Sequence of DPV Cotton leaf curl Gezira virus
Cotton leaf curl Gezira virus-[okra:BFA] segment DNA-A, isolate BF:Po:Okra1
ACC No: FN554531
Dated: 2010-04-07 | Length: 2770 | CRC: 653922034
ID FN554531; SV 1; circular; genomic DNA; STD; VRL; 2770 BP.
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AC FN554531;
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DT 25-NOV-2009 (Rel. 102, Created)
DT 07-APR-2010 (Rel. 104, Last updated, Version 2)
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DE Cotton leaf curl Gezira virus-[okra:BFA] segment DNA-A, isolate BF:Po:Okra1
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KW .
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OS Cotton leaf curl Gezira virus-[okra:BFA]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2770
RA Tiendrebeogo F.;
RT ;
RL Submitted (25-SEP-2009) to the EMBL/GenBank/DDBJ databases.
RL Tiendrebeogo F., CRSBAN/UFR/SVT Universite de Ouagadougou,
RL Biochimie-Microbiologie, 03 BP 7131 Ouagadougou 03, Ouagadougou, BURKINA
RL FASO.
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RN [2]
RA Tiendrebeogo F., Lefeuvre P., Hoareau M., Villemot J., Konate G.,
RA Traore A.S., Barro N., Traore V.S., Reynaud B., Traore O., Lett J.M.;
RT "Molecular diversity of cotton leaf curl Gezira virus isolates and their
RT satellite DNAs associated with okra leaf curl disease in Burkina Faso";
RL Virol. J. 7:48-48(2010).
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FH Key Location/Qualifiers
FH
FT source 1. .2770
FT /organism="Cotton leaf curl Gezira virus-[okra:BFA]"
FT /segment="DNA-A"
FT /host="Abelmoshus esculentus"
FT /isolate="BF:Po:Okra1"
FT /mol_type="genomic DNA"
FT /country="Burkina Faso:Po"
FT /collected_by="Edgar V.S. Traore"
FT /collection_date="12-Oct-2008"
FT /db_xref="taxon:679314"
FT CDS 169. .537
FT /gene="V2"
FT /product="movement protein (MP)"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:D1GZB4"
FT /protein_id="CBG22953.1"
FT /translation="MWDPLLNDFPESVHGFRCMLAVKYLQAVRESYDPSTLGYDLLCDL
FT IGVVRRTNYVEATSRYHHFHSRLESASPSELRQPRVVLCTCPHCPRHKQTSGLDEQAHV
FT QKTEDVPNVSQPRCPKGM"
FT CDS 329. .1105
FT /gene="CP"
FT /product="coat protein (CP)"
FT /db_xref="GOA:D1GZ97"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:D1GZ97"
FT /protein_id="CBG22954.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPGLSSARAPTVLVTNKRRAW
FT TNRPTYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTKGVGLTH
FT RTGKRFTIKSIYILGKVWMDDNIKKQNHTNNVMFFLVRDRRPYGNSPLDFGQVFNMFDN
FT EPSTATVKNDLRDHFQVLRKFTATVIGGPSGMKEQALVRRFFRINSQIVYNHQEAGKFE
FT NHTENAILLYMACTHASNPVYATLKIRIYFYDSVSN"
FT CDS complement(1102. .1503)
FT /gene="C3"
FT /product="replication enhancer protein (REn)"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:D1GZB6"
FT /protein_id="CBG22955.1"
FT /translation="MDSRTGELITAHQSENGVLIWTINNPLYFKTIKEFRLTHGNQTMI
FT EVQIRFNYNLRKELGIHKCFMTFRVWTISRPPTGLFLNVFRKQIMKYLYRLGVISINNV
FT IRAVNHVLYDVLQTTVASEFTHNIQIKLY"
FT CDS complement(1247. .1651)
FT /gene="C2"
FT /product="transcription activator protein (TrAP)"
FT /db_xref="GOA:D1GZB7"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:D1GZB7"
FT /protein_id="CBG22956.1"
FT /translation="MRPSSPSQIRCTQVPIKVQHREAKKRAIRRRRIDIPCGCTVYVAF
FT TCRDNGFSHRGTHHCASEREWRTYLDNQQSPVFQNHQGVSANARESNNDRGADKIQLQP
FT QEGIGDSQMFHDLPGLDDLTPSDWSFLKRI"
FT CDS complement(1551. .2639)
FT /gene="C1"
FT /product="replication associated protein (Rep)"
FT /db_xref="GOA:D1GZB8"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:D1GZB8"
FT /protein_id="CBG22957.1"
FT /translation="MAPNKRFQIYAKNYFLTFPKCSLTKEEALEQIQKISTASNKKYIK
FT ICRELHEDGQPHLHVLLQFEGKFKCQNQRLFDLVSPNRSAHFHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKAEALRVIRELAPKDFVLQFH
FT NLNSNLERIFEEPPAPYVCPFLSSSFDQVPEELEEWAAENVVEAAARPDRPISIVIEGE
FT SRTGKTVWARSLGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMGAQKDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNAHLKSWALKNATFITLSNPL
FT YSGTNQSPASGGQEESNQETQD"
FT CDS complement(2180. .2482)
FT /gene="C4"
FT /product="C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:D1GZB9"
FT /protein_id="CBG22958.1"
FT /translation="MANLICMCFSSSKGSSSAKIRDYSTWSPQIGQHISIQTFRELNPA
FT PTSSPTSTRMETHSNGENSRSTEDLPEEANRQPMTLTPQRLTQEVRQRLLGLSGS"
XX
SQ Sequence 2770 BP; 690 A; 632 C; 611 G; 837 T; 0 other;
fn554531 Length: 2770 07-APR-2010 Type: N Check: 7710 ..
1 accggtgggc gcgaaaaaaa aagtggtccc cgccccacgt gaacatgtcg
51 cgcgagtgct gaacatgtcg cgcgatcctg tccctgtcca atcagaacgc
101 gcgctctacg cattataatt tgaaatttga aatataaact tgctccctaa
151 gtttatgccg tcagaactat gtgggatccc ttattgaacg attttccaga
201 atccgttcac ggtttccgtt gtatgctcgc cgtgaaatac cttcaggctg
251 ttcgagagtc ttacgatcct tccactcttg gttacgatct tctttgcgat
301 ctcatcggag ttgtccgccg tactaactat gtcgaagcga ccagcagata
351 tcatcatttc cactcccgcc tcgaaagtgc gtcgccgtct gaacttcgac
401 agccccgggt tgtcctctgc acgtgccccc actgtcctcg tcacaaacaa
451 acgtcgggcc tggacgaaca ggcccacgta cagaaaaccg aggatgtacc
501 gaatgtatcg cagcccagat gtcccaaagg gatgtgaagg tccttgtaag
551 gtccagtctt atgaacagcg tgatgatatc aagcatacgg gtattgtccg
601 atgtgtgtcc gatgttacta agggggttgg tcttacccat cgtactggaa
651 agcgattcac tatcaaatcc atttatattc ttggtaaggt atggatggat
701 gacaacatta agaagcagaa tcacaccaac aatgtcatgt ttttccttgt
751 tcgtgataga agaccgtatg ggaattcccc tttggatttt ggtcaagttt
801 tcaacatgtt tgacaacgaa cctagcactg cgacggtcaa gaatgatctc
851 cgtgatcact ttcaggtatt gaggaagttt actgcaactg ttattggtgg
901 tccttcagga atgaaagaac aagcccttgt tcgtcgtttt tttagaatta
951 atagtcagat tgtgtacaac catcaagagg ctggtaaatt cgagaatcat
1001 acggagaatg ctatattgtt gtatatggca tgtactcatg cctcaaaccc
1051 tgtgtatgct acgttaaaga tacggatcta tttctacgat tcggtatcga
1101 attaatataa ttttatttga atattgtgcg tgaattcact tgccacagtt
1151 gtttgcaata catcgtacaa aacatgattg actgccctaa ttacattgtt
1201 aattgaaatt acgcctaatc tatacaaata tttcataatc tgcttcctaa
1251 atacgtttaa gaaaagacca gtcggagggc gtgagatcgt ccagacccgg
1301 aaggtcatga aacatttgtg aatccccaat tccttcctga ggttgtagtt
1351 gaatcttatc tgcacctcta tcattgtttg attcccgtgc gttagccgaa
1401 actccttgat ggttttgaaa tacaggggat tgttgattgt ccagataagt
1451 acgccattct cgctctgatg cgcagtgatg agttcccctg tgcgagaatc
1501 cattgtctct gcacgtgaag gctacgtata ccgtgcaacc acaagggatg
1551 tcaatcctgc gtctcctgat tgctctcttc ttggcctccc gatgctggac
1601 tttgattggt acctgagtac agcggatttg agagggtgat gaaggtcgca
1651 ttttttaatg cccaggattt gagatgcgcg ttcttctcct cgtctaaata
1701 ctctttatag gaggaattgg gacctggatt gcagaggaag attgttggaa
1751 tgcccccttt aatttgaact ggtttcccgt atttcgtgtt gctttgccag
1801 tccttttgtg cacccatgaa ctctttaaag tgtttcagat aatgcgggtc
1851 aacatcatca atgacgttat accatgcgtc attactgaac acctttgggc
1901 ttagatcaag atggccgcac agataattgt gaggcccaag acttctggcc
1951 catacggtct tccctgttct gctttctcct tcgatgacta tactaatcgg
2001 tctatctggc cgcgcagcgg cctcaacgac gttctccgcc gcccattctt
2051 caagttcttc tggaacttgg tcgaaagaag aagacaaaaa aggacaaaca
2101 taaggagctg gaggctcctc aaaaatcctc tctaaattac tatttaaatt
2151 atgaaattgt aaaacaaaat ctttgggagc taactccctg ataaccctaa
2201 gagcctctgc cttacttcct gcgttaagcg ctgcggcgta agcgtcattg
2251 gctgtctgtt ggcctcctct ggcagatctt ccgtcgatct ggaattctcc
2301 ccattcgagt gtgtctccat ccttgtcgat gtaggacttg acgtcggagc
2351 tggatttagc tccctgaatg tttggatgga aatgtgctga cctatttggg
2401 gagaccaggt cgaatagtct ctgattttgg cacttgaact tcccttcgaa
2451 ctggagaagc acatgcagat gaggttggcc atcctcgtga agctctctgc
2501 agatcttgat atatttcttg tttgatgctg tgcttatttt ctgaatttgc
2551 tctagggctt cctctttggt tagagaacat tttgggaaag tgaggaaata
2601 attctttgca tatatttgaa atctcttgtt aggagccatt gacttggtca
2651 atcggtactc agatgcttct ctccagttta tcggtactca atatatagtg
2701 agtaccaaat ggcattttgg taaaaatccc aacaaatttg aacccccata
2751 gcgcccaccg ttctaatatt