Sequence of DPV Tomato leaf curl New Delhi virus
Tomato leaf curl New Delhi virus [Pakistan:Solanum:2009] complete segment DNA-A, clone MS1
ACC No: FN435309
Dated: 2011-08-07 | Length: 2736 | CRC: -137060991
ID FN435309; SV 1; circular; genomic DNA; STD; VRL; 2736 BP.
XX
AC FN435309;
XX
DT 07-AUG-2011 (Rel. 109, Created)
DT 07-AUG-2011 (Rel. 109, Last updated, Version 1)
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DE Tomato leaf curl New Delhi virus [Pakistan:Solanum:2009] complete segment
DE DNA-A, clone MS1
XX
KW .
XX
OS Tomato leaf curl New Delhi virus [Pakistan:Solanum:2009]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2736
RA Shahid M.S.;
RT ;
RL Submitted (07-AUG-2009) to the INSDC.
RL Shahid M.S., Agriculture Biotechnology Division, National Institute for
RL Biotechnology and Genetic Engineering, NIBGE, Jhang Road, Faislabad, 38000,
RL PAKISTAN.
XX
RN [2]
RA Shahid M.S., Nahid N., Briddon R.W., Mansoor S.;
RT "Synergism with betasatellite and prevalent strains influence symptoms
RT induced by Tomato leaf curl New Dehli virus, a bipartite begomovirus";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2736
FT /organism="Tomato leaf curl New Delhi virus
FT [Pakistan:Solanum:2009]"
FT /segment="DNA-A"
FT /host="Solanum lycopersicum"
FT /mol_type="genomic DNA"
FT /country="Pakistan:Faisalabad"
FT /isolation_source="host leaf"
FT /collected_by="Muhammad Shafiq Shahid"
FT /clone="MS1"
FT /db_xref="taxon:665442"
FT CDS 41. .397
FT /gene="v3"
FT /product="V3 protein"
FT /function="movement"
FT /protein_id="CBA13456.1"
FT /translation="MKFTLHGLYNAGGPINRLAHQVWIHKHVGSIIARISRKRSWSEVH
FT ASCKISPRDRKELFPRHGRLRSCPRSHSCSPGKELWRSDQQISSFQRPHRKYADVSTSA
FT AHTRAVLLPPLSAS"
FT CDS 120. .458
FT /gene="v2"
FT /product="movement protein"
FT /protein_id="CBA13457.1"
FT /translation="MWDPLLHEFPESVHGLKCMLAVKYLQEIEKNYSPDTVGYDLVRDL
FT ILVLRAKNYGEATSRYHHFNARIESTPTSQLRQPIRVPCCCPHCPRHKSKGLDQQADEQ
FT KTQNVQNV"
FT CDS 280. .1050
FT /gene="cp"
FT /product="coat protein"
FT /protein_id="CBA13458.1"
FT /translation="MAKRPADIIISTPASKVRRRLNFGSPYACRVAAPIVRVIKAKAWT
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVTFFLVRDRRPTGSPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT CDS complement(310. .795)
FT /gene="c5"
FT /product="C5 protein"
FT /protein_id="CBA13459.1"
FT /translation="MHVLHRCCARFIVKHIKHFPKILGRSCRTTVTNQKKRDTVSMVFC
FT LDVFIHPYLSQHVDGFHTESLPYAMCESSSSGNITNTHDFANMRDIVPRLKGLHFTRAF
FT TAPWHVGTSIHSVHSGFSVHRPVGPGLCFYDADNGGSNTARVWAAEVETSAYFRCGR"
FT CDS complement(1047. .1457)
FT /gene="c3"
FT /product="replication enhancer protein"
FT /protein_id="CBA13460.1"
FT /translation="MVTDSRTGEYITADRAESGVYTWEIRNPLYFKILQHDSRPFLTQH
FT DIIKIQIQFNNNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI
FT YNVIRAVYHVLDNVMEQTIDVWTSYDIKLDIY"
FT CDS complement(1177. .1593)
FT /gene="trAp"
FT /product="transcriptional activator protein"
FT /protein_id="CBA13461.1"
FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKSIRRRRVDLPCGCSYYISINC
FT HGHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFATRQQALPNTARHNQDSNTIQQQPA
FT ESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP"
FT CDS complement(1499. .2581)
FT /gene="c1"
FT /product="replication associated protein"
FT /function="replication"
FT /protein_id="CBA13462.1"
FT /translation="MASPRRFRVNAKNYFLTYPKCSLTKEEALSQLQTLETPTKKKFIK
FT ICKELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKNYI
FT AKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDDALRVLKELAPKDYVLQFH
FT NLNTNLDRIFQPPSEVYVSPFSISSFDRVPPELVDWVSSNVVCAAARPFRPISIVIEGD
FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL
FT YSGRENIAPAEEEEHSQEAS"
FT CDS complement(2248. .2424)
FT /gene="c4"
FT /product="C4 protein"
FT /protein_id="CBA13463.1"
FT /translation="MGLRISMFSSNSKGNSSAKIIDSSTWFPQVGQHISIRTFRELNQR
FT RTSKTTSPKMETF"
XX
SQ Sequence 2736 BP; 747 A; 587 C; 611 G; 791 T; 0 other;
fn435309 Length: 2736 07-AUG-2011 Type: N Check: 2070 ..
1 accgaatggc cgcgcaaatt tttaggtggg ccctcaacca atgaaattca
51 cgctacatgg cttatataat gcggggggac caataaatag acttgctcac
101 caagtttgga tccacaaaca tgtgggatcc attattgcac gaatttccag
151 aaagcgttca tggtctgaag tgcatgctag ctgtaaaata tctccaagag
201 atagaaaaga actattcccc agacacggtc ggctacgatc ttgtccgaga
251 tctcattctt gttctccggg caaagaacta tggcgaagcg accagcagat
301 atcatcattt caacgcccgc atcgaaagta cgccgacgtc tcaacttcgg
351 cagcccatac gcgtgccgtg ttgctgcccc cattgtccgc gtcataaaag
401 caaaggcctg gaccaacagg ccgatgaaca gaaaacccag aatgtacaga
451 atgtatagaa gtcccgacgt gccaaggggc tgtgaaggcc cttgtaaagt
501 gcagtccttt gagtctaggc acgatgtctc tcatattggc aaagtcatgt
551 gtgttagtga tgttacccga ggaactggac tcacacatcg cgtagggaag
601 cgattctgtg tgaaatccgt ctacgtgctg ggaaagatat ggatggatga
651 aaacatcaag acaaaaaacc atactaacag tgtcacgttt tttctggttc
701 gtgaccgtcg tcctacagga tctccccaag attttgggga agtgtttaat
751 atgtttgaca atgaaccgag cacagcaacg gtgaagaaca tgcatcgtga
801 tcgttatcaa gtcttacgga agtggcatgc tactgtgacg ggaggaacat
851 atgcatctaa ggagcaagca ttagttagga agtttgttag ggttaataat
901 tatgttgttt ataatcaaca agaggccggc aagtatgaga atcatactga
951 aaacgcatta atgttgtata tggcctgtac tcacgcatca aatcctgtat
1001 atgctacttt gaaaatccgg atctatttct atgattcggt cacaaattaa
1051 taaatatcga gctttatatc atatgaagtc catacatcaa tcgtttgctc
1101 cattacatta tccaatacat gataaactgc tcttattaca ttataaatgc
1151 ctattacacc taacatatcc aggtacttaa ggacctgggt tttgaagact
1201 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga ttttgaaagt
1251 tagaaaacac ttgtgaagtc ccagggcttt ccgcaggttg ttgttgaatt
1301 gtatttgaat cttgattatg tcgtgctgtg ttaggaaggg cctgctgtcg
1351 tgttgcaaaa ttttgaaata caggggattt cgaatttccc aggtatatac
1401 gccactctct gctcgatccg cagtgatgta ttcccctgtg cgtgaatccg
1451 tgaccatggc agttgattga tatgtaatac gaacaaccac acggcagatc
1501 aactcgcctc ctgcgaatgc tcttcttctt ctgcgggagc gatgttttcg
1551 cgaccggaat agagtggttc ttcgagtgtg atgaagactg cattcttgat
1601 tgcccactgc ttcaatgctg catttttttc ttcgtccaga tattccttat
1651 agctgctatt tggaccttta ttgcacagga agatagtggg aattccacct
1701 ttaatcatga ctggctttcc gtacttcgtg ttgctttgcc agtcacgctg
1751 ggcccccatg aattctttaa aatgctttag atagtgggga tcaacgtcat
1801 caatgacgtt gtaccaggct tcattgctat agacctttgg gctcagatca
1851 agatgtccac acaagtaatt gtggggtcct aaacatcgag cccacattgt
1901 tttgcccgtt ctactatccc cctcaatgac tatgcttatg ggcctaaaag
1951 gccgcgcagc ggcacacacc acattggacg agacccaatc gacgagttct
2001 ggcggaactc tgtcgaagga tgaaattgaa aatggagaaa cataaacctc
2051 ggaaggaggt tgaaaaatac gatctaaatt ggtatttaaa ttgtgaaact
2101 gcagaacgta atcttttggg gctaattcct ttaatactct caaagcatcg
2151 tctttatttc ccgtgttaat cgcctgggca tatgcatcgt tcgccgtttg
2201 ttgaccacca cgggcagatc gtccatcgat ctggaaaaca ccccattcta
2251 gaacgtctcc atctttggcg atgtagtttt tgacgtccga cgctgattta
2301 gctccctgaa tgttcggatg gaaatgtgct gaccgacttg gggaaaccaa
2351 gtcgaagaat ctattatttt tgcactggaa tttcccttcg aattggatga
2401 gaacatggat atgcggagac ccatcttcgt gaagctcttt acagatcttg
2451 atgaatttct tcttcgtcgg ggtttctagg gtttgcaatt gggaaagtgc
2501 ctcttcttta gttagagagc actttggata tgtgaggaaa tagtttttgg
2551 catttactct aaaacgacgt ggcgaagcca taaaacttgt cgttttgatt
2601 cggcgtctct caacttatct atgtgattgg tgtctggagt cctatatata
2651 ggtaagacac catatggcat tattgtaatt ttgaaaagaa aattacttta
2701 attcaaattc cctaaagcgg ccattcgtat aatatt