Sequence of DPV Beet black scorch virus
Beet black scorch virus, complete genome, isolate Ir-AzGh1
ACC No: FN543469
Dated: 2009-11-20 | Length: 3644 | CRC: -1206622073
ID FN543469; SV 1; linear; genomic RNA; STD; VRL; 3644 BP.
XX
AC FN543469;
XX
DT 20-NOV-2009 (Rel. 102, Created)
DT 20-NOV-2009 (Rel. 102, Last updated, Version 1)
XX
DE Beet black scorch virus, complete genome, isolate Ir-AzGh1
XX
KW complete genome.
XX
OS Beet black scorch virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Necrovirus.
XX
RN [1]
RP 1-3644
RA Mehrvar M.;
RT ;
RL Submitted (19-AUG-2009) to the EMBL/GenBank/DDBJ databases.
RL Mehrvar M., Phytopathology (FYMY), UCL University, SE/AGRO:BAPA/FYMY, Croix
RL du sud, 2, bte.03, Louvain-la-Neuve/1348, BELGIUM.
XX
RN [2]
RA Mehrvar M., Bragard C.;
RT "Iranian Beet black scorch virus is more diverse than anywhere else";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3644
FT /organism="Beet black scorch virus"
FT /isolate="Ir-AzGh1"
FT /mol_type="genomic RNA"
FT /country="Iran:Azarbaeijan Gharbi, Mohammad Yar"
FT /isolation_source="Beta vulgaris"
FT /collected_by="Mohsen Mehrvar"
FT /db_xref="taxon:196375"
FT CDS join(36. .644,648. .2210)
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase, p82"
FT /note="ORF2"
FT /note="produced by translational readthrough of ORF1"
FT /protein_id="CBA34994.1"
FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIIKHNTTILWACLCAYGFY
FT RTFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK
FT DIKRVRASRRVSYAVRVAHVAKPKVGLLANTKANELVYSRLCRDEMVIHGVRPSHIAHA
FT VPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGKGGLLCTSGFTTPTWRGNPE
FT GLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDGLAPTP
FT KPTPGVYAKLSRFHDLVSANLISTTRLTYEQFLGFYSGRKLERYQQAVESLAIRPIGVQ
FT DAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDAINRVYGGR
FT TVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHKIWLSMYHGSD
FT RKTLAKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCATVHNYCSRL
FT GVKRFRLADNGDDCMLVVEAKDEARVRQGLIEYYRELGFTMKVEPTVYELEHLEFCQTR
FT PVLVDGAYRMVRNLHQGMSKDLHSLHDLGSRKAAEAWVSAVGSGGRVMNDGVPVLKSFF
FT MQFPLSAAPKTRSDMSIALQEDWKYKFNRTGCFRNLAPTPQSRYSFWRAFGVLPDEQIA
FT LENGFSRLSFDKLDQDIQEEVSLLQFSGA"
FT CDS 36. .647
FT /product="RNA polymerase, p23"
FT /note="ORF1"
FT /protein_id="CBA34995.1"
FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIIKHNTTILWACLCAYGFY
FT RTFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK
FT DIKRVRASRRVSYAVRVAHVAKPKVGLLANTKANELVYSRLCRDEMVIHGVRPSHIAHA
FT VPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGK"
FT CDS 2228. .2419
FT /product="7K protein A, p7a"
FT /note="ORF3"
FT /protein_id="CBA34996.1"
FT /translation="MEQQRSEQRRERRVRSRSEDRKSMSDVGQSAVNREADVKKDMGPS
FT VSMTVVGENVEFTQHFHF"
FT CDS 2421. .2618
FT /product="7K protein B, p7b"
FT /note="ORF4"
FT /protein_id="CBA34997.1"
FT /translation="MGTIYVVREEPSGFLVWAFVVAIVCIIGLLSYTPPERLNHSYHEN
FT NQKTQYITIGGASTSKVSTN"
FT CDS 2434. .2577
FT /product="5K protein A, p5a"
FT /note="ORF5"
FT /protein_id="CBA34998.1"
FT /translation="MLFAKNPQGSSCGHSLLQLCVSLDSYRTPHLKDLTTLITKIIRRR
FT NT"
FT CDS 2647. .3345
FT /product="coat protein, p25"
FT /note="ORF6"
FT /protein_id="CBA34999.1"
FT /translation="MAPKRNKGGRKIRMSDETVRAPAAGGVVQRTPGIPPRIRSTTIGT
FT RVSNTELLAGVNVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLSIKLIYFPIVPT
FT TTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFDGATVQLLGDRPTTGAVCI
FT DVDVNRFGFTWYGYATLAAITALTANDRNLYIPSVCNVATSGGSAATNVGNLMIKYSIE
FT LIEPIPAAIN"
FT CDS 2693. .2929
FT /product="9K hypothetical protein, p9"
FT /note="ORF7"
FT /protein_id="CBA35000.1"
FT /translation="MRRCELLLLVVWYNAHPVFPHVLGPPLLVREYPTQNYLLVSMLQQ
FT QVHFLSLEPVFSLATLVGLTGLLPITASLDGFL"
FT CDS 3410. .3547
FT /product="5K hypothetical protein B, p5b"
FT /note="ORF8"
FT /protein_id="CBA35001.1"
FT /translation="MEDCLHDAGMLSHTVRYRCWILVNRLDRFGWFQTDVSLEIFIVLS
FT "
XX
SQ Sequence 3644 BP; 910 A; 856 C; 937 G; 941 T; 0 other;
fn543469 Length: 3644 20-NOV-2009 Type: N Check: 3086 ..
1 aagaaaccta accagtttct cgttgatcag cgatcatgga ttctatcccg
51 tatgtgatcc tgcgcatact tgattttatc tttcactcca tcttctttcc
101 atcccttctc tttatcatca aacacaacac caccatccta tgggcttgtc
151 tatgtgccta tgggttctac cgtactttcc gcctagtctt caagatcaag
201 gttgaggtac acccagccac ccgtgctgtc tttaaggaca tggtcacccg
251 tttccagcgg gagagtatgt tctcacccga cgatgaagtg cctgagggca
301 tccctatcca cgaggacgta gaccttgtta gcgaccccac acacaaagat
351 attaagaggg tccgagctag caggcgagtc tcatacgctg tgagggttgc
401 tcatgtagcc aagccaaagg tgggactact cgcgaacacc aaggcaaatg
451 agctggtgta ttctcggctt tgtcgagatg agatggttat ccacggtgtg
501 cgcccatcac acattgcgca tgcagtgccg ctcgctgtcg cggcctgctt
551 tattccactg gacagtgatt tcttggcagc atcaattaga aactgccagg
601 agatggaaga gcggagggcc gttttagggc cctcatatgg aaaataggga
651 ggcctactct gcaccagcgg gtttaccaca ccaacttggc gtggtaatcc
701 agagggtttg ctggtgaaga gaggaccacc tctggccaaa cccagaaaac
751 tgtaccgttt ttctggattt gggactcata tacggtacgg agtgcacgat
801 cactccttgg gcaatgttcg gaggggactt gtcgagcggc tattcatggt
851 agagaccaag gatggtcttg ctccgacacc aaagcccacc cctggcgtgt
901 atgccaagtt atcccggttc catgaccttg ttagtgctaa tctaatctcg
951 accaccagat taacatacga gcaattcctc ggattttatt ctggtcgcaa
1001 attggagagg taccaacagg ctgtggagtc gttagcaatc cgccctatag
1051 gggtccagga tgcttggctc agcacgttcg ttaaggctga aaaactcaac
1101 atctcagcta aacccgaccc ggcacctagg gtcattcagc ctaggtcgcc
1151 gcggtacaat gtggaggttg gacggttcct cagacatgct gaggaacatc
1201 tgttcgatgc tattaaccgt gtgtatggtg gacggacagt attcaagggg
1251 ttgaatgctg atcaggctgg catggagatg caagccatgt ggcaagaatt
1301 tgacaatcct gtcggtattg gcatggacgc ctctcggttt gatcaacacg
1351 tttccaagga ggcgttggag ttcgaacaca agatatggtt gtccatgtac
1401 catggctctg acaggaaaac attggcaaag ctgttgggga tgcaaatcca
1451 caatcgcggt cttgctagat gtcctgatgg ggaaatcagg tacacggttg
1501 aagggtgtcg tatgtctgga gacattaaca cctcttccgg caactgttat
1551 ataatgtgcg caactgtgca caattattgc agccggttgg gtgttaagag
1601 gttcaggctt gccgacaatg gtgatgattg catgctagtc gtggaagcta
1651 aggatgaagc gcgtgtaagg caagggctta ttgaatacta tagggagttg
1701 ggattcacaa tgaaagtgga acccactgtc tatgaacttg agcatcttga
1751 gttttgccaa acccgcccag tcctggttga tggggcttac agaatggtgc
1801 gcaatctaca ccagggcatg tcgaaggacc tacactcctt gcatgatctt
1851 ggaagtagga aagctgccga ggcatgggtc tcagcagttg gcagtggggg
1901 acgagtgatg aatgacgggg tgcctgtact caagtcgttc tttatgcagt
1951 ttcccctttc tgctgctcct aaaaccaggt ctgatatgag tatagcgttg
2001 caggaagatt ggaaatacaa attcaatcgg actgggtgtt ttagaaattt
2051 agcacccact ccacaatccc gctactcatt ttggcgtgca tttggagtgt
2101 tgccagatga acagattgcc ctggaaaacg gattttctcg tctgagtttt
2151 gataaactag accaggatat ccaggaggag gttagccttc tccagttttc
2201 tggggcatga aaacctaacc acttttcatg gaacaacagc gtagtgaaca
2251 gcgtcgtgaa cgtagggtga gaagcagatc ggaggacagg aagtctatgt
2301 ctgatgtggg acagtctgca gtcaataggg aagcagacgt caagaaagac
2351 atgggtccat cggtctctat gacggtggtg ggggagaacg tggagttcac
2401 acaacatttc cacttctgaa atgggcacaa tctatgttgt tcgcgaagaa
2451 ccctcagggt tcctcgtgtg ggcattcgtt gttgcaattg tgtgtatcat
2501 tggactctta tcgtacaccc cacctgaaag acttaaccac tcttatcacg
2551 aaaataatca gaagacgcaa tacataacta ttggaggagc atccactagt
2601 aaggtttcca cgaactgaat ttactgcttt ctagtataga taataaatgg
2651 cacctaaacg caacaaagga ggtaggaaga tccgcatgtc cgatgagacg
2701 gtgcgagctc ctgctgctgg tggtgtggta caacgcacac ccggtattcc
2751 cccacgtatt aggtccacca ctattggtac gcgagtatcc aacacagaat
2801 tacttgctgg tgtcaatgtt gcagcagcag gtgcattttc tgtcgttgga
2851 gccggtcttt tccctagcaa ccttggttgg cttaacggga ttgcttccaa
2901 ttacagcaag tttagatggc tttctataaa gctcatctat tttcccattg
2951 tccctacaac cactgctggc gctatgacca tggctttatc atacgacccg
3001 gctgatgcta cacctaccag cttccaacaa gtgcaacaga tgtataacag
3051 cataactgca cctgtatggg ctggatttga tggagctact gttcagctat
3101 tgggggatcg cccaacaact ggtgccgtgt gtatcgacgt tgatgtcaat
3151 cgatttggat tcacatggta cgggtacgca accttagccg ctatcacagc
3201 actcactgca aacgacagga atctgtatat tcctagcgtt tgcaatgtgg
3251 ctacttctgg cggatcagct gcgactaatg ttggcaactt aatgataaag
3301 tacagcattg agctcattga gcccataccc gctgccatca attagacccc
3351 acatcctggt gtggttaatc cagtgaaaaa tattaggaaa tccatgggat
3401 tcacacccca tggaggattg cttgcatgat gcaggtatgc ttagtcacac
3451 tgtgaggtat cgatgctgga tcctggtaaa caggcttgac aggtttgggt
3501 ggttccaaac cgatgtatca ctcgagatat tcatagtact aagctagaaa
3551 acatcatgcg tgcgcacacg gccggctacg tcctatcgta gtcgggggct
3601 ccggagtgcg aaaccctctt atatacctgg tcttccaggt gccc