Sequence of DPV Rhynchosia yellow mosaic virus
Rhynchosia yellow mosaic virus, segment DNA-A, complete sequence, clone MI32
ACC No: FM208847
Dated: 2009-09-29 | Length: 2741 | CRC: -231243066
ID FM208847; SV 1; circular; genomic DNA; STD; VRL; 2741 BP.
XX
AC FM208847;
XX
DT 31-AUG-2009 (Rel. 102, Created)
DT 29-SEP-2009 (Rel. 102, Last updated, Version 2)
XX
DE Rhynchosia yellow mosaic virus, segment DNA-A, complete sequence, clone
DE MI32
XX
KW complete viral segment.
XX
OS Rhynchosia yellow mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2741
RA Ilyas M.;
RT ;
RL Submitted (31-AUG-2008) to the EMBL/GenBank/DDBJ databases.
RL Ilyas M., Plant Biotechnology, NIBGE, P.O Box. 577, Jhang Road Faisalabad,
RL 38000, PAKISTAN.
XX
RN [2]
RA Ilyas M., Qazi J., Mansoor S., Briddon R.W.;
RT "Molecular characterisation and infectivity of a "Legumovirus" (genus
RT Begomovirus: family Geminiviridae) infecting the leguminous weed Rhynchosia
RT minima in Pakistan";
RL Virus Res. 145(2):279-284(2009).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2741
FT /organism="Rhynchosia yellow mosaic virus"
FT /segment="A"
FT /host="Rhynchosia minima"
FT /mol_type="genomic DNA"
FT /country="Pakistan:Lahore"
FT /isolation_source="leaf of Rhynchosia minima"
FT /clone="MI32"
FT /db_xref="taxon:529680"
FT CDS 185. .514
FT /gene="av2"
FT /product="pre-coat"
FT /protein_id="CAR64497.1"
FT /translation="MVFDVCLQLSICTLSKRVTPPHSLGYLLLQELVRIVRCRDHAKAE
FT LRYGILKSDVISAEKTDLRQPFGPTCSCFTCPHHGQKKVMGQSPHESEAPLLSIVPHSG
FT RPARL"
FT CDS 306. .1079
FT /gene="av1"
FT /product="coat protein"
FT /protein_id="CAR64498.1"
FT /translation="MRKRSYDTAFSSPMSSARRRLTFDSPLALPAPALRAPTTVKRRSW
FT ANRPMNRKPRYYRLYRTPDVPRGCEGPCKVQSFEQRHDISHVGKVICISDVTRGNGITH
FT RVGKRFCIKSVYITGKIWMDENIKTKNHTNSVMFKLVRDRRPFGTAMDFGQVFNMYDNE
FT PSTATVKNDLRDRYQVLRKFHHTVTGGQYASKEQAIVNRFYRVNNHVVYNHQEAAKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDSISN"
FT CDS complement(558. .974)
FT /gene="ac5"
FT /product="AC5 protein"
FT /protein_id="CAR64499.1"
FT /translation="MVLILGCFLMVIHYVVVYTIKPINYSLFLARILTTGYSMMKLAQN
FT LITITQIVLHRSGTRLIIIHVKNLSKIHRRSKRPPVSNELKHHTVGVILGLDVFIHPNF
FT PCNVNRLDAKTFADTMSNTVTTCHIRNAYHLTNM"
FT CDS complement(1076. .1483)
FT /gene="ac3"
FT /product="replication enhancer protein"
FT /protein_id="CAR64500.1"
FT /translation="MDSRTGESITAAQQANGVYIWDVTNPLSFKIMQHQNALLGSNVKK
FT TQIRIMFNHQLKKALGMHKCFLDLTIFHQWIHSCGRICLTFKNMLLRFLNKLGVISIQT
FT VLAGCTNVLCDQLKVAYDDVHLSHEIKYNIY"
FT CDS complement(1224. .1637)
FT /gene="ac2"
FT /product="transcription activator protein"
FT /protein_id="CAR64501.1"
FT /translation="MRNSTPSKHHCSPPSIKAQHRFAKKKPRAIRRTRIDLRCGCSYYF
FT HVNCRNYGFTHRGEHHCCSAGEWRLYLGRNKSPVFQDNATPERTPGQQREENPDPHNVQ
FT PSAEESVGDAQVFPGLDDIPSMDSQLWADLLNF"
FT CDS complement(1531. .2625)
FT /gene="ac1"
FT /product="replication associated protein"
FT /protein_id="CAR64502.1"
FT /translation="MPTPGRFCINAKNYFLTYPRCPLSKEETLSQLLALQTPTNKKFIR
FT VSRELHEDGTPHLHVLLQFEGKFQTRNQRFFDLVSQTRSAHYHPNVQAAKSASDVKQYV
FT EKDGDYIDHGDFQVDGRSARGGKQSANDAYAEAINAESKSEALTILKEKAPKDYVLQFH
FT NLNCNLDRIFVPPVPIYSSPFNLATFNNVPEGLRAWAEQNVKDSAARPHRPISVVIEGD
FT SRTGKTMWARALGRHNYLCGHLDLSAKMYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNVKYGKPTHIKGGIPTIFLCNPGPRSSYKEYLDEANNASLKSWALKNAEFYTLEAPL
FT FTSVNQSATQVRQEETQSNSQNPN"
FT CDS complement(2175. .2468)
FT /gene="ac4"
FT /product="AC4 protein"
FT /protein_id="CAR64503.1"
FT /translation="MEHLISMFCCNSKGSSKPETKGSSTWYPKPGQHITIQTFRRLRAP
FT QMLNNTWRKTETTLTMEISKSMDAQLEEVSSLPTTLMPKQSMQSPNQRRSLY"
XX
SQ Sequence 2741 BP; 679 A; 586 C; 660 G; 816 T; 0 other;
fm208847 Length: 2741 29-SEP-2009 Type: N Check: 9093 ..
1 acctgaggac cccgcgaccg gaggataggg ttttgccttt ggggaccacg
51 ctgctttttg tcgttcaatg agagacgctc ctcagcgctt agataattca
101 aatttgaatt ataaacttgc gcactacgtt ttgcgcattt aaccatgtgg
151 gatccgctgt tgaacgactt tccgctctca gtgcatggtt ttcgatgtat
201 gcttgcaatt aagtatttgc acgctgtcca agagggttac ccccccgcat
251 tctttgggtt atttgctttt gcaggagtta gtgcggatag tgcgctgtag
301 ggaccatgcg aaagcggagc tacgatacgg cattctcaag tccgatgtca
351 tcagcgcgga gaagactgac cttcgacagc cctttggccc tacctgctcc
401 tgctttacgt gcccccacca cggtcaaaag aaggtcatgg gccaatcgcc
451 ccatgaatcg gaagccccgc tattatcgat tgtaccgcac tccggacgtc
501 ccgcgcggct gtgagggccc atgtaaggtt cagtcatttg aacagcgtca
551 cgacatatca catgttggta aggtgatatg catttcggat gtgacacgtg
601 gtaacggtat tactcatcgt gtcggcaaac gtttttgcat caagtctgtt
651 tacattacag ggaaaatttg gatggatgaa aacatcaaga ccaagaatca
701 caccaacagt gtgatgttta agctcgttag agacaggagg ccgtttggaa
751 cggcgatgga ttttggacaa gtttttaaca tgtatgataa tgagcctagt
801 accgctacgg tgaagaacga tttgcgtgat cgttatcaag ttttgcgcaa
851 gtttcatcat actgtaaccg gtggtcagta tgcgagcaag gaacaagcta
901 tagttaatag gttttatcgt gtaaacaacc acgtagtgta taaccatcag
951 gaagcagcca agtatgagaa ccatactgaa aacgctttgt tattgtatat
1001 ggcatgtact catgcttcaa acccagtgta tgcaacatta aagattcgga
1051 tctattttta cgattcgata tcaaattaat aaatattgta ttttatttca
1101 tgggaaaggt gtacatcatc ataagcgacc tttaattggt cgcataatac
1151 atttgtgcat cctgctaata cagtttggat gcttataact cctaatttat
1201 ttaaaaatct aagcaacata tttttaaaag ttaagcagat ccgcccacag
1251 ctgtgaatcc attgatggaa tatcgtcaag tccaggaaac acttgtgcat
1301 ccccaacgct ttcttcagct gatggttgaa cattatgcgg atctgggttt
1351 tcttcacgtt gctgcccagg agtgcgttct ggtgttgcat tatcttgaaa
1401 gacaggggat ttgttacgtc ccagatatag acgccattcg cctgctgagc
1451 agcagtgatg ctctcccctg tgcgtgaatc catagttgcg acagttgacg
1501 tggaagtagt aagagcaccc acagcgtaaa tcaattcggg ttctgcgaat
1551 tgctctgggt ttcttcttgg cgaacctgtg ttgcgctttg attgacggag
1601 gtgaacagtg gtgcttcgag ggtgtagaat tccgcattct ttaaagccca
1651 cgatttgagc gatgcgttgt ttgcctcgtc tagatactct ttataggagg
1701 atctgggccc cggattgcat aggaatatgg tggggatacc tcctttaatg
1751 tgagtgggct ttccgtattt cacgttgctt tgccagtctc tctgagcgcc
1801 catgaactct ttaaaatgct ttagatagtg cggatcaacg tcatcgatta
1851 cgttgtacca tgcgtcgttt gaatacattt tggcgctcaa atctaaatga
1901 ccacacaagt aattgtgtcg acctaaggct cttgcccaca tggttttacc
1951 cgtacgacta tcgccctcga taacgacact aataggtcta tgtggccgcg
2001 cagcggaatc cttcacgttc tgttcagccc aggcacggag accttctgga
2051 acattgttga atgtagctag gttgaacggc gaactgtaaa tagggaccgg
2101 agggacaaaa atcctatcta aattacaatt taaattatga aattgtaaga
2151 cgtaatcctt tggggctttc tccttcagta tagtgagcgc ctctgatttg
2201 gactctgcat tgattgcttc ggcataagcg tcgttggcag actgcttacc
2251 tcctctagct gagcgtccat cgacttggaa atctccatgg tcaatgtagt
2301 ctccgtcttt ctccacgtat tgtttaacat ctgaggcgct cttagccgcc
2351 tgaacgtttg gatggtaatg tgctgacctg gtttgggata ccaggtcgaa
2401 gaacctttgg tttctggttt ggaacttccc ttcgaattgc agcagaacat
2451 ggagatgagg tgttccatct tcgtgtagtt cacgagagac cctgatgaac
2501 ttcttgttag taggcgtttg taacgcaagg agctgcgaaa gtgtttcttc
2551 tttggataga ggacagcgag gataggttaa gaagtagttc ttagcgttta
2601 tgcaaaaacg acctggagtt ggcattttga aggtcgtttt gctatcgggt
2651 gataccccaa ttgctctata agtccttcta tcggtgtatt ggagtcctat
2701 atatatgatt agaattctca aggggtcctc agtataatat t