Sequence of DPV Tomato leaf curl New Delhi virus
Tomato leaf curl New Delhi virus [Pakistan:Solanum:2009] complete segment DNA-A, clone MS4
ACC No: FN435310
Dated: 2011-08-07 | Length: 2739 | CRC: 2139472509
ID FN435310; SV 1; circular; genomic DNA; STD; VRL; 2739 BP.
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AC FN435310;
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DT 07-AUG-2011 (Rel. 109, Created)
DT 07-AUG-2011 (Rel. 109, Last updated, Version 1)
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DE Tomato leaf curl New Delhi virus [Pakistan:Solanum:2009] complete segment
DE DNA-A, clone MS4
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KW .
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OS Tomato leaf curl New Delhi virus [Pakistan:Solanum:2009]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2739
RA Shahid M.S.;
RT ;
RL Submitted (07-AUG-2009) to the INSDC.
RL Shahid M.S., Agriculture Biotechnology Division, National Institute for
RL Biotechnology and Genetic Engineering, NIBGE, Jhang Road, Faislabad, 38000,
RL PAKISTAN.
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RN [2]
RA Shahid M.S., Nahid N., Briddon R.W., Mansoor S.;
RT "Synergism with betasatellite and prevalent strains influence symptoms
RT induced by Tomato leaf curl New Dehli virus, a bipartite begomovirus";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .2739
FT /organism="Tomato leaf curl New Delhi virus
FT [Pakistan:Solanum:2009]"
FT /segment="DNA-A"
FT /host="Solanum lycopersicum"
FT /mol_type="genomic DNA"
FT /country="Pakistan:Faisalabad"
FT /isolation_source="host leaf"
FT /collected_by="Muhammad Shafiq Shahid"
FT /clone="MS4"
FT /db_xref="taxon:665442"
FT CDS 48. .434
FT /gene="v3"
FT /product="V3 protein"
FT /function="movement"
FT /protein_id="CBA13464.1"
FT /translation="MKFTLHGLFSAWGSINRLAHQVWIHKHVGSIIARISRKRSWSKVH
FT ASCKISPRDRKELFTRHSRLRSYSRSHSCSPSKELWRSDQQISSFQRPHRRYADVSTST
FT APMELVQLSPLHASPKQRPGPTGR"
FT CDS 127. .465
FT /gene="v2"
FT /product="movement protein"
FT /function="movement"
FT /protein_id="CBA13465.1"
FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLIRDL
FT ILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCTRHQSKGLDQQADEQ
FT KTQNVQNV"
FT CDS 287. .1057
FT /gene="v1"
FT /product="V1 protein"
FT /function="movement"
FT /protein_id="CBA13466.1"
FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMLFLVRDRRPTGSPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSATN"
FT CDS complement(317. .679)
FT /gene="c5"
FT /product="C5 protein"
FT /protein_id="CBA13467.1"
FT /translation="MVFCLDVFIHPYLSQHIDRFHTESLPYAMCESSSSGNITNTHDFA
FT NMRDIVPRFKGLHFTRAFTAPWHVGTSIHSVHSGFSVHRPVGPGLCFGDACNGDNCTSS
FT IGAVEVETSAYLRCGR"
FT CDS complement(1054. .1464)
FT /gene="c3"
FT /product="replication enhancer protein"
FT /protein_id="CBA13468.1"
FT /translation="MITDSRTGEYITADRAESGVYTWEIRNPLYFKILKHDSRPFLTQH
FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI
FT YNVIRAVYHVLDNVLEQTIDVWTSYDIKLDIY"
FT CDS complement(1184. .1603)
FT /gene="trAp"
FT /product="transcriptional activator protein"
FT /protein_id="CBA13469.1"
FT /translation="MQSSSHSKNHSIPVAKTSLSQKKKKSIRRRRVDLPCGCSYYISIN
FT CHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFETRQQALPNTARHNQDSNTVQPQP
FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP"
FT CDS complement(1506. .2591)
FT /gene="c1"
FT /product="replication associated protein"
FT /function="replication"
FT /protein_id="CBA13470.1"
FT /translation="MASPRRFRVNAKNYFLTYPKCSLTKEEALSQLQTLETPTKKKFIK
FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKNYI
FT AKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDDALRVLKELAPKDYVLQFH
FT NLNTNLDRIFQPPSEVYVSPFSISSFDRVPADLVDWVSSNVVCAAARPFRPISIVIEGD
FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDC
FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL
FT YSGRENIALPEEEEEHSQEAS"
FT CDS complement(2258. .2434)
FT /gene="c4"
FT /product="C4 protein"
FT /protein_id="CBA13471.1"
FT /translation="MGLRISMFSSNSKGNSSAKITDSSTWFPQVGQHISIRTFRELNQR
FT RTSKTTSPKMETF"
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SQ Sequence 2739 BP; 750 A; 590 C; 611 G; 788 T; 0 other;
fn435310 Length: 2739 07-AUG-2011 Type: N Check: 7716 ..
1 taatattacc gaatggccgc gcaaattttt aggtgggccc tcaaccaatg
51 aaattcacgc tacatggcct atttagtgcg tggggatcaa taaatagact
101 tgctcaccaa gtttggatcc acaaacatgt gggatccatt attgcacgaa
151 tttcccgaaa gcgttcatgg tctaaggtgc atgctagctg taaaatatct
201 ccaagagata gaaaagaact attcaccaga cacagtcggc tacgatctta
251 ttcgagatct cattcttgtt ctccgagcaa agaactatgg cgaagcgacc
301 agcagatatc atcatttcaa cgcccgcatc gaaggtacgc cgacgtctca
351 acttcgacag cccctatgga gctcgtgcag ttgtccccat tgcacgcgtc
401 accaaagcaa aggcctggac caacaggccg atgaacagaa aacccagaat
451 gtacagaatg tatagaagtc ccgacgtgcc aaggggctgt gaaggccctt
501 gtaaagtgca gtcctttgaa tctaggcacg atgtctctca tattggcaaa
551 gtcatgtgtg ttagtgatgt tacccgagga actggactca cacatcgcgt
601 agggaagcga ttctgtgtga aatctgtcta tgtgctggga aagatatgga
651 tggatgaaaa catcaagaca aaaaaccata ctaacagtgt catgttattt
701 ctggttcgtg accgtcgtcc tacaggatct ccccaggatt tcggggaagt
751 gtttaatatg tttgacaatg aaccgagcac agcaacggtg aagaacatgc
801 atcgtgatcg ttatcaagtc ttacggaagt ggcatgcgac tgtgacggga
851 ggaacatatg catctaagga gcaagcatta gttaggaagt ttgttagggt
901 taataattat gttgtttata atcaacaaga ggccggcaag tatgagaatc
951 atactgaaaa cgcattaatg ttgtatatgg cctgtactca cgcatcaaat
1001 cctgtatatg ctactttgaa aatccggatc tacttttatg attcggccac
1051 aaattaataa atatccagtt ttatatcata cgaagtccat acatcaattg
1101 tttgctccaa tacattatcc aatacatgat aaactgctct tattacatta
1151 taaattccta tgacacctaa catatccagg tacttaagga cctgggtttt
1201 gaagactctc aagaaaatcc caatctgagg gcgtaagccc gtccagattt
1251 tgaaagttag aaaacacttg tgaagtccca gggctttccg caggttgtgg
1301 ttgaactgta tttgaatctt gattatgtcg tgctgtgtta ggaagggcct
1351 gctgtcgtgt ttcaaaattt tgaaatacag gggatttcga atttcccagg
1401 tatatacgcc actctctgct cgatccgcag tgatgtattc ccctgtgcgt
1451 gaatccgtga tcatggcagt tgatcgatat gtaatacgaa caaccacacg
1501 gtagatcaac tcgcctcctg cgaatgctct tcttcttctt ctgggagagc
1551 gatgttttcg cgaccggaat agagtggttc ttcgagtgtg atgaagactg
1601 cattcttgat tgcccactgc ttcagtgctg catttttttc ttcatccaga
1651 tattccttat agctgctgtt tggaccttta ttgcacagga agatagtggg
1701 aattccacct ttaatcatga ccggctttcc gtacttcgtg ttgctttggc
1751 agtcacgctg ggcccccatg aattctttaa agtgctttag atagtgggga
1801 tcaacgtcat caatgacgtt gtaccaggca tcattgctat agacctttgg
1851 gctcagatca agatgtccac acaagtaatt gtgtggtcct aagcaccgag
1901 cccacatcgt tttgcccgtc ctactatccc cctctatgac tatgcttatg
1951 ggcctaaaag gccgcgcagc ggcacacaca acattagacg agacccaatc
2001 gacgaggtct gccggaactc tgtcgaagga tgaaattgaa aatggagaaa
2051 cataaacctc ggaaggaggt tgaaaaatac gatctaaatt ggtatttaaa
2101 ttgtgaaact gcagaacgta atcttttggg gctaattcct ttaatactct
2151 caaagcatcg tctttatttc ccgtgttaat cgcctgggca tatgcatcgt
2201 tcgccgtttg ttgaccacca cgggcagatc gtccatcgat ctggaaaaca
2251 ccccattcta gaacgtctcc atctttggcg atgtagtttt tgacgtccga
2301 cgctgattta gctccctgaa tgttcggatg gaaatgtgct gaccgacttg
2351 gggaaaccaa gtcgaagaat ctgttatttt tgcactggaa tttcccttcg
2401 aattggatga gaacatggat atgcggagac ccatcttcgt gaagctctct
2451 acagatcttg atgaatttct tcttcgtcgg ggtttctagg gtttgcaatt
2501 gggagagtgc ctcttcttta gttagagagc actttggata tgtgaggaaa
2551 tagtttttgg catttactct aaaacgacgt ggcgaagcca taaaacttgt
2601 cgttttgatt cggcgtccct caacttatct atatgattgg tgtctggagt
2651 cctatatata ggtaagacac catatggcat tattgtatat ttgaaaagaa
2701 aattacttta attcaaattc cctaaagcgg ccattcgta