Sequence of DPV Rice stripe virus

Rice stripe virus partial CP gene for coat protein, segment RNA3, isolate AH-TC, genomic RNA

ACC No: FM958477

Dated: 2009-01-18 | Length: 1051 | CRC: -497615759

                
ID   FM958477; SV 1; linear; genomic RNA; STD; VRL; 1051 BP.
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AC   FM958477;
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DT   18-JAN-2009 (Rel. 99, Created)
DT   18-JAN-2009 (Rel. 99, Last updated, Version 1)
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DE   Rice stripe virus partial CP gene for coat protein, segment RNA3, isolate
DE   AH-TC, genomic RNA
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KW   .
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OS   Rice stripe virus
OC   Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN   [1]
RP   1-1051
RA   Jiang T.;
RT   ;
RL   Submitted (12-JAN-2009) to the EMBL/GenBank/DDBJ databases.
RL   Jiang T., College of Plant Protection, Anhui Agriculture University,
RL   Changjiang West Road 130, Hefei, Anhui, 230036, CHINA.
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RN   [2]
RA   Ding F., Jiang T.;
RT   "Cloning and sequence analysis of CP of Rice stripe virus RSV derived from
RT   Anhui Province";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1051
FT                   /organism="Rice stripe virus"
FT                   /segment="RNA3"
FT                   /host="Oryza sativa"
FT                   /isolate="AH-TC"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Anhui"
FT                   /db_xref="taxon:12331"
FT   CDS             complement(<54. .>1019)
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="CAX16802.1"
FT                   /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG
FT                   YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT                   YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT                   PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT                   TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR
FT                   LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD"
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SQ   Sequence 1051 BP; 247 A; 268 C; 223 G; 313 T; 0 other;

fm958477 Length: 1051  18-JAN-2009  Type: N  Check: 8907  ..

       1  gcgtcttcca gggagatatg agatccccca caactactga cttgttcagt
      51  ctagtcatct gcaccttctg cctcgtcctc gaagaactcc ttcaccaacc
     101  cgctgacttc agatgctgtt tttgaagtgt tctcagcaag gatcttcatc
     151  agcttgctct gttgagccaa gtacagcctt gtctgattcc cataagtgct
     201  gatcgtattg acagacatac cagccagcgc atcgaagatt gtggtcttca
     251  ctttcccatt agtgatgaat tcatctaaga ccttctttct gccatcttcc
     301  ttcttcttgt cagccaggtt ctttgacttg catgtgatga ccaggagacc
     351  agttgtgtac ttcatcatgt ctatgtcttt tgtcagacca cgctccttct
     401  tcttaccctc tggcatggtc tttttggtta tttggaagga gtgaatgatg
     451  tgcacaacaa acaaaatgtg acttagggag tgagttgtgc agtaaggggc
     501  tgtttcactc tccagtttga tatattgtgg aacatagtcc cacagtaagt
     551  tatcacatcc tgttagtccc aggtcagagg agtccacagc catcttaaca
     601  ccagaaattt gtctcacaac ttcatgtgag acatttggga atagctgagc
     651  cagccttcca agtgtgatag cattggcatt tgtccccacc gaggacacta
     701  tcccatacct cgacaccaag gtcgaagctt ctgtgcttcc agccgccact
     751  ttcactttct tagtgacatc tctcacaaag ccagtgcctc tcacatatct
     801  catggtgatg cacatagtca tatccttggc cagtgtgtca ccacctttgt
     851  ccttcaatat gccaatcaga gttgcagcat catagcctgc atactctatc
     901  tgaccagcaa aggtcacaac atcagcttta tgagcagtca ggtaggacaa
     951  cgcatctttg gagatgtcat tgattgcctt ctgcaaatca gctagagtgg
    1001  ctggcttgtt ggtgcccatt gtagcaagag gtactggagg aatggttgcg
    1051  g