Sequence of DPV Beet black scorch virus
Beet black scorch virus, complete genome, isolate Ir-Sh1
ACC No: FN543471
Dated: 2009-11-20 | Length: 3644 | CRC: 597429081
ID FN543471; SV 1; linear; genomic RNA; STD; VRL; 3644 BP.
XX
AC FN543471;
XX
DT 20-NOV-2009 (Rel. 102, Created)
DT 20-NOV-2009 (Rel. 102, Last updated, Version 1)
XX
DE Beet black scorch virus, complete genome, isolate Ir-Sh1
XX
KW complete genome.
XX
OS Beet black scorch virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Necrovirus.
XX
RN [1]
RP 1-3644
RA Mehrvar M.;
RT ;
RL Submitted (19-AUG-2009) to the EMBL/GenBank/DDBJ databases.
RL Mehrvar M., Phytopathology (FYMY), UCL University, SE/AGRO:BAPA/FYMY, Croix
RL du sud, 2, bte.03, Louvain-la-Neuve/1348, BELGIUM.
XX
RN [2]
RA Mehrvar M., Bragard C.;
RT "Iranian Beet black scorch virus is more diverse than anywhere else";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3644
FT /organism="Beet black scorch virus"
FT /isolate="Ir-Sh1"
FT /mol_type="genomic RNA"
FT /country="Iran:Khorasan Shomali, Shirvan"
FT /isolation_source="Beta vulgaris"
FT /collected_by="Mohsen Mehrvar"
FT /db_xref="taxon:196375"
FT CDS join(36. .644,648. .2210)
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase, p82"
FT /note="ORF2"
FT /note="produced by translational readthrough of ORF1"
FT /protein_id="CBA35009.1"
FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIIKHNTTILWACLCAYGFY
FT RAFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK
FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA
FT VPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGKGGLLCTSGFTTPTWRGNPE
FT GLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDGLAPTP
FT KPTPGVYAKLSRFHDLVSANLTSTTRLTYEQFLGFYSGRKLERYQQAVESLAIRPIGVQ
FT DAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDAINRVYGGR
FT TVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHKIWLSMYHGSD
FT RKTLAKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCATVHNYCSRL
FT GVKRFRLANNGDDCMLVVEAKDEARVRQGLIEYYRELGFTMKVEPTVYELEHLEFCQTR
FT PVLVDGAYRMVRNLHQGMSKDLHSLHDLGSRKAAEAWVSAVGSGGRVMNDGVPVLKSFF
FT MQFPLSAAPKTKSDMSIALQEDWKYKFNRTGCFRNLAPTPQSRYSFWRAFGVLPDEQIA
FT LENGFSRLSFDKLDQDIQEEVSLLQFSGA"
FT CDS 36. .647
FT /product="RNA polymerase, p23"
FT /note="ORF1"
FT /protein_id="CBA35010.1"
FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIIKHNTTILWACLCAYGFY
FT RAFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK
FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA
FT VPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGK"
FT CDS 2228. .2419
FT /product="7K protein A, p7a"
FT /note="ORF3"
FT /protein_id="CBA35011.1"
FT /translation="MEQQRSEQRRERRVRSRSEDRKSMSDVGQSAVNREADVKKDMGPS
FT VSMTVVGENVEFTQHFHF"
FT CDS 2421. .2618
FT /product="7K protein B, p7b"
FT /note="ORF4"
FT /protein_id="CBA35012.1"
FT /translation="MGTVYVVREEPSGFLVWAFVVAIVCIIGLLSYTPPERLNHSYHEN
FT NQKTQYITIGGASTSKVSTN"
FT CDS 2434. .2577
FT /product="5K protein A, p5a"
FT /note="ORF5"
FT /protein_id="CBA35013.1"
FT /translation="MLFAKNPQGSSCGHSLLQLCVSLDSYRTPHLKDLTTLITKIIRRR
FT NT"
FT CDS 2647. .3345
FT /product="coat protein, p25"
FT /note="ORF6"
FT /protein_id="CBA35014.1"
FT /translation="MAPKRNKGGRKTRMSDETVRAPAAGGVIQRTPGIPPRIRSTTIGT
FT RVSNTELLAGVNVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLSIKLIYIPIVPT
FT TTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFDGATVQLLGDRPTIGAVCI
FT DVDVNRFGFTWYRYATLAAITALTANDRNLYIPSVCNVATSGGSAATNVGNLMIKYSIE
FT LIEPIPAAIN"
FT CDS 3410. .3547
FT /product="5K hypothetical protein B, p5b"
FT /note="ORF7"
FT /protein_id="CBA35015.1"
FT /translation="MEDCLHDAGMFSHTVRYRCWILVNRLDRFGWFQTDVSLEIFIVLS
FT "
XX
SQ Sequence 3644 BP; 914 A; 853 C; 935 G; 942 T; 0 other;
fn543471 Length: 3644 20-NOV-2009 Type: N Check: 2868 ..
1 aagaaaccta accagtttct cgttgatcag cgatcatgga ttctatcccg
51 tatgtgatcc tgcgcatact tgattttatc tttcactcca tcttctttcc
101 atcccttctc tttatcatca aacacaacac caccatccta tgggcttgtc
151 tatgtgccta tgggttctac cgtgctttcc gccttgtttt caagatcaag
201 gttgaggtac atccagccac ccgtgctgtc tttaaggaca tggtcacccg
251 tttccagcgg gagagtatgt tctcgcctga cgatgaagtg cctgagggca
301 tccctatcca cgaggacgta gaccttgtta gcgaccccac acacaaagat
351 attaagaggg tccgagctag caggcgagtc tcatacgctg tgagggttgc
401 tcatgtagcc aagtcaaagg tgggactact tgcaaatacc aaggcaaatg
451 agctggtgta ttctcggctt tgtcgagatg agatggtcac ccacggtgtg
501 cgcccatcac acattgcgca tgcagtgccg ctcgctgtcg cggcctgttt
551 tatcccattg gacagtgatt tcttggcagc atcaattaga aactgccagg
601 agatggaaga gcggagggcc gttttggggc cctcatatgg aaaataggga
651 ggcctactct gcaccagcgg gtttaccaca ccaacttggc gtggtaatcc
701 agagggtttg ctggtgaaga gaggaccacc tctggccaaa cctagaaaac
751 tgtaccgttt ttctggattt gggactcata tacggtacgg agtgcacgat
801 cactccttgg gcaatgttcg gaggggactt gtcgagcggc tattcatggt
851 agagaccaaa gatggccttg ctccgacacc aaagcccacc cctggcgtgt
901 atgccaagtt atcccggttc catgaccttg ttagtgccaa tctaacctcg
951 accaccagat taacatacga gcaatttctc gggttttatt ctggtcgcaa
1001 attggagagg taccaacagg ctgtggagtc gttagcaatc cgccctatag
1051 gggtccagga tgcttggctt agcacgttcg ttaaggctga aaaactcaac
1101 atttcagcta aacccgaccc ggcacctagg gtcattcagc ctaggtcgcc
1151 gcggtacaat gtggaggttg gacggttcct cagacatgct gaggaacatc
1201 tgttcgatgc cattaaccgt gtgtatggtg gacggacagt attcaagggg
1251 ttgaatgctg atcaggctgg catggagatg caagccatgt ggcaagagtt
1301 tgacaatcct gtcggcattg gcatggacgc ctctcggttt gatcaacacg
1351 tttccaagga ggcgttggag ttcgaacaca agatatggtt gtccatgtac
1401 catggctctg acaggaaaac attggcaaag ctgttgggga tgcaaatcca
1451 caatcgcggt cttgctagat gtcctgatgg ggaaatcagg tacacggttg
1501 aagggtgtcg tatgtctgga gatatcaaca cctcttccgg caactgttat
1551 ataatgtgtg caactgtgca caattattgc agccggttgg gtgttaagag
1601 gttcaggctt gccaataatg gtgatgattg catgctagtc gtggaagcta
1651 aggatgaagc gcgtgtaagg caagggctta ttgaatacta tagggagttg
1701 ggattcacaa tgaaagtgga acccactgtc tacgaacttg agcatcttga
1751 gttttgccaa acccgcccag tcctggttga tggggcttac agaatggtgc
1801 gcaatctaca ccagggcatg tcgaaggacc tacactcctt gcatgatctt
1851 ggaagtagga aagctgccga ggcatgggtc tcagcagttg gcagtggggg
1901 acgagtgatg aatgacgggg tgcctgtact taagtcgttc ttcatgcagt
1951 ttcccctatc tgctgctccc aaaaccaagt ctgatatgag tatagcgttg
2001 caggaagatt ggaaatacaa attcaatcgg actgggtgtt tcagaaattt
2051 agcacccact ccacaatccc gctactcatt ttggcgtgca tttggagtgt
2101 tgccagatga acagattgcc ctggaaaacg gattttctcg tctaagtttt
2151 gacaaactag accaggatat ccaggaggag gttagccttc tccagttctc
2201 tggggcatga aaacctaacc aattttcatg gaacaacagc gtagtgaaca
2251 gcgtcgtgaa cgtagggtga gaagcagatc ggaggacagg aagtctatgt
2301 ctgatgtggg acagtctgca gttaataggg aagcagacgt caagaaagac
2351 atgggtccat cggtctctat gacggtggtg ggggagaacg tggagttcac
2401 acaacatttc cacttctgaa atgggcacag tctatgttgt tcgcgaagaa
2451 ccctcagggt tcctcgtgtg ggcattcgtt gttgcaattg tgtgtatcat
2501 tggactccta tcgtacaccc cacctgaaag acttaaccac tcttatcacg
2551 aaaataatca gaagacgcaa tacataacta ttggaggagc atccactagt
2601 aaggtttcca cgaactgaat ttactgcttt ctagtataga taataaatgg
2651 cacctaaacg caacaaagga ggtaggaaga cccgcatgtc cgatgagacg
2701 gtgcgagctc ctgccgctgg aggtgtgata caacgcacac ccggtatccc
2751 tccacgtatt aggtccacca ctattggtac gcgagtatcc aacacagaat
2801 tgcttgctgg tgtcaatgtt gcagcagcag gtgcattttc tgtcgttgga
2851 gccggtcttt tccccagtaa ccttggttgg ctcaatggga ttgcttccaa
2901 ctacagcaag tttagatggc tttctataaa gctcatctat attcccattg
2951 tccctacaac cactgctggc gctatgacca tggctttatc atacgacccg
3001 gctgatgcta cacctaccag cttccaacaa gtgcaacaaa tgtataacag
3051 cataactgca cctgtgtggg ctggatttga tggagctact gttcagctat
3101 taggggatcg cccaacaatt ggtgccgtgt gtatcgatgt tgatgtcaat
3151 cgatttggat tcacatggta caggtacgca accttagccg ctattacagc
3201 actcactgca aacgacagga atctatacat tcctagcgtt tgcaatgtgg
3251 ctacttctgg cggatctgct gcgactaatg ttggcaactt aatgataaag
3301 tacagcattg agctcattga gcccataccc gctgccatca attagatccc
3351 acatcctggt gtggttaatc cagtgaaaaa tattaggaaa tccatggaat
3401 tcacacccca tggaggattg cttgcatgat gcaggtatgt ttagtcacac
3451 tgtgaggtat cgatgctgga tcctggtaaa caggcttgac aggtttgggt
3501 ggttccaaac cgatgtatca ctcgagatat tcatagtact aagctagaaa
3551 acatcatgcg tgcgcacacg gccggctacg tcctatcgtg gccgggggct
3601 ccggagtgcg aaaccctctt atatacctgg ttttccaggt gccc