing gap"
FT /db_xref="UniProtKB/TrEMBL:D2T0B8"
FT /protein_id="ACS29481.1"
FT /translation="MGKPKLTYRQCIAKWGKAALEAQNNGSKRSVPVGTHQIAANVFAF
FT YDVKDYHLFSMGKRGGLTPAAEQLIIATERGTIYKVQYDCHFCPDCDAVVDSDEGWYCE
FT DCGSQFNKRDDNVLGNKNDVARALGGWTEYEDATWASLEAAKADMLEVAPTVGQLEKEI
FT RAIEKSAGKRLTAKKKEMLEELAYKLDVAKMNEEEQETVSEEAVFSISNDEFPTLERPQ
FT AEVVNESIEEHTEENAIEVASKVGKFVESESTDKTTDEPICDAADAHVVMTPAVTLSTT
FT NSGMVIDKEKLVEKPRIVAWVTKLKTPAAVPAVPSKSAVWVAKPRLASILPTVEPVAKS
FT TVKACGNVINIGAMVCPITVAAIESHSHQNEKLTEASDAQVNDATKEDEPVVKYNITFG
FT SFNYEVSAKGEQVQAAVQLDEMIEGPDTEPILICQTGSSHKSETKKAAKGLFVQDRFSV
FT IGNKVLCKSFPAFKNFMNETRLGGIYRTRKGNYKNAALRLLKATKVQVFYDGIKDIFEC
FT PYCHISSNELEGLNGDNCEKCKDLFYKHIDDPRKVEEEYLMVPLVPIDQHVHEEHSIIS
FT KAKWEAHESICEGEVDIVKIFDGKPTASKKRFKTKRAPNVANVPLDDFMQELVEICLER
FT NTPIEIIGGVKFFNVVKLRHTTRDISKSGEDDMYPTEREWFCHKNKLCLCGKIDREKKV
FT KSSEVRPGWSGVILHRDQVAECDWNKFVFIDDICVVQGRNLITSKIENALEKKGATRLK
FT QIQFYASSVVPNFKDEFDRASRLKADHEPDESSNNELVGRLAKLVAAVIPKGHLYCKTC
FT CYRVIKSKRVDIVNALNKAKQRGERDEFIYDELIKLFELQAPPPYKIATIINDDDMLRT
FT LGLGGELYSGRLSLIMQHLQGLHTSISMLHQSLAGAQNDQQIDRQALHDQVRILHQRNE
FT EHMPFLKKAVDEIQLLNATDQVANARELYLDTRATSTGDFDILRKYQSIYEFFPNVMSR
FT ANKAGMAVIKSETSLSKAFALMNSAKSMNAVHTLIGENVIEPYDGACLLRNDKTCFSIG
FT CKQSVDGSKMYVPLCPTKQHVRIHRVESNMQIPLPTFHDATVWEFNEGYCYANQFAIMV
FT GFVNEDEMEFYKNQMNQVVLNLGAWPTFEQYLIELRAISLDYPKVRGCPAAIHLVSHAN
FT KLIHVLGQFGTINQGWHALEVATVGELVDLCHKKVEGEMLTYKVGGIYDWVTKKNAFID
FT LFEHHPENIFKVCTSPSVLWLFARSCEKHDFINYIMARDHSLVGLFVKLEYVGKHLHIF
FT QSVDDVCVEYAASMREIIEEHADIHGLRDSVVDRMVHAYHNEVREANKYELVDRILEKN
FT IGLVAKEISSRKLITMYHQDLFSWHEWQRLKLMPHSLNAQKLFEEANERAYGKQSWNLR
FT VIWGACKEVLYAVTRGAYVRVKGTTVRCADAVVYGFYGRTRAMVTSWASEAWGAIFTSC
FT LRALVVMVVTAYISTWIPKIRKMIKREKKQYEDLGDGELYVEQHGKREEAFLFKICAIF
FT ALIAGIVDYEWGAAACATMNKVKSICTVLGSVGIESHANEPDDKVEQDLKESLKFASFE
FT IEVPNVVLSQDDMTFERWFQHQIQYGNVCADPIYSGPLRMLAITENSARELAMNIRTSG
FT ETDLRVYSGVGGEKSTGLPKELSMFGHVLVCVPTRVLAESLLTSFMVLFNMDVNVAYRG
FT RIHTGNAPITIMTYGYAFNFLVHKPMELNRYDYVLLDEIHTNPVEFAPLFSFIKTTDPK
FT KKIVKLSATHAGMDCECETRHKLKVETLSEMPIESWVSMQGSGVVGDATSVGDVILVFV
FT ASFKDVDTCANGLRSKGFKVLKVDSRNFRRDADVDKQIQSLGEGKKFIVATNIIENGVT
FT FNIDVVVDFGEKISPNLSSDERCITLGRQRISRAE"
FT mat_peptide 140. .2413
FT /product="P1 proteinase"
FT mat_peptide 2414. .3775
FT /product="helper component proteinase; HC-Pro"
FT mat_peptide 3776. .4657
FT /product="P3 protein"
FT mat_peptide 4658. .4813
FT /product="6K1 protein"
FT mat_peptide 4814. .>5867
FT /product="cytoplasmic inclusion protein; CI"
FT gap 5868. .5967
FT /estimated_length=unknown
FT CDS <5968. .7473
FT /codon_start=1
FT /product="polyprotein"
FT /note="coding region disrupted by sequencing gap"
FT /db_xref="UniProtKB/TrEMBL:D2T0B9"
FT /protein_id="ACS29482.1"
FT /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPNIKYVCNGDDLL
FT INCPRGIASAISEHFKDAFADLSLNYDFDHVCDKITDVDFMSHSFMWLDAEQMYIPKLD
FT KERIVAILEWERSDEQFRTRSALNAAYIESFGYEDLMAEIEKFAHFWAEKHGLNDVLME
FT REKVRDLYVSEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQKEMEDLDADTTI
FT TVVQRETQKARIREQIETLRAQQIVRPSEAQLQPDVTPTQIVTFEPPRVTGFGALWIPR
FT QQRNYMTTAYIEKIKAYVPHSNLIESGLASEAQLTSWIESTCRDYQVSMDVFMTTVLPA
FT WIVNCIINGTSQERTNEHTWRAVVMANMEDQEVLYYPIKPIIVNAQPTLRQVMRHFGEQ
FT AVAQYMNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMPLTTKQMEVKHQIIAAN
FT VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD"
FT mat_peptide <5968. .6564
FT /product="nuclear inclusion body protein; NIb"
FT mat_peptide 6565. .7470
FT /product="coat protein; CP"
XX
SQ Sequence 7784 BP; 2341 A; 1386 C; 1913 G; 2044 T; 100 other;
fj999762 Length: 7784 19-MAR-2010 Type: N Check: 1008 ..
1 taaataaaaa tgatatagag aaaatttgaa agaaaagcgt gaacttagca
51 aacttattcg caactcagct ttactttaaa cactttattt taattttatc
101 gaactgtggt gtccgctttg aaacggatca gacgcagaaa tggggaaacc
151 taagctcact tacagacaat gcattgctaa gtgggggaaa gctgcacttg
201 aagcgcaaaa caatggatcg aaaaggagtg tccctgttgg aactcatcaa
251 attgcagcaa atgtctttgc gttctatgac gtaaaagact accatctttt
301 ttccatggga aaaagaggtg gattgactcc agcagctgag cagctgatta
351 ttgcaacgga acgaggaaca atttataagg tgcagtacga ctgccacttc
401 tgtcctgatt gcgatgcagt tgttgattcc gacgaaggat ggtattgcga
451 ggattgcggt tcgcaattta ataagcgcga cgacaatgtg cttggcaaca
501 aaaacgatgt cgcacgcgct ctcggtgggt ggactgaata tgaagacgcc
551 acctgggcgt cacttgaggc tgctaaggct gacatgcttg aagtagcacc
601 gaccgtgggt caacttgaaa aagagatcag agccatagaa aagtcagctg
651 gcaaaagact caccgctaag aagaaagaaa tgcttgaaga gctggcctac
701 aaacttgatg tggccaagat gaacgaagaa gaacaggaga cagtttccga
751 ggaggctgtt ttctcaatct ccaatgatga atttccgact cttgagaggc
801 cacaagctga agtagtcaat gaatctattg aagaacatac tgaagaaaac
851 gcgattgaag tcgcgagcaa agttggaaag tttgtagagt ctgaatctac
901 agacaagact actgatgaac cgatttgcga tgctgctgat gcgcacgtgg
951 tcatgacacc tgctgtgact ctaagtacaa caaattctgg gatggtgatt
1001 gacaaggaga agttggttga aaaaccaaga atagttgctt gggttacaaa
1051 gctaaaaact cctgctgcag ttcctgctgt accgtctaag tcggccgtct
1101 gggttgctaa gcctaggcta gcatccatac ttcccactgt tgagccagtc
1151 gctaagtcga cagtgaaagc ttgcggtaat gtgatcaata taggtgctat
1201 ggtgtgtcct atcacggtgg cagcaattga atcacatagt caccaaaatg
1251 aaaagcttac tgaggcttca gacgcacaag ttaatgatgc aactaaggag
1301 gacgaaccag tggttaaata caatataacc tttggttcat tcaactatga
1351 agtaagtgcg aaaggagaac aagttcaagc tgctgttcaa cttgacgaga
1401 tgatagaagg acctgacact gaacctatat taatttgcca aacaggaagc
1451 tcccataaat ctgaaactaa gaaggcggca aaagggcttt ttgttcagga
1501 cagattctct gtgattggga ataaggttct gtgcaagtca ttccccgctt
1551 tcaagaattt tatgaatgaa acaaggttgg gaggaattta caggacaaga
1601 aaagggaact acaaaaacgc tgcattgcgt ctactgaagg caactaaagt
1651 tcaagttttc tatgatggga taaaggatat tttcgaatgt ccatattgcc
1701 atataagcag taatgaactg gaaggtctta atggggacaa ttgtgaaaaa
1751 tgcaaggatc tattttataa acacattgat gacccaagaa aagttgagga
1801 agagtatctt atggttcctc tcgtgcccat tgatcaacat gttcatgaag
1851 agcatagcat cataagtaag gctaaatggg aagcgcacga atccatctgt
1901 gaaggagaag tggacatagt caagattttt gatggcaagc caactgcaag
1951 caaaaagaga tttaaaacca agcgagctcc aaatgttgca aatgtaccgc
2001 ttgatgactt tatgcaggaa ctagttgaga tttgccttga aagaaacacc
2051 cctattgaaa taattggggg tgtgaaattt ttcaatgtag ttaagttgag
2101 gcatactacg agagacatta gcaaatctgg cgaggatgat atgtatccga
2151 ctgagaggga gtggttctgt cacaagaata agctatgctt gtgtggcaaa
2201 attgatcgtg agaagaaagt caaaagctcc gaggtgcgtc caggttggag
2251 tggagtgatc ttacacaggg atcaagtggc ggaatgtgat tggaacaagt
2301 ttgttttcat tgatgacata tgcgtggtgc aaggtagaaa cttaatcact
2351 agcaagattg agaatgcact tgagaagaaa ggggccacta gacttaagca
2401 gatacaattc tatgcaagct ccgttgtgcc caatttcaag gacgaattcg
2451 atagggctag tcggctgaaa gctgatcacg aaccagatga atcgtccaac
2501 aatgaactcg ttggcaggct ggctaagctt gttgcagcag tcattccgaa
2551 aggccattta tactgcaaaa catgttgtta tagggttatt aagagcaagc
2601 gcgtagacat agtcaacgca ctgaataagg ccaagcagcg tggtgaacgg
2651 gatgagttta tttatgacga acttatcaaa ctttttgagc tacaagcacc
2701 accaccatat aagattgcaa cgataatcaa tgatgacgat atgttgcgaa
2751 cgttagggtt gggtggagag ctatatagtg gacgactgag tctcattatg
2801 caacatctac agggattaca tacgtcaatc tcaatgcttc accaatcact
2851 tgcaggggcc cagaatgacc aacaaattga tagacaagcg ctccacgacc
2901 aggtgcggat tctacatcag agaaatgaag agcatatgcc tttcttaaag
2951 aaagcagtgg acgaaattca gctcttaaat gcaacagatc aggtcgccaa
3001 tgctcgagaa ttgtacttgg acactagggc gactagtact ggggatttcg
3051 acattttgcg gaaatatcag agcatatatg agttctttcc caatgttatg
3101 agccgagcca ataaagcagg gatggcagtt atcaaatctg aaacatcatt
3151 gagcaaagct tttgccctta tgaacagtgc taaatcgatg aacgcagttc
3201 acacgctcat aggagaaaac gtcatagaac cgtatgatgg agcgtgctta
3251 ctgaggaatg acaagacatg tttctcaatt ggttgcaagc aaagtgttga
3301 tggtagcaag atgtatgtcc cgctctgtcc gaccaaacag cacgtaagaa
3351 ttcaccgagt tgaatctaac atgcaaattc ctttgccaac atttcatgac
3401 gccactgtct gggagttcaa cgaaggttat tgctacgcta atcaatttgc
3451 tattatggtt ggttttgtca atgaggatga aatggagttt tacaagaatc
3501 aaatgaatca agttgtgttg aatctagggg cttggccgac ttttgagcaa
3551 tatttaattg agctacgagc aatctcgctt gattatccga aagtcagggg
3601 gtgcccagct gctattcatt tagtttccca tgcaaacaag cttattcatg
3651 ttttgggaca atttggaaca ataaaccaag gttggcatgc gcttgaagta
3701 gcgactgtgg gcgaactagt agacttgtgc cataagaaag ttgaaggtga
3751 gatgttgact tacaaagttg gtggcattta tgattgggtg actaagaaga
3801 atgctttcat cgatttattt gaacaccatc cagaaaacat attcaaagtc
3851 tgcacatcac catcagtgtt gtggttattt gctcgcagct gcgagaagca
3901 tgactttatc aactacatca tggccagaga ccactcgttg gtaggtctgt
3951 ttgttaaatt ggagtatgtt ggtaagcatc ttcatatttt tcagagtgtt
4001 gacgatgttt gtgttgaata tgcagcgtct atgagggaaa tcattgaaga
4051 gcacgctgac attcatgggc tgcgggattc agtggtagat agaatggttc
4101 atgcatacca caatgaggtg agggaagcaa ataagtatga gctagttgac
4151 agaattctag aaaaaaacat tggattagtc gcaaaagaaa tttcatcgcg
4201 aaagctcatc acaatgtatc atcaagactt gttctcttgg cacgaatggc
4251 agcgtttgaa attaatgcca cattccttga atgcgcagaa actcttcgaa
4301 gaggcaaacg agcgcgcgta cgggaaacaa tcatggaatt tacgcgtgat
4351 ttggggtgcg tgcaaggaag tgttatatgc ggtcacacga ggagcttatg
4401 taagagtcaa aggaacaact gtgcgttgtg ccgacgccgt agtgtatggc
4451 ttttatggta gaacacgagc aatggtaaca agttgggcta gtgaagcctg
4501 gggggccata tttacgtcgt gtctgagagc attagttgtt atggtggtca
4551 cggcatatat ttctacttgg attcccaaaa ttaggaagat gattaaacgt
4601 gagaagaaac agtatgagga tcttggagat ggagagttat atgtggagca
4651 gcacggcaaa agagaggaag catttttgtt caagatttgc gccatctttg
4701 cacttatagc aggcatagtt gactacgaat ggggagcagc tgcatgcgca
4751 acaatgaaca aagtcaagag tatatgcact gttcttgggt ctgttgggat
4801 tgaaagccac gccaatgagc ctgatgataa agttgagcag gacttgaagg
4851 aatcccttaa atttgcatct ttcgagattg aagtaccaaa cgtagttttg
4901 tcacaggatg acatgacttt tgaaagatgg ttccaacatc aaatccaata
4951 cggcaatgtt tgtgcggatc ctatctacag tggtccgcta cgcatgctag
5001 caattacaga gaattctgcg agagagttag caatgaacat tcgcacatca
5051 ggggaaaccg acctgcgtgt ttatagtgga gttggtggag aaaaatcgac
5101 agggttacct aaggaactca gcatgtttgg gcatgtgtta gtttgtgttc
5151 ccacgagagt tttagcggaa agcttattaa catcattcat ggtacttttc
5201 aatatggatg ttaatgtggc ttatcgaggg agaatacata ctggtaatgc
5251 accaattaca ataatgactt atggttatgc cttcaacttc ttggtgcaca
5301 agccaatgga gctaaaccga tacgattatg tgttactaga tgaaattcac
5351 accaatcctg ttgagttcgc acctttgttt tcttttatca aaactacaga
5401 tccaaagaag aagattgtta agttgtcagc tacccatgct gggatggact
5451 gcgagtgtga aaccaggcac aagcttaagg tagaaacctt gagtgaaatg
5501 ccaattgaaa gctgggtttc tatgcaaggc tctggtgttg ttggtgatgc
5551 gacgtctgtt ggagatgtaa ttttggtctt tgttgcatct ttcaaggatg
5601 tcgacacatg tgctaacgga ttgcgatcta aaggctttaa agttttgaaa
5651 gttgatagca gaaacttcag acgtgatgca gatgtggata aacaaatcca
5701 gtcactaggt gaagggaaga aattcatagt tgctacaaat ataattgaaa
5751 atggggtgac gttcaacatt gatgttgttg tcgattttgg cgagaaaatc
5801 agccccaatc tctcaagcga tgagcggtgt attacactag gaaggcagag
5851 aatatcgcga gcagaaannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
5901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
5951 nnnnnnnnnn nnnnnnnggt aacaacagtg ggcagccttc aacggttgtt
6001 gataacacgt tgatcctaat gattgctatg gaatatgcga tagctaaggt
6051 ctttgtcaca cgccctaaca tcaagtacgt ctgtaatggg gacgaccttc
6101 tgattaattg tccaaggggc atcgcaagcg ccattagtga gcacttcaag
6151 gatgcatttg cagacttaag cttgaactac gactttgatc atgtttgtga
6201 caaaatcaca gacgttgatt ttatgagtca tagtttcatg tggctggatg
6251 ccgagcagat gtatatacca aagctggata aggagcgaat tgtggcaatt
6301 ttggagtggg aaaggagtga tgagcaattc agaacgagga gcgccttgaa
6351 cgctgcttat attgagagtt ttggatatga agacttaatg gctgagattg
6401 agaaattcgc tcatttttgg gctgaaaagc atggtctcaa tgacgtcttg
6451 atggagcgag agaaagttag agacttgtac gttagtgagg attttgatgc
6501 gtcagctttt gagaagtttt atccggaaac attttcgcca tttgatgttt
6551 atgttgaacc acatgcatcg acatccaaga caatcgagga gctacagaaa
6601 gaaatggagg atctggatgc agatacaaca attactgtgg ttcaaaggga
6651 gacacagaag gcgagaataa gagaacaaat tgagacactt agggcacaac
6701 aaattgtgag accttctgag gcccagctac agcctgacgt aactcctacg
6751 caaattgtta cgtttgaacc accaagagtc acaggatttg gcgctttatg
6801 gattccgcgc caacaaagga actacatgac gacagcttat attgagaaga
6851 taaaggctta tgttccacac tcaaacttga ttgaatcagg actagctagt
6901 gaagctcaat tgactagttg gatcgaaagc acgtgcagag actatcaagt
6951 tagtatggac gtcttcatga ctacagtact gccagcatgg attgttaatt
7001 gcataattaa tggaacgtct caggagcgca ctaatgagca cacatggaga
7051 gctgtggtta tggcaaatat ggaagatcag gaggtgcttt attaccctat
7101 caagcccata attgtaaacg ctcaaccaac tttgaggcaa gtgatgcgtc
7151 attttggcga gcaagccgtt gctcaataca tgaacagtct ccaagttgga
7201 aaacctttca cagtgaaagg cgccgtgact gctggttacg ctaatgttca
7251 agatgcttgg ttgggtattg actttctccg agacacgatg ccgttgacaa
7301 caaaacagat ggaagtcaag caccaaatta tcgcagcgaa cgttacaagg
7351 cggaaaattc gtgtttttgc tcttgcagca ccgggagatg gcgatgaatt
7401 agatacagaa aggcatgttg tcgacgatgt tgctagaggt cgtcacagtc
7451 tgagaggagc tcaactcgac taaacgagca cgttatcttt tattttaatt
7501 gcgtgttttt cttatttcaa ctatgtttta tgctttgtgt ttgtttgttg
7551 tggcacctga accaggtaca gctggcaggt gtttcggcat ggtgtggttg
7601 gacaattggt ttgcaccggt agtctgagaa gcgctatgta tcacgtggtt
7651 ggttaattca tattttgtat gggttaatca agaagcgtct atcgcccaaa
7701 agggcaccag aaaatggttg cgtcattcgt ggcgtaatca gtttttggag
7751 tttggctagg taacttgtcg cctttccaaa agcc