Sequence of DPV Cotton leaf curl Gezira virus
Cotton leaf curl Gezira virus-[okra:BFA] segment DNA-A, isolate BF:Kampala:Okra6
ACC No: FN554526
Dated: 2010-04-07 | Length: 2763 | CRC: -550898925
ID FN554526; SV 1; circular; genomic DNA; STD; VRL; 2763 BP.
XX
AC FN554526;
XX
DT 25-NOV-2009 (Rel. 102, Created)
DT 07-APR-2010 (Rel. 104, Last updated, Version 2)
XX
DE Cotton leaf curl Gezira virus-[okra:BFA] segment DNA-A, isolate
DE BF:Kampala:Okra6
XX
KW .
XX
OS Cotton leaf curl Gezira virus-[okra:BFA]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2763
RA Tiendrebeogo F.;
RT ;
RL Submitted (25-SEP-2009) to the EMBL/GenBank/DDBJ databases.
RL Tiendrebeogo F., CRSBAN/UFR/SVT Universite de Ouagadougou,
RL Biochimie-Microbiologie, 03 BP 7131 Ouagadougou 03, Ouagadougou, BURKINA
RL FASO.
XX
RN [2]
RA Tiendrebeogo F., Lefeuvre P., Hoareau M., Villemot J., Konate G.,
RA Traore A.S., Barro N., Traore V.S., Reynaud B., Traore O., Lett J.M.;
RT "Molecular diversity of cotton leaf curl Gezira virus isolates and their
RT satellite DNAs associated with okra leaf curl disease in Burkina Faso";
RL Virol. J. 7:48-48(2010).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2763
FT /organism="Cotton leaf curl Gezira virus-[okra:BFA]"
FT /segment="DNA-A"
FT /host="Abelmoshus esculentus"
FT /isolate="BF:Kampala:Okra6"
FT /mol_type="genomic DNA"
FT /country="Burkina Faso:Kampala"
FT /collected_by="Edgar V.S. Traore"
FT /collection_date="10-Oct-2008"
FT /db_xref="taxon:679314"
FT CDS 162. .530
FT /gene="V2"
FT /product="movement protein (MP)"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:D1GZ54"
FT /protein_id="CBG22923.1"
FT /translation="MWDPLLNDFPESVHGFRCMLAVKYLQAVRESYDPSTLGYDLLSDL
FT IGVVRRTNYVEATSRYHHFHSRLESASPSELRQPRVVLCTCPHCPRHKQASGLDQQAHV
FT QKTEDVQNVSQPRCPKGM"
FT CDS 322. .1098
FT /gene="CP"
FT /product="coat protein (CP)"
FT /db_xref="GOA:D1GZ43"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:D1GZ43"
FT /protein_id="CBG22924.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPGLSSARAPTVLVTNKRRAW
FT TNRPTYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTKGVGLTH
FT RTGKRFTIKSIYILGKVWMDDNIKKQNHTNNVMFFLVRDRRPYGNSPLDFGQVFNMFDN
FT EPSTATVKNDLRDHFQVLRKFTATVIGGPSGMKEQALVRRFFRINSQIVYNHQEAGKFE
FT NHTENAILLYMACTHASNPVYATLKIRIYFYDSVSN"
FT CDS complement(1095. .1496)
FT /gene="C3"
FT /product="replication enhancer protein (REn)"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:D1GZ86"
FT /protein_id="CBG22925.1"
FT /translation="MDSRTGELITAHQSENGVLIWTINNPLYFKTIKEFRLTHGNQTMI
FT EMQIRFNYNLRKELGIHKCFMNFRVWTISRPPTGLFLNVFRKQIMKYLYRLGVISINNV
FT IRAVNHVLYDVLQTTVASEFTHNIQIKLY"
FT CDS complement(1240. .1644)
FT /gene="C2"
FT /product="transcription activator protein (TrAP)"
FT /db_xref="GOA:D1GZ87"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:D1GZ87"
FT /protein_id="CBG22926.1"
FT /translation="MRSSSPSQIRCTQVPIKVQHREAKKRAIRRRRIDIPCGCTVYVAF
FT TCRDNGFTHRGTHHCASEREWRTYLDNQQSPVFQNHQGVSSNARESNNDRDADKIQLQP
FT QEGIGDSQMFHELPGLDDLTPSDWSFLKRI"
FT CDS complement(1544. .2632)
FT /gene="C1"
FT /product="replication associated protein (Rep)"
FT /db_xref="GOA:D1GZ88"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:D1GZ88"
FT /protein_id="CBG22927.1"
FT /translation="MAPNKRFQIYAKNFFLTFPKCSLTKEEALEQLQKISTASNKKYIK
FT ICRELHEDGQPHLHVLLQFEGKFKCQNQRLFDLVSPNRSAHFHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKAEALRVIRELATKDFVLQFH
FT NLNSNLERIFQEPPAPYVSPFLSSSFDQVPEELEEWAAENVVEAAARPDRPISIVIEGE
FT SRTGKTVWARSLGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMGAQKDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNAHLKSWAVKNAIFITLSNPL
FT YSGTNQSPASGGEEESNQETQD"
FT CDS complement(2182. .2475)
FT /gene="C4"
FT /product="C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:D1GZ59"
FT /protein_id="CBG22928.1"
FT /translation="MANLICMCFSSSKGSSSAKIRDYSTWSPQIGQHISIQTFRELNPA
FT PTSSPTSTRMETHSNGENSRSTEDLPEEANRQPMTLTPQRLTQEVRQRLLGL"
XX
SQ Sequence 2763 BP; 688 A; 629 C; 604 G; 842 T; 0 other;
fn554526 Length: 2763 07-APR-2010 Type: N Check: 8252 ..
1 accggtgggc gcgaaaaaaa aaagtggtcc ccgccccacg tgaacatgtc
51 gcgcgagtgc tgaacatgtc gcgcgatgct gtccaatcag agcgcgcgct
101 ctacgcatta taatttgaaa tttgaaatat atacttgctc cctaagttgt
151 cctccataac tatgtgggat ccgttattga acgacttccc tgaatccgtt
201 cacggtttcc gttgtatgct cgccgtgaaa taccttcagg ctgttcgtga
251 gtcgtacgat ccttccactc ttggttacga tcttcttagc gatctcatcg
301 gagttgttcg ccgtaccaac tatgtcgaag cgaccagcag atatcatcat
351 ttccactccc gcctcgaaag tgcgtcgccg tctgaacttc gacagcccag
401 ggttgtcctc tgcacgtgcc cccactgtcc tcgtcacaaa caagcgtcgg
451 gcctggacca acaggcccac gtacagaaaa ccgaggatgt acagaatgta
501 tcgcagccca gatgtcccaa agggatgtga aggtccctgt aaggtccagt
551 cttatgaaca gcgtgatgat gtcaagcata cgggtattgt ccgatgtgtg
601 tccgatgtta ctaagggggt tggtcttacc catcgtactg gaaagcgttt
651 cactatcaaa tccatttata tccttggtaa ggtatggatg gatgacaaca
701 ttaagaagca gaatcacacc aacaatgtta tgtttttcct tgtccgtgat
751 agaagaccgt atgggaattc cccgttggat tttggtcaag ttttcaacat
801 gtttgacaac gaacctagca ctgctactgt gaagaacgat ctccgtgatc
851 attttcaggt attgaggaag tttactgcaa ctgttatcgg tggtccttca
901 ggaatgaaag aacaagccct tgttcgtcgt tttttcagga ttaatagtca
951 gattgtgtat aatcatcaag aagctggtaa attcgagaat catacggaga
1001 atgctatatt gttgtatatg gcatgtactc atgcctcaaa ccctgtgtat
1051 gctacgttaa agatacggat ctacttctac gattcggtat ctaattaata
1101 taattttatt tgaatattgt gcgtgaattc acttgccaca gttgtttgca
1151 atacatcgta caaaacatga ttgactgccc taattacatt gttaattgaa
1201 attacaccta atctatacaa atatttcatt atctgcttcc taaatacgtt
1251 taagaaaaga ccagtcggag ggcgtgagat cgtccagacc cggaagttca
1301 tgaaacattt gtgaatcccc aattccttcc tgaggttgta gttgaatctt
1351 atctgcatct ctatcattgt ttgattcccg tgcgttagac gaaactcctt
1401 gatggttttg aaatacaggg gattgttgat tgtccagata agtacgccat
1451 tctcgctctg atgcgcagtg atgagttccc ctgtgcgtga atccattgtc
1501 tctgcacgtg aaggctacgt ataccgtgca accacaaggg atgtcaatcc
1551 tgcgtctcct gattgctctc ttcttcgcct cccgatgctg gactttgatt
1601 ggtacctgag tacagcggat ttgagagggt gatgaagatc gcattcttta
1651 ctgcccagga tttgagatgc gcgttttttt cctcgtctaa atactcttta
1701 taggaggaat tgggacctgg attgcagagg aagattgttg ggatgccacc
1751 tttaatttga actggtttcc cgtatttcgt gttgctttgc cagtcctttt
1801 gtgcacccat gaactcctta aagtgtttca gataatgcgg gtcaacatca
1851 tctatgacgt tataccatgc gtcattactg aacacctttg ggctcagatc
1901 aagatggccg cacagataat tgtgaggccc aagacttctg gcccatacgg
1951 tctttcctgt tctactttcc ccttcaatca ctatactaat tggtctatct
2001 ggccgcgcag cggcctcaac gacgttctcc gccgcccatt cttcaagttc
2051 ttctggaact tggtcgaacg aagaagacaa aaaaggagaa acataaggag
2101 ctggaggctc ctgaaaaatc ctctctaaat tactatttaa attatgaaat
2151 tgtaaaacaa aatctttggt agctaactcc cttataaccc taagagcctc
2201 tgccttactt cctgcgttaa gcgctgcggc gtaagcgtca ttggctgtct
2251 gttggcctcc tctggcagat cttccgtcga tctggaattc tccccattcg
2301 agtgtgtctc catccttgtc gatgtaggac ttgacgtcgg agctggattt
2351 agctccctga atgtttggat ggaaatgtgc tgacctattt ggggagacca
2401 agtcgaatag tctctgattt tggcacttga acttcccttc gaactggaga
2451 agcacatgca gatgaggttg gccatcctcg tgaagctctc tgcaaatctt
2501 gatgtatttc ttgtttgatg ctgtacttat tttctgtaat tgctctaggg
2551 cttcctcttt ggttagagaa cattttggga aagttaggaa aaaattcttt
2601 gcatatattt ggaatcgctt gttaggagcc attgacttgg tcaatcggta
2651 ctcagatgct tctctccatt atatcggtac tcaatatata gtgagtacca
2701 aatggcattt tggtaaaaat cccaataatt ttgaaccccc atagcgccca
2751 ccgttctaat att