Sequence of DPV Pepper yellow vein Mali virus
Pepper yellow vein Mali virus, complete genome, isolate BF:Ban:Hpe1:09
ACC No: FN555173
Dated: 2009-12-06 | Length: 2786 | CRC: 1584257297
ID FN555173; SV 1; circular; genomic DNA; STD; VRL; 2786 BP.
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AC FN555173;
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DT 06-DEC-2009 (Rel. 103, Created)
DT 06-DEC-2009 (Rel. 103, Last updated, Version 1)
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DE Pepper yellow vein Mali virus, complete genome, isolate BF:Ban:Hpe1:09
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KW complete genome.
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OS Pepper yellow vein Mali virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2786
RA Tiendrebeogo F.;
RT ;
RL Submitted (06-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL Tiendrebeogo F., Biochimie-Microbiologie, CRSBAN/UFR/SVT Universite de
RL Ouagadougou, 03 BP 7131 Ouagadougou 03, Ouagadougou, BURKINA FASO.
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RN [2]
RA Tiendrebeogo F., Lefeuvre P., Hoareau M., Traore E.S., Barro N.,
RA Traore A.S., Konate G., Lett J.M., Traore O.;
RT "Complete genomic sequences of Pepper yellow vein Mali virus isolates
RT infecting Capsicum sp. in Burkina Faso";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .2786
FT /organism="Pepper yellow vein Mali virus"
FT /host="Capsicum frutescens"
FT /strain="Mali"
FT /isolate="BF:Ban:Hpe2:09"
FT /mol_type="genomic DNA"
FT /country="Burkina Faso:Banfora"
FT /collected_by="Fidele Tiendrebeogo and Oumar Traore"
FT /collection_date="Apr-2009"
FT /db_xref="taxon:260378"
FT CDS 139. .489
FT /gene="V2"
FT /product="movement protein (MP)"
FT /protein_id="CBG76616.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKFLQAVEETYEPNTLGHDLIRDL
FT ISVIRARDYVEATRRYNHFHARLEGSSKAELRQPIHQPCCCPHCPRHKQASIMDLPAHV
FT SKAQDVQNVQKP"
FT CDS 299. .1075
FT /gene="V1"
FT /product="coat protein (CP)"
FT /protein_id="CBG76617.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTSRAAVPIAQGINRRRSW
FT TYRPMYRKPRMYRMFRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGPGITH
FT RVGKRFCIKSMYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPQDFGQVFNMFDN
FT EPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALVKRFFRVNTHVVYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT CDS complement(1072. .1476)
FT /gene="C3"
FT /product="replication enhancer protein (REn)"
FT /protein_id="CBG76618.1"
FT /translation="MDSRTGEHITALQAKNGVFIWEINNPLYFTITNHEIRPFNMNQDI
FT LTLQIRFNHNLRRALGIHKCFLNFKVWTTLRPQTGLFLRVFRFQVWKYLNNLGVISINN
FT VIRAVDHVLYVVLVNTISVMETHEIKFNLY"
FT CDS complement(1217. .1624)
FT /gene="C2"
FT /product="transcription activator protein (TrAP)"
FT /protein_id="CBG76619.1"
FT /translation="MQPSSPSTGHSTQVPIKVIHRRAKTKAIRRKRIDLDCGCSYYLHI
FT DCINHGFTHRGTHHCSSSKEWRFYMGDKQSPLFHDNKPRDQAIQHEPRHPHTPNTIQSQ
FT PQEGTGDSQMFSQLQGLDDLTASDWSFLKGI"
FT CDS complement(1548. .2612)
FT /gene="C1"
FT /product="replication associated protein (Rep)"
FT /protein_id="CBG76620.1"
FT /translation="MAPPKRFKISSKNYFLTFPKCSLTKEEALEQLLNLSTPTNTKFIK
FT VCRELHTNGEPHLHVLMQFEGKYQCTNNRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYI
FT DKDGDTIEWGVFQIDGRSARGGCRNANDAAAEALNADSAEAAMAIIREKLPKEFIFQYH
FT NLKTNLDRIFQEPPAPYVSPFLSSSFTQVPEELEEWVSENVMGAAARPWRPNSIVVEGD
FT SRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHWKEFFGAQRDW
FT QSNTKYGKPIQIKGGIPSIFLCNPGPTSSYKEFLEEAKNYALKSWTLKNATFVTLDRPL
FT YSSTNQGHPPQSQD"
FT CDS complement(2198. .2455)
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="CBG76621.1"
FT /translation="MGNLISTCLCSSRGNTSARITDSSTWYPQPGQHISIRTFRELNQA
FT PTSSPTSTRTETPLNGGSSRSTAEVLGEAAEMLTTQQQRP"
XX
SQ Sequence 2786 BP; 716 A; 574 C; 655 G; 841 T; 0 other;
fn555173 Length: 2786 06-DEC-2009 Type: N Check: 1714 ..
1 accggatggc cgcgcccccg aaaaagatat gggccccacg cactaatatg
51 tgtcgaccaa tcatatcgca gcctgaaagg caagatattt gtttttgtct
101 tttatatact tgggcaccaa gtatgggcct tgtccatcat gtgggatcca
151 cttttgaacg agtttcccga atccgttcac ggatttcgtt gtatgctcgc
201 cattaaattt ttgcaggccg tggaggaaac ttacgagccc aatactttgg
251 gccacgattt aattagggat cttattagtg ttattagggc tcgagactat
301 gtcgaagcga cccggcgata taatcatttc cacgcccgtc tcgaaggttc
351 gtcgaaggct gaacttcgac agcccataca ccagccgtgc tgctgtcccc
401 attgcccaag gcataaacag gcgtcgatca tggacctacc ggcccatgta
451 tcgaaagccc aggatgtaca gaatgttcag aagccctgat gtccctcgtg
501 gttgtgaggg tccgtgtaag gttcagtcgt acgaacagag ggatgatgtt
551 aagcacactg gtattgttcg ctgcgttagt gatgtcacac gtggcccggg
601 tattactcat cgtgtaggaa agagattttg tattaagtct atgtatattc
651 tgggtaagat ctggatggat gaaaatatca agaagcagaa tcacaccaac
701 caggttatgt tttttttagt tcgtgataga aggccctatg gaaccagccc
751 acaggatttt gggcaggttt ttaacatgtt cgataatgag cccagtactg
801 ctacggtgaa gaatgatttg cgtgatcgtt atcaagtcct caggaaattc
851 catgctacgg tagttggtgg accctctggg atgaaagagc aggctttagt
901 aaagaggttt tttagggtta acacgcacgt cgtgtacaat catcaggaag
951 cagctaaata tgagaatcat actgagaatg ctttgttgtt gtatatggca
1001 tgtactcatg cctctaaccc tgtgtatgct actcttaaga tacgcatcta
1051 tttttatgat gccgttacga attaataaag attgaatttt atttcatgag
1101 tttccataac ggaaatcgta tttacaagta caacatataa cacatgatca
1151 actgctctaa ttacattatt gatagaaatt acacctaaat tattcaaata
1201 cttccaaact tggaacctaa atacccttaa gaaaagacca gtctgaggcc
1251 gtaaggtcgt ccagaccttg aagttgagaa aacatttgtg aatccccagt
1301 gccctcctga ggttgtgatt gaatcgtatt tggagtgtga ggatgtcttg
1351 gttcatgttg aatggcctga tctcgtggtt tgttatcgtg aaatagaggg
1401 gattgtttat ctcccatata aaaacgccat tctttgcttg aagagcagtg
1451 atgtgttccc ctgtgcgtga atccatggtt gatgcagtcg atgtggaggt
1501 agtatgaaca gccgcagtcg aggtctattc gcttacggcg aatggcttta
1551 gtcttggctc tgcggtggat gaccttgatt ggtacttgag tagagtggcc
1601 tgtcgagggt gacgaaggtt gcattcttta gtgtccagct cttgagtgcg
1651 taattcttcg cctcttctag gaattcttta tatgaggatg ttgggcctgg
1701 attgcagagg aagatagagg gaattccgcc tttaatttga attggcttcc
1751 cgtactttgt gttgctttgc cagtccctct gggccccaaa gaattctttc
1801 cagtgcttta gatagtgcgg gtcgacgtca tcaatgacgt tataccaagc
1851 atcattagaa taaacctttg gacttaagtc taaatgacca cataagtaat
1901 tatgtggccc taatgaccta gcccaaacag ttttgccggt acgactatcg
1951 ccctctacta caatactatt aggcctccac ggccgcgcag cggcacccat
2001 gacattctca gacacccact cttcaagttc ttctggaact tgagtaaaag
2051 aagacgaaag aaaaggagaa acataaggag ctgggggctc ctgaaaaatc
2101 ctatctaaat tagtttttaa attatgatat tgaaaaataa attctttagg
2151 gagtttctcc ctaataatag ccatagcggc ttcagcggaa tctgcattta
2201 aggcctctgc tgctgcgtcg ttagcatttc tgcagcctcc cctagcactt
2251 ctgccgtcga tctggaagac cccccattca atggtgtctc cgtccttgtc
2301 gatgtaggac ttgacgtcgg agcttgattt agctccctga atgttcggat
2351 ggaaatgtgt tgacctggtt ggggatacca ggtcgaagaa tctgttattc
2401 gtgcactggt atttcccctc gaactgcata agcacgtgga gatgaggttc
2451 cccatttgtg tgcaactctc tgcagacttt gatgaatttt gtatttgttg
2501 gggttgacag atttagaagt tgctctaacg cttcctcttt agttagggag
2551 cattttggga aagtgaggaa ataatttttg gaacttattt taaaacgctt
2601 tggaggagcc atttggtcaa tgtaccccaa ttgaccgctc ttggcatttg
2651 gtgcctacaa ttggggtaat ggggtacaat atatactcgt acccctaatg
2701 gcattatggt aatttggtaa agctcttttc actttaattc gaaatttgaa
2751 ttccgaattt tttttagcgg ccatccgtat aatatt