Sequence of DPV Sida micrantha mosaic virus
Sida micrantha mosaic virus segment DNA A, complete sequence, isolate Brazil:Mato grosso do sul:1:2007
ACC No: FN436003
Dated: 2010-06-09 | Length: 2677 | CRC: -1246784337
ID FN436003; SV 1; circular; genomic DNA; STD; VRL; 2677 BP.
XX
AC FN436003;
XX
DT 09-JUN-2010 (Rel. 105, Created)
DT 09-JUN-2010 (Rel. 105, Last updated, Version 1)
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DE Sida micrantha mosaic virus segment DNA A, complete sequence, isolate
DE Brazil:Mato grosso do sul:1:2007
XX
KW complete genome.
XX
OS Sida micrantha mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2677
RA Paprotka T.;
RT ;
RL Submitted (12-AUG-2009) to the EMBL/GenBank/DDBJ databases.
RL Paprotka T., Molecular Biology and Virology of Plants, University of
RL Stuttgart, Pfaffenwaldring 57, 70550 Stuttgart, GERMANY.
XX
RN [2]
RA Paprotka T., Metzler V., Jeske H.;
RT "The first DNA 1-like . . satellites in association with New World
RT begomoviruses in natural infections";
RL Virology 0:0-0(2010).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2677
FT /organism="Sida micrantha mosaic virus"
FT /segment="DNA A"
FT /host="Sida rhombifolia"
FT /isolate="Brazil:Mato grosso do sul:1:2007"
FT /mol_type="genomic DNA"
FT /country="Brazil:Mato Grosso do Sul"
FT /lat_lon="20.24 S 56.38 W"
FT /collection_date="30-Nov-2007"
FT /db_xref="taxon:228897"
FT CDS 242. .1024
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="CBA18093.1"
FT /translation="MYDVSNYFEMPKRDPSWRQMAGTSKVSRTSNFSPRGGGGPKYNKA
FT SEWVHRPMYRKPRIYRMIRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNG
FT ITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMF
FT DNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGK
FT YENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN"
FT CDS complement(1021. .1419)
FT /gene="AC3"
FT /product="replication enhancer"
FT /protein_id="CBA18094.1"
FT /translation="MDSRTGEFITAPQAENGVYIWEITNPLYFKMYHVEDPPYTRTRVY
FT HVQIRFNHNLRKALGLHKAYLNFQVWTTSLTASGTTYLIRLRRLVMMYLDQLGVISLNN
FT VIRAVRFATDKAYVNYVLEDHDIKFKFY"
FT CDS complement(1166. .1585)
FT /gene="AC2"
FT /product="transcriptional regulator"
FT /protein_id="CBA18095.1"
FT /translation="MQHSVLGQSTMQNSSSSTPPSIKPRHRIAKKRAIRRRRVDLECGC
FT SIFTHLNCTGHGFTHRGIHHCTSGREWRLYLGDNKSPLFQDVPRRGSTVHEDQSVPRTD
FT KVQPQPQESIGSPQGLPELPSLDDFSDSFWNNLFD"
FT CDS complement(1476. .2552)
FT /gene="AC1"
FT /product="replication associated protein"
FT /protein_id="CBA18096.1"
FT /translation="MPPPKRFKISAKNYFLTYPQCSLTKEETLSQLQSLTTPVNKKFVK
FT ICRELHEDGQPHLHVLIQFEGKFQCTNQRFFDLVSPSRSVHFHPNIQGAKSASDVKSYI
FT NKDGDTIEWGDFQVDGRSARGGCQTANDAAAEALNAPSKEAALQIVREKLPEKFLFQFH
FT NLNSNLDKIFAKAPEPWAPPYQLSSFTNVPDEMQEWADDYFGRGSAARPLRPISLIVEG
FT GSRTGKTMWARALGPHNYLSGHLDFNSKVFSDEVEYNVIDDVAPHYLKLKHWKELIGAQ
FT QKWQTNCKYGKPRLIEGGVPSIVLCNPGEGASYKDFLDKEENAALRAWTIHNAKFIFLD
FT APLYQTETQDCQEESHQA"
FT CDS complement(2138. .2395)
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="CBA18097.1"
FT /translation="MGSHISTCLYSSKGNSSARIRDSSIWCPRPGQYISIRTFRELNQR
FT PTSSPTSTRTGTQSNGEISRSTEEVLEAVAKQLTTLPQKP"
XX
SQ Sequence 2677 BP; 659 A; 617 C; 654 G; 747 T; 0 other;
fn436003 Length: 2677 09-JUN-2010 Type: N Check: 9549 ..
1 accggatggc cgcgcgattt ttcccccccc cacgtggcgc tctggtggtc
51 gtgcgatctc tctccccctc tctcgcgcga cgtggagctc tggtgtccgc
101 gcgtttcccc ccgcgcgcta tgcctttaat tcaaattaaa ggaaataact
151 ttcatcagga ccaatgaaat tgcgtctttt aagcctagat atttgcggaa
201 gacttgggcc cgaagttgtt gggcgactat ataattaagt catgtatgac
251 gtcagtaatt atttcgaaat gcccaagcgg gatccctcat ggcgccagat
301 ggcgggaacc tcaaaggtta gccgcactag caacttttcc cctcgtggag
351 gtggaggccc aaagtacaac aaggcctcgg aatgggttca caggcccatg
401 tataggaagc ccaggatata caggatgata aggactcctg atgttccaag
451 aggctgtgaa ggaccctgca aggttcagtc ctacgagcag cgtcacgaca
501 tctcacatgt cgggaaggtc atgtgcatat ctgatgtcac acgtggcaac
551 ggtataaccc accgtgtcgg taagcgtttc tgcgttaagt ctgtgtacat
601 tttagggaag atatggatgg acgagaacat caagctcaag aaccacacga
651 acagtgtcat gttctggttg gtcagagacc gtagaccgta tggtactcct
701 atggattttg gccaggtgtt taacatgttt gacaacgagc ccagcactgc
751 tacggtgaag aacgatctcc gtgatcgtta tcaagttatg cacaagttct
801 acgctaaggt cactggtgga cagtatgcca gcaacgaaca ggctctggtc
851 aagaggttct ggaaggtcaa caatcatgtg gtgtacaacc accaggaagc
901 tggcaagtat gagaatcaca cggagaatgc tttgttactg tatatggcat
951 gtacccatgc ctctaaccct gtgtatgcaa cgcttaagat tcggatctac
1001 ttctacgatt cgataaccaa ttaataaaat ttgaatttta tatcatgatc
1051 ttcaagtaca tagtttacat aggctttgtc agtggcaaag cgaacagctc
1101 taattacatt attaagggaa attacaccta attgatctaa gtacatcatc
1151 acaaggcgtc taagcctaat caaataagtt gttccagaag ctgtcagaga
1201 agtcgtccag acttggaagt tcaggtaggc cttgtggaga cccaatgctt
1251 tcctgaggtt gtggttgaac cttatctgta cgtggtacac tctggtcctc
1301 gtgtacggtg gatcctctac gtggtacatc ttgaaataga ggggatttgt
1351 tatctcccag atataaacgc cattctctgc ctgaggtgca gtgatgaatt
1401 ccccggtgcg tgaatccatg cccggtgcag ttgaggtgtg tgaatatgga
1451 gcagccgcac tctaggtcca ctcgtctacg cctgatggct ctcttcttgg
1501 caatcctgtg tctcggtttg atagaggggg gcgtcgagga agatgaattt
1551 tgcattgtgg attgtccaag cacggagtgc tgcattttcc tctttgtcga
1601 ggaagtcttt atagctagcc ccctctccag gattgcacag cacgattgaa
1651 gggaccccac cttcaattaa acgaggcttt ccgtacttgc aatttgtctg
1701 ccatttttgt tgggccccta ttagctcttt ccagtgtttc aactttaagt
1751 aatgcggagc gacgtcatca atgacgttat actccacttc gtctgagaac
1801 acctttgagt tgaaatctag atggccactc aagtaattat gtgggcctaa
1851 tgctctagcc cacatcgtct tacctgttcg actacctcct tcaacaatta
1901 aacttatagg cctcaatggc cgcgcagcgg aacccctccc aaaataatca
1951 tcggcccact cttgcatctc gtctggcacg ttagtgaatg aggagagttg
2001 atacggaggg gcccatggct ccggagcctt tgcaaagatt ttatctaaat
2051 tactatttag attgtgaaac tgaaataaga acttttccgg taacttttcc
2101 ctaacgatct gcaaggcggc ttctttagaa ggggcgttca aggcttctgc
2151 ggcagcgtcg ttagctgttt ggcaaccgcc tctagcactt cttccgtcga
2201 cctggaaatc tccccattcg attgtgtccc cgtccttgtt gatgtaggac
2251 ttgacgtcgg acgctgattt agctccctga atgttcggat ggaaatgtac
2301 tgaccgggac ggggacacca gatcgaagaa tctctgattc gtgcactgga
2351 atttcccttc gaactgtata agcacgtgga gatgtggctg cccatcttcg
2401 tgaagttctc tgcaaatctt tacgaacttc ttgttaactg gtgttgttaa
2451 gctctgtaat tgggaaagtg tctcctcttt ggttaaggag cactggggat
2501 atgtcaagaa ataattcttg gcacttattt taaaacgctt tggcggtggc
2551 atttttgtaa ataaaggggt gtaccccaga tgagagctcg ctctataagt
2601 cttatgtatt ggggtaatgg ggacaatata tagtagaagt tcttaaggga
2651 ctagtagcgg ccatccgcac taatatt