Sequence of DPV Tomato leaf curl Hainan virus
Tomato leaf curl Hainan virus complete genome, isolate HaNHK8
ACC No: FN434083
Dated: 2010-11-18 | Length: 2748 | CRC: -563059196
ID FN434083; SV 1; circular; genomic DNA; STD; VRL; 2748 BP.
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AC FN434083;
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DT 10-AUG-2009 (Rel. 101, Created)
DT 18-NOV-2010 (Rel. 106, Last updated, Version 2)
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DE Tomato leaf curl Hainan virus complete genome, isolate HaNHK8
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KW complete genome.
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OS Tomato leaf curl Hainan virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2748
RA Zhou X.P.;
RT ;
RL Submitted (05-AUG-2009) to the EMBL/GenBank/DDBJ databases.
RL Zhou X.P., Zhejiang University, Institute of Biotechnology, NO.268, Kaixuan
RL Road, Hangzhou, Zhejiang, 310029, CHINA.
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RN [2]
RA Zhang H., Hu G., Zhou X.;
RT "Molecular Characterization of Tomato Leaf Curl Hainan Virus, a New
RT Begomovirus, and Evidence for Recombination";
RL J. Phytopathol. 158(11-12):829-832(2010).
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FH Key Location/Qualifiers
FH
FT source 1. .2748
FT /organism="Tomato leaf curl Hainan virus"
FT /mol_type="genomic DNA"
FT /country="China:Hainan province"
FT /lat_lon="20 N 110 E"
FT /isolation_source="Solanum lycopersicum"
FT /collected_by="Xueping Zhou"
FT /collection_date="16-Mar-2008"
FT /db_xref="taxon:664980"
FT CDS 186. .482
FT /transl_table=1
FT /gene="AV2"
FT /product="AV2 protein"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:C7C6A0"
FT /protein_id="CBA13121.1"
FT /translation="MLAIKYLQLVENTYSPDTLGYDLIRDLISVIRAKDYVEASRRYSH
FT FHSRIQGASPAEFRQPVCQPCCCPHCPRHKQKEVMGQSAHVPKAQDVQDVQKP"
FT CDS 292. .1065
FT /transl_table=1
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="GOA:C7C6A1"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:C7C6A1"
FT /protein_id="CBA13123.1"
FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYASRAAAPTVLVTNKRRSW
FT VNRPMYRKPRMYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTH
FT RVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNE
FT PSTATVKNDNRDRFQVLRRFQATVTDGQYASKEQALVRKFMKVNNHVTYNHQEAAKYDN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT CDS complement(1062. .1466)
FT /transl_table=1
FT /gene="AC3"
FT /product="AC3 protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:C7C6A2"
FT /protein_id="CBA13126.1"
FT /translation="MDSRTGEAITAAQAESGVYIWTVKNPLYFKIISHDERPFLMNHDI
FT ITIQVQFNYNLRKALGIHQCFLIFQIWTHLRPQTWRFLRVFRVQCMKYLDNLGVISINN
FT VIRACDHVLWDVLEKTEYVTHSNIIKFNLY"
FT CDS complement(1207. .1611)
FT /transl_table=1
FT /gene="AC2"
FT /product="AC2 protein"
FT /db_xref="GOA:C7C6A3"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:C7C6A3"
FT /protein_id="CBA13128.1"
FT /translation="MRSSSPSKAHSTQVPIKVQHRNAKKATRRRRVDLPCGCSYFIALG
FT CHNHGFSHRGSYHCSSSREWRIYLDGQKSPIFQDNQPRRETISDEPRHHHNTSPIQLQP
FT EESVGNTPMFSNLPDLDSFTSSDLAFLKSI"
FT CDS complement(1514. .2599)
FT /transl_table=1
FT /gene="AC1"
FT /product="AC1 protein"
FT /db_xref="GOA:C7C6A4"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:C7C6A4"
FT /protein_id="CBA13130.1"
FT /translation="MPPPKKFLINAKNYFLTYPHCSLSKEEALSQFLALTTPTNKLFIR
FT ICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQSAKSSTDVKAYM
FT DKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKATALNILREKAPKDFVLQFH
FT NLNSNLDRIFTPPMEVYVSPFSSSSFDRVPEELEEWAAENVVSAAARPLRPISIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKHWAIKNAIFVTLQSAL
FT YSGSYQGATPQRQESNEETES"
FT CDS complement(2149. .2442)
FT /transl_table=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:C7C6A5"
FT /protein_id="CBA13131.1"
FT /translation="MGLLTCMSSSSSKENSNAKTTDSSISYPQPGQHISIRTFRALKAQ
FT QTSKPTWTKTETCLIMEFSRSMEDRLEEVASLQTTHMPRQSIQGPKLRPSIY"
XX
SQ Sequence 2748 BP; 731 A; 550 C; 616 G; 851 T; 0 other;
fn434083 Length: 2748 18-NOV-2010 Type: N Check: 5584 ..
1 accggatggc cgcgattttt tttaaaatgg tccccaccac taacaaatgt
51 gctccactta gaacgctccc tcaaatccta tttaattcaa atccattata
101 tatacttggt ccccaagtac tcacgtcaaa catgtgggat cctttactaa
151 acgagtttcc cgaaaccgta cacggtttta ggtgtatgtt agccattaaa
201 tatttgcaat tagtagaaaa tacatactct cctgatacat tagggtacga
251 tttgattcgt gatttaattt cagttattcg tgctaaggac tatgtcgaag
301 cgtcccgcag atatagtcat ttccactccc gcatccaagg tgcgtcgccg
351 gctgaatttc gacagcccgt atgccagccg tgctgctgcc cccactgtcc
401 tcgtcacaaa caaaaggagg tcatgggtca atcggcccat gtaccgaaag
451 cccaggatgt acaggatgta caaaagccct gatgttcctc gtggttgtga
501 aggtccatgt aaggttcagt cgtatgaaca gcgtcatgat gtagcgcacg
551 taggtaaggt catttgtgtg tcggatgtta ctcgtggtaa cgggttgact
601 catcgtgtgg gaaagaggtt ttgtgttaag tctgtttatg ttttgggcaa
651 gatatggatg gatgagaaca ttaagaccaa gaatcacact aatactgtga
701 tgtttttttt agttcgtgat aggagaccat ttgggactcc acaggatttt
751 ggtcaggttt ttaatatgta tgataatgag cctagtactg ctactgtgaa
801 gaacgataac agagatcgct ttcaagttct acgccgtttt caggcgactg
851 ttactgatgg tcagtatgca agtaaggagc aggcgttggt taggaaattt
901 atgaaggtta acaaccatgt gacctataac catcaagaag ccgcgaagta
951 tgacaatcac acagagaatg ctcttttgtt gtatatggca tgtactcatg
1001 ctagtaatcc tgtgtatgct actttgaaaa tcagaatcta tttctatgat
1051 tctgttcaga attaataaag attgaatttt attatatttg aatgtgttac
1101 atattctgtt ttttccaata catcccataa tacatgatca catgctctaa
1151 ttacattgtt aatactaatt acacccaaat tatctaaata tttcatacat
1201 tgaaccctaa atactcttaa gaaacgccag gtctgaggac gtaaatgagt
1251 ccagatctgg aagattagaa aacattggtg tattcccaac gctttcctca
1301 ggttgtaatt gaattggact tgtattgtga tgatgtcgtg gttcatcaga
1351 aatggtctct cgtcgtggct gattatcttg aaatataggg gatttttgac
1401 cgtccagata tatacgccac tctctgcttg agctgcagtg atagcttccc
1451 ctgtgcgaga atccatgatt gtgacagcct agtgcaatga agtatgaaca
1501 gccacaaggg agatcaactc tccgtctcct cgttgctttc ttggcgttgc
1551 ggtgttgcac cttgatagga acctgagtag agtgcgcttt ggagggtgac
1601 gaagatcgca ttttttattg cccagtgttt gagtgcgctg tttttctctt
1651 cgtccaagaa ttctttatag cttgaattgg ggccgggatt gcagaggaag
1701 atagtgggaa ttcccccttt aatttgaacg ggttttccgt actttgtgtt
1751 gctttgccag tccctttggg cccccatgaa ttctttaaaa tgctttaggt
1801 agtgcggatc aacgtcatca atgacgttgt accaggcatc attactgtac
1851 acctttggac tcaaatcaag atgaccacac agataattgt gtggacccaa
1901 tgatcgagcc cacatcgtct tccccgtccg actatcgccc tctatgacta
1951 tacttattgg tcgtaatggc cgcgcagcgg cactgacaac gttctctgca
2001 gcccactctt cgagttcttc tggaactcga tcaaacgaag aggaagaaaa
2051 aggagaaacg taaacctcca ttggaggagt aaaaatccta tctaaattac
2101 tatttaaatt atgaaactgt aaaacaaaat ctttgggagc tttctccctt
2151 aatatattga gggccgtagc tttggaccct gaattgattg cctcggcata
2201 tgcgtcgttt gcagactggc aacctcctct agccgatctt ccatcgatct
2251 ggaaaactcc atgatcaagc acgtctccgt ctttgtccat gtaggctttg
2301 acgtctgttg agcttttagc gctctgaatg ttcggatgga aatgtgctga
2351 cctggttggg gatacgagat cgaagaatct gttgttttgg catttgaatt
2401 ttccttcgaa ctggatgagg acatgcaggt gaggagaccc atcttcgtgt
2451 aattccctgc agattcgaat gaataattta ttggttggtg tcgttagggc
2501 taaaaattgg gaaagtgctt cttctttgct tagtgagcaa tgtgggtatg
2551 tgaggaaata gtttttggca tttattagaa attttttggg cggaggcatg
2601 ttgacttggt caatcgggtc ctctcaaact tagctatgca atcggggaat
2651 gggtccttat ttatatgtga ggacctaaat ggcacaattg taaattacca
2701 aaagaaattc aaaattcaaa ttggtaaagc ggccatccgt ataatatt