Sequence of DPV Cucumber mosaic virus

Cucumber mosaic virus partial 2a gene and 2b gene for gene silencing suppressor, genomic RNA, isolate P3613

ACC No: FN555201

Dated: 2009-10-08 | Length: 741 | CRC: -579141732

                
ID   FN555201; SV 1; linear; genomic RNA; STD; VRL; 741 BP.
XX
AC   FN555201;
XX
DT   08-OCT-2009 (Rel. 102, Created)
DT   08-OCT-2009 (Rel. 102, Last updated, Version 1)
XX
DE   Cucumber mosaic virus partial 2a gene and 2b gene for gene silencing
DE   suppressor, genomic RNA, isolate P3613
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Cucumovirus.
XX
RN   [1]
RP   1-741
RA   Willingmann P.;
RT   ;
RL   Submitted (06-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL   Willingmann P., Biozentrum Klein-Flottbek und Botanischer Garten
RL   Universitat, Phytomedizin, Ohnhorststr. 18, 22609 Hamburg, GERMANY.
XX
RN   [2]
RA   Zhang D., Tan X., Willingmann P., Adam G., Heinze C.;
RT   "The systemic infection of a resistant Capsicum sp. line by Cucumber mosaic
RT   virus is based on a 2b containing segment of RNA2 and interactions between
RT   viral components from RNA 1 and/or RNA 3";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .741
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA 2"
FT                   /host="Capsicum sp."
FT                   /strain="CMV"
FT                   /isolate="P3613"
FT                   /serotype="Ib"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /db_xref="taxon:12305"
FT   CDS             <1. .537
FT                   /codon_start=1
FT                   /gene="2a"
FT                   /product="2a protein"
FT                   /note="polymerase"
FT                   /protein_id="CBG76805.1"
FT                   /translation="DEFLFAHFMSFVDRLKFLDRMTQSCIDQLSLFFELKYRKSGAEAA
FT                   LMLGAFKKYTANFQSYKELYYSDRRQCELINSFSCVELRIERSSFIKQRKKKKDGIERR
FT                   RNDKRRTPTSPHGGGEETETKISQEESTGTMSQKSQREGAFKSQTVPLPTVLSSRWFGT
FT                   DRDVPPRERGGIVRV"
FT   CDS             296. .631
FT                   /gene="2b"
FT                   /product="gene silencing suppressor"
FT                   /protein_id="CBG76806.1"
FT                   /translation="MELNAGAMTSVELQLARMVEAKRQRRRSHKKNRRERCHKSPSERA
FT                   RSNLRLFRFLPFFQVDGLELIEMYRHASVAELSESEAPCFPLPAEDDHDFDDTDWFAGN
FT                   EWAEGAF"
XX
SQ   Sequence 741 BP; 189 A; 158 C; 195 G; 199 T; 0 other;

fn555201 Length: 741  08-OCT-2009  Type: N  Check: 7328  ..

       1  gatgaattcc tgtttgctca cttcatgagc tttgttgatc gattgaagtt
      51  tttggatcga atgactcagt cttgtatcga tcagctttca ctcttcttcg
     101  agttgaaata caggaagtct ggggcggagg ctgccttaat gttaggcgcc
     151  tttaagaaat ataccgctaa ttttcagtcc tacaaagaac tctattattc
     201  agatcgtcgt cagtgcgaat tgatcaattc gtttagttgc gtagagttga
     251  ggattgagcg ttcgagtttc attaagcagc gaaagaagaa gaaagatgga
     301  attgaacgca ggcgcaatga caagcgtcga actccaacta gcccgcatgg
     351  tggaggcgaa gagacagaga cgaagatctc acaagaagaa tcgacgggaa
     401  cgatgtcaca aaagtcccag cgagagggcg cgttcaaatc tcagactgtt
     451  ccgcttccta ccgttctttc aagtagatgg tttggaactg atagagatgt
     501  accgccacgc gagcgtggcg gaattgtccg agtctgaggc cccttgtttt
     551  ccgttgccag cggaagatga ccatgatttc gacgatacag attggttcgc
     601  tggtaacgag tgggcggaag gagcattctg aacccctcct tcctttctcc
     651  cccagttttc tgaggcggga gctgagttgg cagtattgct ataaactgtc
     701  tgaagtcact aaacgtttta cggtgaacgg gttgtccatc c