Sequence of DPV Cucumber mosaic virus

Cucumber mosaic virus partial 2a gene and 2b gene for gene silencing suppressor, genomic RNA, isolate KS44

ACC No: FN555199

Dated: 2009-10-08 | Length: 741 | CRC: 275286273

                
ID   FN555199; SV 1; linear; genomic RNA; STD; VRL; 741 BP.
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AC   FN555199;
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DT   08-OCT-2009 (Rel. 102, Created)
DT   08-OCT-2009 (Rel. 102, Last updated, Version 1)
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DE   Cucumber mosaic virus partial 2a gene and 2b gene for gene silencing
DE   suppressor, genomic RNA, isolate KS44
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KW   .
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OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Cucumovirus.
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RN   [1]
RP   1-741
RA   Willingmann P.;
RT   ;
RL   Submitted (06-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL   Willingmann P., Biozentrum Klein-Flottbek und Botanischer Garten
RL   Universitat, Phytomedizin, Ohnhorststr. 18, 22609 Hamburg, GERMANY.
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RN   [2]
RA   Zhang D., Tan X., Willingmann P., Adam G., Heinze C.;
RT   "The systemic infection of a resistant Capsicum sp. line by Cucumber mosaic
RT   virus is based on a 2b containing segment of RNA2 and interactions between
RT   viral components from RNA 1 and/or RNA 3";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .741
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA 2"
FT                   /host="Capsicum sp."
FT                   /strain="CMV"
FT                   /isolate="KS44"
FT                   /serotype="Ib"
FT                   /mol_type="genomic RNA"
FT                   /country="Thailand"
FT                   /collection_date="1991"
FT                   /db_xref="taxon:12305"
FT   CDS             <1. .534
FT                   /codon_start=1
FT                   /gene="2a"
FT                   /product="2a protein"
FT                   /note="polymerase"
FT                   /protein_id="CBG76801.1"
FT                   /translation="DEFLFAHFMSLVDRLKFLDRMTQSCIDQLSLFFELKYRKSGAEAA
FT                   LILGAFKKYTANFQSYKELYYSDRRQCELINSFSCAELRIERSISTKQRKKKDGIERRR
FT                   NDKRRTPAGSHDGGEETKTKVSQEESTGTRSQKSQRESAFKSQAIPIFTVLSDRWFGTD
FT                   RDVPPRECGGIVRV"
FT   CDS             293. .628
FT                   /gene="2b"
FT                   /product="gene silencing suppressor"
FT                   /protein_id="CBG76802.1"
FT                   /translation="MELNEGAMTNVELQLARMMEVRRQRRKSHKKNRRERGHKSPSERA
FT                   RSNLRLFRFLPFYQIDGSELIEMYHHASVVELSESEAPRFTLPAEEDHDFDDTDWFAGN
FT                   EWAEGAF"
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SQ   Sequence 741 BP; 200 A; 152 C; 188 G; 201 T; 0 other;

fn555199 Length: 741  08-OCT-2009  Type: N  Check: 7742  ..

       1  gatgaattcc tgtttgctca cttcatgagc ttagtcgatc gattgaagtt
      51  tctggataga atgactcagt cctgcatcga tcaactttca ctctttttcg
     101  agttgaaata taggaagtct ggggctgagg ctgctttaat attaggcgcc
     151  tttaagaaat ataccgctaa tttccaatcc tataaagaac tctactattc
     201  agatcgtcgt cagtgcgaat tgatcaattc gtttagttgt gcagagttga
     251  ggattgagcg ttcgatttcc actaaacagc gaaagaagaa agatggaatt
     301  gaacgaaggc gcaatgacaa acgtcgaact ccagctggct cgcatgatgg
     351  aggtgaggag acaaagacga aagtctcaca agaagaatcg acgggaacga
     401  ggtcacaaaa gtcccagcga gagagcgcgt tcaaatctca ggctattccg
     451  atttttaccg ttttatcaga tagatggttc ggaactgata gagatgtacc
     501  accacgcgag tgtggtggaa ttgtccgagt ctgaggctcc tcggtttacg
     551  ttaccagcgg aagaagacca tgattttgac gacacagatt ggttcgctgg
     601  taatgaatgg gcggaaggtg cgttttgaat ctccccttcc tttttctccc
     651  tccagttttc tgaggcggga gctgagttgg cagtactgct acaaactgtc
     701  tgaagtcact aaacgctatg cggtgaacgg gttgtccatc c