Sequence of DPV Cucumber mosaic virus

Cucumber mosaic virus partial 2a gene and 2b gene for gene silencing suppressor, genomic RNA, isolate PV0420

ACC No: FN555203

Dated: 2009-10-08 | Length: 719 | CRC: 2051188423

                
ID   FN555203; SV 1; linear; genomic RNA; STD; VRL; 719 BP.
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AC   FN555203;
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DT   08-OCT-2009 (Rel. 102, Created)
DT   08-OCT-2009 (Rel. 102, Last updated, Version 1)
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DE   Cucumber mosaic virus partial 2a gene and 2b gene for gene silencing
DE   suppressor, genomic RNA, isolate PV0420
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KW   .
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OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Cucumovirus.
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RN   [1]
RP   1-719
RA   Willingmann P.;
RT   ;
RL   Submitted (06-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL   Willingmann P., Biozentrum Klein-Flottbek und Botanischer Garten
RL   Universitat, Phytomedizin, Ohnhorststr. 18, 22609 Hamburg, GERMANY.
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RN   [2]
RA   Zhang D., Tan X., Willingmann P., Adam G., Heinze C.;
RT   "The systemic infection of a resistant Capsicum sp. line by Cucumber mosaic
RT   virus is based on a 2b containing segment of RNA2 and interactions between
RT   viral components from RNA 1 and/or RNA 3";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .719
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA 2"
FT                   /host="Capsicum sp."
FT                   /strain="CMV"
FT                   /isolate="PV0420"
FT                   /serotype="II"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /db_xref="taxon:12305"
FT   CDS             <1. .489
FT                   /codon_start=1
FT                   /gene="2a"
FT                   /product="2a protein"
FT                   /note="polymerase"
FT                   /protein_id="CBG76809.1"
FT                   /translation="DEFLFAHFMSFVDRLKFMGRMSQSCIDQLSIFFELKYKKSGNEAA
FT                   QVLGAFKKYTANFNAYKELYYSDRQQCDLVNTFCVSEFQVIRLTIVKKKKNGCVDSSGV
FT                   DRRPPPSPFAGGETSKTKVSRQKPASEGLQKSQRESAIYSETFPDVTIPRSRSRGLVS"
FT   CDS             287. .589
FT                   /gene="2b"
FT                   /product="gene silencing suppressor"
FT                   /protein_id="CBG76810.1"
FT                   /translation="MDVLTVVVSTADLHLAHLQEVKRRRRRSHVRNRRARGYKSPSERA
FT                   RSIARLFQMLPFHGVDPADWFPDVVRSPSVTSLVSYESFDDTDWFAGNEWAEGSF"
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SQ   Sequence 719 BP; 171 A; 155 C; 179 G; 214 T; 0 other;

fn555203 Length: 719  08-OCT-2009  Type: N  Check: 2683  ..

       1  gatgaattcc tgtttgctca ctttatgagt tttgttgaca ggctgaagtt
      51  tatgggcagg atgtcgcaat cctgtattga tcaattgtcc attttcttcg
     101  agttgaaata caagaagtcc gggaacgaag ccgcccaagt tttgggcgcg
     151  tttaagaagt acaccgctaa ttttaacgcc tataaggagc tttattactc
     201  tgaccgtcaa caatgtgact tggtcaatac gttttgtgta tctgagttcc
     251  aggtgattcg tctcactatc gttaagaaga agaagaatgg atgtgttgac
     301  agtagtggtg tcgaccgccg acctccacct agcccatttg caggaggtga
     351  aacgtcgaag acgaaggtct cacgtcagaa accggcgagc gaggggttac
     401  aaaagtccca gcgagagagc gcgatctata gcgagacttt tccagatgtt
     451  accattccac ggagtagatc ccgcggattg gtttcctgat gtcgttcgct
     501  ctccgtccgt taccagcctt gtttcttatg aatcttttga tgatactgat
     551  tggtttgctg gtaacgaatg ggccgaaggg tcgttttgat ttccgaccct
     601  tcgtcgtccg aagacgttaa actacactct ctttattgcg agtgctgagt
     651  tggtagtttg ctctaaacta tctgaagtcg ctaaatccat tactggttgc
     701  gaacgggttg tccatccaa