Sequence of DPV Cotton leaf curl Gezira virus
Cotton leaf curl Gezira virus-[okra:BFA] segment DNA-A, isolate BF:Kamboinse:Okra2
ACC No: FN554539
Dated: 2010-04-07 | Length: 2761 | CRC: 1996313679
ID FN554539; SV 1; circular; genomic DNA; STD; VRL; 2761 BP.
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AC FN554539;
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DT 25-NOV-2009 (Rel. 102, Created)
DT 07-APR-2010 (Rel. 104, Last updated, Version 2)
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DE Cotton leaf curl Gezira virus-[okra:BFA] segment DNA-A, isolate
DE BF:Kamboinse:Okra2
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KW .
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OS Cotton leaf curl Gezira virus-[okra:BFA]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2761
RA Tiendrebeogo F.;
RT ;
RL Submitted (25-SEP-2009) to the EMBL/GenBank/DDBJ databases.
RL Tiendrebeogo F., CRSBAN/UFR/SVT Universite de Ouagadougou,
RL Biochimie-Microbiologie, 03 BP 7131 Ouagadougou 03, Ouagadougou, BURKINA
RL FASO.
XX
RN [2]
RA Tiendrebeogo F., Lefeuvre P., Hoareau M., Villemot J., Konate G.,
RA Traore A.S., Barro N., Traore V.S., Reynaud B., Traore O., Lett J.M.;
RT "Molecular diversity of cotton leaf curl Gezira virus isolates and their
RT satellite DNAs associated with okra leaf curl disease in Burkina Faso";
RL Virol. J. 7:48-48(2010).
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FH Key Location/Qualifiers
FH
FT source 1. .2761
FT /organism="Cotton leaf curl Gezira virus-[okra:BFA]"
FT /segment="DNA-A"
FT /host="Abelmoshus esculentus"
FT /isolate="BF:Kamboinse:Okra2"
FT /mol_type="genomic DNA"
FT /country="Burkina Faso:Po"
FT /collected_by="Edgar V.S. Traore"
FT /collection_date="14-Oct-2008"
FT /db_xref="taxon:679314"
FT CDS 161. .529
FT /gene="V2"
FT /product="movement protein (MP)"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:D1GZ42"
FT /protein_id="CBG23001.1"
FT /translation="MWDPLLNDFPESVHGFRCMLAVKYLQAVRESYDPSTLGYDLLSDL
FT IGVVRRTNYVEATSRYHHFHSRLESASPSELRQPRVVLCTCPHCPRHKQTSGLDQQAHV
FT QKTEDVQNVSQPRCPKGM"
FT CDS 321. .1097
FT /gene="CP"
FT /product="coat protein (CP)"
FT /db_xref="GOA:D1GZ43"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:D1GZ43"
FT /protein_id="CBG23002.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPGLSSARAPTVLVTNKRRAW
FT TNRPTYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTKGVGLTH
FT RTGKRFTIKSIYILGKVWMDDNIKKQNHTNNVMFFLVRDRRPYGNSPLDFGQVFNMFDN
FT EPSTATVKNDLRDHFQVLRKFTATVIGGPSGMKEQALVRRFFRINSQIVYNHQEAGKFE
FT NHTENAILLYMACTHASNPVYATLKIRIYFYDSVSN"
FT CDS complement(1094. .1495)
FT /gene="C3"
FT /product="replication enhancer protein (REn)"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:D1GZ68"
FT /protein_id="CBG23003.1"
FT /translation="MDSRTGELITAHQSENGVLIWTINNPLYFKTIKEFRLTHGNQTMI
FT EMQIRFNYNLRKELGIHKCFMNFRVWTISRPPTGLFLNVFRKQIMKYLYRLGVISINNV
FT IRAVNHVLYNVLQTTVASEFTHNIQIKLY"
FT CDS complement(1239. .1643)
FT /gene="C2"
FT /product="transcription activator protein (TrAP)"
FT /db_xref="GOA:D1GZ45"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:D1GZ45"
FT /protein_id="CBG23004.1"
FT /translation="MRPSSPSQIRCTQVPIKVQHREAKKRAIRRRRIDIPCGCTVYVAF
FT TCRDNGFTHRGTHHCASEREWRTYLDNQQSPVFQNHQGVSSNARESNNDRDADKIQLQP
FT QEGIGDSQMFHELPGLDDLTPSDWSFLKRI"
FT CDS complement(1543. .2706)
FT /gene="C1"
FT /product="replication associated protein (Rep)"
FT /db_xref="GOA:D1GZD0"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:D1GZD0"
FT /protein_id="CBG23005.1"
FT /translation="MPFGTHYILSTDILERSCEYRLTKSMAPNKRFQIYAKNFFLTFPK
FT CSLTKEEALEQLQKISTASNKKYIKICRELHEDGQPHLHVLLQFEGKFKCQNQRLFDLV
FT SPNRSTHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAAAL
FT NAGSKAEALRVIRELAPKDFVLQFHNLNSNLERIFEEPPAPYVSPFLSSSFDQVPEKLE
FT EWAAENVVEAAARPDRPISIVIEGDSRTGKTVWARSLGPHNYLCGHLDLSPKVFSNDAW
FT YNVIDDVDPHYLKHFKEFMGAQKDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYL
FT DEEKNAHLKSWALKNATFITLSNPLYSGTNQSPASGGQEESNQETQD"
FT CDS complement(2181. .2474)
FT /gene="C4"
FT /product="C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:D1GZ59"
FT /protein_id="CBG23006.1"
FT /translation="MANLICMCFSSSKGSSSAKIRDYSTWSPQIGQHISIQTFRELNPA
FT PTSSPTSTRMETHSNGENSRSTEDLPEEANRQPMTLTPQRLTQEVRQRLLGL"
XX
SQ Sequence 2761 BP; 689 A; 625 C; 607 G; 840 T; 0 other;
fn554539 Length: 2761 07-APR-2010 Type: N Check: 4173 ..
1 accggtgggc gcgaaaaaaa aagtggaccc cgccccacgt gaacatgtcg
51 cgcgagtgct gaacatgtcg cgcgatcctg tccaatcaga acgcgcgctc
101 tacgcattat aatttaaaat ttgaaatata aacttgctcc ctaagttgtc
151 cgccataact atgtgggatc cgttattgaa cgacttccct gaatccgttc
201 acggtttccg ttgtatgctc gccgtgaaat atctgcaggc tgttcgtgag
251 tcctacgatc cttccactct tggttacgat cttcttagcg atctcatcgg
301 agttgttcgt cgtaccaact atgtcgaagc gaccagcaga tatcatcatt
351 tccactcccg cctcgaaagt gcgtcgccgt ctgaacttcg acagcccagg
401 gttgtcctct gcacgtgccc ccactgtcct cgtcacaaac aaacgtcggg
451 cctggaccaa caggcccacg tacagaaaac cgaggatgta cagaatgtat
501 cgcagcccag atgtcccaaa gggatgtgaa ggtccctgta aggtccagtc
551 ttatgaacag cgtgatgatg tcaagcatac gggtattgtc cgatgtgtgt
601 ccgatgttac taagggggtt ggtcttaccc atcgtactgg aaagcgtttc
651 actatcaaat ccatttatat tcttggtaag gtatggatgg atgacaacat
701 taagaagcag aatcacacca acaatgttat gtttttcctt gttcgtgata
751 gaagaccgta tggaaattcc ccgttggatt ttggtcaagt tttcaacatg
801 tttgacaacg aacctagcac tgctactgtg aagaacgatc tccgtgatca
851 ttttcaggta ttgaggaagt ttactgcaac tgttatcggt ggtccttcag
901 gaatgaaaga acaagccctt gttcgtcgtt tttttaggat taatagtcag
951 attgtgtaca accatcaaga ggctggtaaa ttcgagaatc atacggagaa
1001 tgctatattg ttgtatatgg catgtactca tgcttcaaac cctgtgtatg
1051 ctacgttaaa gatacggatc tacttctacg attcggtatc taattaatat
1101 aattttattt gaatattgtg cgtgaattca cttgccacag ttgtttgcaa
1151 tacattgtac aaaacatgat tgactgccct aattacattg ttaattgaaa
1201 ttacgcctaa tctatacaaa tatttcataa tctgcttcct aaatacgttt
1251 aagaaaagac cagtcggagg gcgtgagatc gtccagaccc ggaagttcat
1301 gaaacatttg tgaatcccca attccttcct gaggttgtag ttgaatctta
1351 tctgcatctc tatcattgtt tgattcccgt gcgttagacg aaactccttg
1401 atggttttga aatacagggg attgttgatt gtccagataa gtacgccatt
1451 ctcgctctga tgcgcagtga tgagttcccc tgtgcgtgaa tccattgtct
1501 ctgcacgtga aggctacgta taccgtgcaa ccacaaggga tgtcaatcct
1551 gcgtctcctg attgctctct tcttggcctc ccgatgctgg actttgattg
1601 gtacctgagt acagcggatt tgagagggtg atgaaggtcg cattctttaa
1651 tgcccaggat ttgagatgcg cgtttttctc ctcgtctaaa tactctttat
1701 atgaggaatt ggggcctgga ttgcagagga agattgttgg gatgcctcct
1751 ttaatttgaa ctggtttccc gtattttgtg ttgctttgcc agtccttttg
1801 tgcccccatg aattccttaa agtgtttcag ataatgcggg tcaacatcat
1851 cgattacgtt ataccatgcg tcattactga acacctttgg gcttagatca
1901 agatggccgc acagataatt gtgaggccca agacttctgg cccatacggt
1951 cttccctgtt ctgctatccc cttcaatcac tatactaatc ggtctatctg
2001 gccgcgcagc ggcctccacg acgttctccg ccgcccattc ttcaagtttt
2051 tctggaactt ggtcgaaaga agaagacaaa aaaggagaaa cataaggagc
2101 tggaggctcc tcaaaaatcc tctctaaatt actatttaaa ttatgaaatt
2151 gtaaaacaaa atctttggga gctaactccc ttataaccct aagagcctct
2201 gccttacttc ctgcgttaag cgctgcggcg taagcgtcat tggctgtctg
2251 ttggcctcct ctggcagatc ttccgtcgat ctggaattct ccccattcga
2301 gtgtgtctcc atccttgtcg atgtaggact tgacgtcgga gctggattta
2351 gctccctgaa tgtttggatg gaaatgtgtt gacctatttg gggagaccag
2401 gtcgaatagt ctctgatttt ggcacttgaa cttcccttcg aactggagaa
2451 gcacatgcag atgaggttgg ccatcctcgt gaagctctct gcagatcttg
2501 atgtatttct tgtttgatgc tgtacttatt ttctgtaatt gctctagggc
2551 ttcctctttg gttagagaac attttgggaa agttaggaaa aaattcttgg
2601 catatatttg gaatctcttg ttaggagcca ttgacttggt caatcggtac
2651 tcacagcttc tctccagtat atcggtactc aatatatagt gagtaccaaa
2701 tggcattttg gtaaaaatcc caacaaattt gaaaccccat agcgcccacc
2751 gttctaatat t