Sequence of DPV Beet black scorch virus
Beet black scorch virus, complete genome, isolate Ir-Ksh3
ACC No: FN543467
Dated: 2009-11-20 | Length: 3644 | CRC: -824364885
ID FN543467; SV 1; linear; genomic RNA; STD; VRL; 3644 BP.
XX
AC FN543467;
XX
DT 20-NOV-2009 (Rel. 102, Created)
DT 20-NOV-2009 (Rel. 102, Last updated, Version 1)
XX
DE Beet black scorch virus, complete genome, isolate Ir-Ksh3
XX
KW complete genome.
XX
OS Beet black scorch virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Necrovirus.
XX
RN [1]
RP 1-3644
RA Mehrvar M.;
RT ;
RL Submitted (19-AUG-2009) to the EMBL/GenBank/DDBJ databases.
RL Mehrvar M., Phytopathology (FYMY), UCL University, SE/AGRO:BAPA/FYMY, Croix
RL du sud, 2, bte.03, Louvain-la-Neuve/1348, BELGIUM.
XX
RN [2]
RA Mehrvar M., Bragard C.;
RT "Iranian Beet black scorch virus is more diverse than anywhere else";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3644
FT /organism="Beet black scorch virus"
FT /isolate="Ir-Ksh3"
FT /mol_type="genomic RNA"
FT /country="Iran:Kermanshah, Islam Abad Gharb"
FT /isolation_source="Beta vulgaris"
FT /collected_by="Mohsen Mehrvar"
FT /db_xref="taxon:196375"
FT CDS join(36. .644,648. .2210)
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase, p82"
FT /note="ORF2"
FT /note="produced by translational readthrough of ORF1"
FT /protein_id="CBA34980.1"
FT /translation="MDSIPYVILRILNFVLYSIIFPSLLFFINHHTTILWACLCAYGFY
FT RAFRLIFKIKVEVHPATRAVFNDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK
FT DIKRVRASRRVSYAARVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA
FT VPLAVAACFIPLDSDFLAASIRNCNEMEERRAVLGPSYGKGGLLCTSGFTTPTWRGNPE
FT GLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDGLAPTP
FT KPTPGVYAKLSRFHDLVSSNLTSTTRLTYEQFLGFYSGRKLERYQQAAESLAIRPIGVQ
FT DAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEIGRFLRHAEEHLFDAINRVYGGR
FT TVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHRIWLSMYHGAD
FT RKVLSKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCASVHNYCSRL
FT GVKRFRLANNGDDCMLVVESKDEARVRQGLIEYYRELGFTMKVEPTVYELEHIEFCQTR
FT PVLVDGAYRMVRNLHQGMSKDLHSLHDLGSKKAAEAWVSAAGSGGRVMNDGVPVLKSFF
FT KQFPLLSGPKTKSDMSIALQEDWKYKFNRTGCFKDLTPTPQSRYSFWRAFGVLPDEQIA
FT LEKGFSRLSFDKLDQDIQEEVSLLQFSGA"
FT CDS 36. .647
FT /product="RNA polymerase, p23"
FT /note="ORF1"
FT /protein_id="CBA34981.1"
FT /translation="MDSIPYVILRILNFVLYSIIFPSLLFFINHHTTILWACLCAYGFY
FT RAFRLIFKIKVEVHPATRAVFNDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK
FT DIKRVRASRRVSYAARVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA
FT VPLAVAACFIPLDSDFLAASIRNCNEMEERRAVLGPSYGK"
FT CDS 2228. .2419
FT /product="7K protein A, p7a"
FT /note="ORF3"
FT /protein_id="CBA34982.1"
FT /translation="MEQQRSEQRRERRVRSRSEDRKSMSDVGQSAVNREADVKKDMGPS
FT VSMTVVGENVEFTQHFHF"
FT CDS 2421. .2618
FT /product="7K protein B, p7b"
FT /note="ORF4"
FT /protein_id="CBA34983.1"
FT /translation="MSTIYVVHEKPSGFLVWAFVVAIVCIIGHLSYTQPERLNHSYHEN
FT NQKTQYITIGGASTSKVSMN"
FT CDS 2434. .2577
FT /product="5K protein A, p5a"
FT /note="ORF5"
FT /protein_id="CBA34984.1"
FT /translation="MLCMRSLRGFSCGHLLLQLCVSLDTYRTPNLKDLTTLITKTIRRR
FT NT"
FT CDS 2647. .3345
FT /product="coat protein, p25"
FT /note="ORF6"
FT /protein_id="CBA34985.1"
FT /translation="MAPKRNKGSRKARMSDETVRAPAAGGVIQRTPGIPPRIRSTTFGT
FT RVTNTELLAGINVSAGGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLSIKLIYVPIVPT
FT TTAGAMTMALSYDPADATPASFQQVQQMYNSITAPVWAGFDGATVQLLGDRPTTRAVCI
FT DVDVDRFGFTWYRYATLAAINALTANDRNLYIPSVCNVATSGGTLATNVGNLMIKYSIE
FT LIEPIPAAIN"
FT CDS 2693. .2977
FT /product="10K hypothetical protein, p10"
FT /note="ORF7"
FT /protein_id="CBA34986.1"
FT /translation="MRLYGLQLLEALYNAHPAFLHVLGPPPLVRVLPTLSCLLASMCQL
FT VVLSQLLGLDCFPATLVGSMGLLQIIVSLGGSPSSLSMFPLSPQPRLGP"
XX
SQ Sequence 3644 BP; 897 A; 841 C; 950 G; 956 T; 0 other;
fn543467 Length: 3644 20-NOV-2009 Type: N Check: 2975 ..
1 aagaaaccta accagtttct cgttgatcag tgatcatgga ttcaatcccg
51 tatgtgatcc tgcgcatact gaattttgtc ctttactcca tcatctttcc
101 ttcacttctc ttcttcatca accaccacac taccatccta tgggcatgtt
151 tgtgtgccta cggattctac cgcgcgtttc gcctcatctt caagattaag
201 gtcgaagtgc accctgccac tcgtgctgtc tttaatgata tggtcactcg
251 ctttcagcgg gagagcatgt tttcacctga cgacgaagtg cctgagggca
301 tccccatcca cgaggatgtt gaccttgtta gcgaccccac acacaaagat
351 attaagaggg tccgtgctag caggcgagtc tcatatgctg cgagggtagc
401 ccatgtagcc aagtcgaagg tgggattact cgccaacact aaggcaaatg
451 agctggtgta ctctcgattg tgtcgggatg agatggtgac gcacggtgtt
501 cgtccatcgc acatcgcaca tgcagtgccg ctggctgtcg cggcctgttt
551 tataccattg gacagtgact ttcttgcagc ttcaattaga aactgcaatg
601 agatggaaga gcggagggcc gttttagggc cctcatatgg aaaataggga
651 ggcctactct gcaccagcgg gtttaccaca ccgacttggc gtggtaatcc
701 agagggtttg ctggtgaaga gaggacctcc tctggccaaa cctagaaaat
751 tataccgttt ttccgggttt gggactcata tacggtatgg agtgcatgac
801 cactccctgg gcaatgttcg gaggggactt gttgagcgtc tgttcatggt
851 ggaaaccaag gacgggcttg ctccaacacc taagcccacc cctggcgtgt
901 atgccaagtt atcccggttt catgacctag tcagttccaa tctaacctcg
951 accaccagat tgacatacga gcagtttctc ggattttatt ctggtcgcaa
1001 attagaaagg taccagcagg ccgcggagtc gttagcaatc cgcccaatag
1051 gggtacagga tgcttggctt agcacgttcg tgaaggctga aaaattaaac
1101 atctcagcta aacccgaccc ggcacctagg gttattcagc ctaggtcgcc
1151 gaggtacaat gtggagatcg gacggttcct cagacatgct gaggaacatc
1201 tgttcgatgc tatcaatcgt gtgtatggtg ggcgcacagt gttcaaaggg
1251 ttgaacgctg atcaggctgg catggagatg caagccatgt ggcaagaatt
1301 tgacaatccc gttggtattg gcatggatgc ctcccggttc gaccaacacg
1351 tctcgaaaga ggcgttggag tttgaacaca ggatatggct atccatgtac
1401 catggagctg ataggaaggt gctgtcaaag cttttgggaa tgcaaattca
1451 caatcgcggt cttgccagat gccctgatgg ggagatcagg tacacggttg
1501 aagggtgtcg tatgtctggg gatattaaca cttcctctgg taactgttat
1551 ataatgtgtg catccgtaca caattattgc agtcggttgg gtgttaagcg
1601 gtttaggctt gccaataatg gtgacgattg catgcttgtg gtcgaatcca
1651 aggacgaagc acgtgtaagg cagggactca tcgagtatta cagggagcta
1701 gggttcacca tgaaggtaga acccactgtc tatgaactcg agcatattga
1751 gttttgccaa acacgcccag tccttgttga tggtgcttac agaatggtac
1801 gcaatcttca ccagggtatg tccaaggacc tacactcctt gcatgatctt
1851 ggtagcaaga aggctgctga ggcttgggtt tcagcagcgg ggagcggggg
1901 tcgcgtgatg aacgatggag taccagtgct caaatcgttt ttcaagcaat
1951 tccccttgct ctctggacct aaaaccaagt ccgatatgag tatagcgttg
2001 caggaagatt ggaaatacaa gttcaatcgg actgggtgtt tcaaggattt
2051 aacacccact ccacaatccc gctactcatt ttggcgtgcg tttggagtgt
2101 taccagatga acagatagcc ctggagaagg gattttctcg tcttagcttt
2151 gataagttgg accaggatat ccaggaggag gttagcctcc tccaattctc
2201 tggggcatga aaacctaacc acttttcatg gaacaacagc gtagtgaaca
2251 acgtcgtgaa cgtagagtga gaagtagatc ggaggacagg aagtcgatgt
2301 ctgatgtagg acagtctgct gtgaataggg aagcggatgt caagaaggat
2351 atgggtccat cggtctctat gacggtggtg ggggaaaacg tggagttcac
2401 acaacatttc cacttctgaa atgagcacca tttatgttgt gcatgagaag
2451 ccttcggggt ttctcgtgtg ggcatttgtt gttgcaattg tgtgtatcat
2501 tggacactta tcgtacaccc aacctgaaag acttaaccac tcttatcacg
2551 aaaacaatca gaagacgcaa tacataacta ttggaggagc atccactagt
2601 aaagtttcca tgaactgaat ttactgcttt ctagtatagt taataaatgg
2651 cacctaagcg taataaaggg agtaggaaag ctcgtatgtc cgatgagact
2701 gtacgggctc cagctgctgg aggcgttata caacgcacac ccggcattcc
2751 tccacgtatt aggtccacca cctttggtac gcgtgttacc aacactgagt
2801 tgcttgctgg catcaatgtg tcagctggtg gtgctttctc agttgttggg
2851 gctggactgt ttcccagcaa ccttggttgg ctcaatggga ttgcttcaaa
2901 ttatagtaag tttaggtggc tctccatcaa gcttatctat gttcccattg
2951 tccccacaac cacggctggg gccatgacta tggctttatc atacgatccc
3001 gctgatgcta cacccgccag cttccagcag gtgcaacaga tgtataacag
3051 catcactgca cctgtttggg ctggtttcga tggagctact gttcagctgt
3101 taggggatcg gccaacgacc agagctgtgt gtatcgatgt tgatgtcgac
3151 cggttcggtt tcacatggta taggtatgca acactcgctg ctattaacgc
3201 actcactgct aatgatagga atctatatat ccctagcgtt tgcaatgtgg
3251 ctacgagcgg cggaactctt gctaccaatg ttggcaattt aatgataaaa
3301 tacagtatag agcttatcga gcctataccc gctgccatta attagatccc
3351 acatcctggt gtggttaatc cagtgaagaa tattaggaaa tccttgggac
3401 tcacacccca aggaggattg cttgcatggt gcaggtatgt tgagttacac
3451 tgtgaggtat cgatgctgga tcctgggaaa caggcttgac aggtttgggt
3501 ggttccaaac cgctgcatca ctcgagatac tcacggtatt caacaaggaa
3551 acaccatgcg tgcgcacacg gctggctatg tcctatcata gccgggggct
3601 ccggagtgcg aaaccctctt atatacctgg tcttccaggt gccc