Sequence of DPV Sorghum mosaic virus

Sorghum mosaic virus partial polyprotein gene, genomic RNA, isolate YN22

ACC No: FM997909

Dated: 2010-05-19 | Length: 1868 | CRC: -1149379687

                
ID   FM997909; SV 1; linear; genomic RNA; STD; VRL; 1868 BP.
XX
AC   FM997909;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sorghum mosaic virus partial polyprotein gene, genomic RNA, isolate YN22
XX
KW   .
XX
OS   Sorghum mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1868
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1868
FT                   /organism="Sorghum mosaic virus"
FT                   /host="Saccharum hybrid cv. Guitang 11"
FT                   /isolate="YN22"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Yunxian"
FT                   /db_xref="taxon:32619"
FT   CDS             <1. .1632
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /protein_id="CAX36858.1"
FT                   /translation="GNNSGQPSTVVDNTLMVIIAFNYTMLSCGIEEDMIDEICKMYANG
FT                   DDLLLAVRPDYEFLLDDFSKHFSNLGLNFDFTSRTRDKTELWFMSTRGVKVDGMYIPKL
FT                   EQERIVAILEWDRSLLPQYRLEAICAAMVEAWGYPQLLHEIRKFYAWILEMQPFATLAK
FT                   EGLAPYIAETALRNLYTGAGIKEEEINVYYTQFLKDLPEYVEDELIDVRHQAGGATVDA
FT                   GAAAAEATAQAQRDAAAKAQRDADAKKRADDEAAEKQRQDAAAKKKADDDAKAKADADA
FT                   KAKADAEAKKKADDEAAKRTQNQKDKDVDAGTSGTVAVPKLKAMSKKMRLPQAKGKNIL
FT                   HLDFLLGYKPQQQDISNTRSTRDEFDRWYDALQKEYELDDTQMTVVASGLMVWAIENGC
FT                   SPNINGVWTMMDGDEQRKFPLKPVIEYASPTFRQIMHHFSDAAEAYIEYRNSTERYMPR
FT                   YGLQRNLTDYNLARYAFDFYEITSRTPARAREAHMQMKAAAVRGSNTRMFGLDGNVGES
FT                   QENTERHTAGDVSRNMHSLLGVQQHH"
FT   mat_peptide     <1. .642
FT                   /product="NIb polymerase"
FT   mat_peptide     643. .1629
FT                   /product="Coat protein"
FT   3'UTR           1633. .1868
XX
SQ   Sequence 1868 BP; 611 A; 347 C; 458 G; 452 T; 0 other;

fm997909 Length: 1868  19-MAY-2010  Type: N  Check: 9273  ..

       1  gggaacaaca gcggacaacc atcaaccgtc gttgacaaca cactaatggt
      51  gataatagca ttcaattaca caatgttatc gtgtggaata gaagaggaca
     101  tgatcgatga aatatgcaaa atgtatgcga atggagatga tttgttgtta
     151  gcggttcggc cagattatga gtttctgcta gatgactttt caaaacactt
     201  ttcaaatctc ggactaaatt ttgatttcac atcacgaacc agagacaaga
     251  cagaattgtg gttcatgtca acaagaggtg taaaagtgga tggaatgtat
     301  attccaaagt tggagcaaga gagaatagtc gcaatccttg aatgggatag
     351  atcactgtta ccacagtaca ggttagaagc tatttgtgca gccatggtag
     401  aggcatgggg ttatccgcaa ctcttacatg agattaggaa attttatgct
     451  tggattctcg aaatgcaacc ctttgccact ttagccaaag aaggccttgc
     501  cccatacata gcggaaacag ctctgcgtaa tctttatact ggagcgggca
     551  ttaaagaaga ggaaataaat gtgtattaca cgcaatttct taaggactta
     601  cctgaatatg ttgaagatga attaattgac gtgcgtcacc aagcaggggg
     651  tgctacagtg gatgcaggag cagctgcagc tgaggcaaca gcacaagcac
     701  agcgggatgc agcagcaaaa gctcagcggg atgctgatgc aaagaaaagg
     751  gctgacgatg aagcagcaga aaagcaaaga caggatgctg ctgcgaagaa
     801  gaaagcggat gacgatgcca aggccaaagc tgatgctgat gctaaggcta
     851  aagctgatgc tgaagctaaa aagaaagcag atgatgaagc agcaaagaga
     901  acacaaaacc agaaggataa ggatgttgac gctggaacat caggcacagt
     951  ggcagtgcca aagctcaaag ctatgtctaa gaaaatgaga ttaccacaag
    1001  ctaaaggaaa gaacatttta catttagact tcctattggg ttataagcca
    1051  cagcaacaag atatttcgaa cacaagatca actagagatg aattcgacag
    1101  atggtacgat gcattacaga aagaatatga gctggatgac acacagatga
    1151  cagtcgttgc aagtgggctc atggtttggg ctatcgaaaa tggatgttcg
    1201  cctaatatta atggtgtttg gacgatgatg gatggagatg agcaaaggaa
    1251  atttcctttg aaacctgtca tagaatatgc ttctccaacg tttagacaga
    1301  taatgcacca ctttagtgat gcagctgaag cgtacattga gtatagaaac
    1351  tcaacggaac gttatatgcc aagatacgga cttcagcgaa acttaaccga
    1401  ctataaccta gcacgatacg catttgattt ttatgaaata acatcgcgta
    1451  caccagcaag agctagagag gcccacatgc agatgaaagc agcagcagtg
    1501  cgtggttcaa acacgcgcat gtttggcttg gatgggaatg tcggggaaag
    1551  tcaggagaat acagaacgtc atacagctgg cgacgtgagt cgcaacatgc
    1601  actccctcct tggagtgcaa cagcatcact gatgtgctga gatcttcatt
    1651  gcagtatttt aagtatttta tatatttact atctcagtga gggtctccct
    1701  ccttagtatt atatatgtac tttagaaatg gtagtcaatc tgcaggggaa
    1751  tgaggtgtta cctctaactc tttgattact atttcctact agcgtcgaac
    1801  tacattacgg acaccctgtt gtgtggttct accacgagtc aggagctgcg
    1851  agtattgtag caagagac