Sequence of DPV Chiltepin yellow mosaic virus
Chiltepin yellow mosaic virus, complete genome, isolate 20.5
ACC No: FN563123
Dated: 2010-05-09 | Length: 6517 | CRC: -123810030
ID FN563123; SV 1; linear; genomic RNA; STD; VRL; 6517 BP.
XX
AC FN563123;
XX
DT 03-MAY-2010 (Rel. 104, Created)
DT 09-MAY-2010 (Rel. 104, Last updated, Version 2)
XX
DE Chiltepin yellow mosaic virus, complete genome, isolate 20.5
XX
KW complete genome.
XX
OS Chiltepin yellow mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Tymoviridae; Tymovirus; unclassified Tymovirus.
XX
RN [1]
RP 1-6517
RA Pagan I.;
RT ;
RL Submitted (30-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL Pagan I., Centro de Biotecnologia y Genomica de Plantas, Biotecnologia,
RL Campus Montegancedo. Autopista M40 Km38, Pozuelo de Alarcon, 28223, SPAIN.
XX
RN [2]
RA Pagan I., Betancourt M., de Miguel J., Pineiro D., Fraile A.,
RA Garcia-Arenal F.;
RT "Genomic and biological characterization of chiltep.n yellow mosaic virus,
RT a new tymovirus infecting Capsicum annuum var. aviculare in Mexico";
RL Arch. Virol. 155(5):675-684(2010).
XX
FH Key Location/Qualifiers
FH
FT source 1. .6517
FT /organism="Chiltepin yellow mosaic virus"
FT /isolate="20.5"
FT /mol_type="genomic RNA"
FT /country="Mexico:Tula"
FT /isolation_source="host leaf"
FT /collection_date="2001"
FT /db_xref="taxon:688701"
FT CDS 139. .2211
FT /transl_table=1
FT /gene="OP"
FT /product="overlapping protein/movement protein"
FT /function="Within-host movement"
FT /protein_id="CBH31038.1"
FT /translation="MSNGFPTSPRRPILHHSQRCLSESSSEFRRPTSPRLSPALPLDHP
FT KGTPSLPHLLRHPSLRIRNHPPPPRCPQNHRNLPSLQPLEPPRLHSLLRHVHETLKVPK
FT TSSHQPKLPRAHQLPSHPRRHRSLPHHLHHSSNQRLRLHARRFDVFSTIPDRRLVSQQS
FT KSGNSVLQSHLPSRVPLHRSVSLPRDLHLQDIGSNTPLCAGISSRRLIQSAPSSPVLAK
FT SELHISSRDPTLSHQAGILGPCPLPSNPKRSPPSGLNPKKSSPTPRTRSSNSTGSSAAK
FT HCSFIQPITNNRESGILPNSRLLGTSSSHLSPTTLETPSGAQCGLQRPLHLHKGCSHPK
FT DIRPSRFCSHPKQQARILLGDAKRLGQSTNLRAPQLPPPPSGMLPLFLQPNRPTQTSFR
FT STLASISFGSHPIPFHISTTPPLIQFQIPSPNPKATFCISQEVCIPTFAHLLPPKRNTT
FT PISTDAQNPIVPKASDLSLAAEVSSNSASCEPSTPSSNPASIRVSNGNNHGTHSPPPNS
FT SPSAKSDTGLSPTDNSHPAGPDSSNPARQLPSSPSSIKVSTPMESTKLSTEFSPSRIPA
FT HWRPLQSFEDSIKVLTSMESSKFPSDFHSTLSPLSTSSSSPSSFLSASSPPRFPCYPTG
FT YNPEIECCLSGDSCPLSTIEFEHNSTRQRALERLKTFHLDCPYGWTECDSPYSSP"
FT CDS 146. .5791
FT /transl_table=1
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /function="replication"
FT /note="contains methyltransferase, papain-like protease,
FT helicase and polymerase domains, and tymonbox"
FT /protein_id="CBH31039.1"
FT /translation="MAFQLALDALSSTTHRDASLNPVLNSAVQPLQDSLQHYPWIIPKE
FT HLPFLISSGIPVSGFGTTPHPHAVHKTIETFLLFNHWSHLASTPSSVMFMKPSKFRKLP
FT AINPNFQELINYRLTPADTVRYPTTSTTLPTNDCVFMHDALMYFQPSQIVDLFLNSPNL
FT ETLYCSLICPAESHFTDLSLYPEIYTYKISGQTLHYVPESHHAGSYNQPLQALSWLKVN
FT SISHPEILLSVTKLESWGPVHSLLIQRGLPPLASIPRRALPPPGRAPQTPQDHLLQNTA
FT ALFNQSQTTESLVSFQIPDCLELPQATFLRQPLRHRLVPSAVYNALFTYTRAVRTLRTS
FT DPAGFVRTQSNKPEYSWVTPSAWDNLQTFALLNSPHRPQVCYHFFSSPIDRLKLHFGQH
FT WRAYLLALTPFLSTSPLLLPLFNFKFPLPIPKLLSVFRKRFASPLLLTSYLPNEIQLPF
FT PLMPKIQLFPKHQTCHLLQRFHRTLHRANLLPLPPILPQFEFRTATIMELIPRPRIVLP
FT LLSLILASPPLITHILQAQTPQTLHDNYHLHLHPSKFLLQWNLQSFQLNSHQAEFQHTG
FT GRYKALKIPSKFLLQWNLQSFQVTSTQPFLPYQLQAPPPAASSLPPARPVFHATPPVTT
FT QRSNAASPATHVPCQPSSSSTTPQDREPSNASKHSIWTVPMDGPNVILPTPAPEPTPQN
FT TTSSPPLDNNHPIHTQQPLQSTVLPSGALTFDVASTPSTSLNSTPTPAVAKSSLADDPT
FT AVGLAAPFSKLFPAEYFPLSAEFLTRSRHVPSSNLPLAKNLTAYFLPSLTWTSIPISTL
FT WETLQSKNPRILFFKILKVENLGLSTDILTTLCYFFHCQCALHTPQGVFHYGIMTSSRK
FT YRHLLRSRAPTPFLDHSTHYCLSSSLQPHPGATGASSATFQVQIDAFLPFTQAHSHTSS
FT LHHAKNLISNMKNGFDGILSTIAHSNSGPSPRQRMITLDSLVDVAAPRTIPVIHIAGFA
FT GCGKTLPVQHLLKTKHFHDFRVSCPTNELRSEWKRDMQPTAENLWRFSTWESSLLKTSS
FT VLVIDEIYKLPRGYLDLSMIADPSLRLVIILGDPLQGEYHSTSPHSSNHFLPSEIHRFK
FT SYIDCYCFWSYRIPTSFARMFGVSSFSKEPGFVRTLTTHPPNGKNLTNAINTALTLQEM
FT GHHAITISSSQGTTFQEAHTILLDRHTNRLSPNNCLVALTRSKVGVYFVGNLHLASNDF
FT GTNYLFSQFLAGKDVDLHQLFPYVMPYLPKLHEPIKSRSIRFVAGLINPSINFSILPRL
FT SRPIHLPPHIPVDYKKDFLISNPIVAGNKIDERLDTHYLPPTRLPLHFDLPPGFPQPAT
FT FSESAPQPTNPLSLGLFGFPFETLAAFFLPAHDPEIKEIIYSDQKSNPSFQLTIRKSRK
FT LFTPIKRAINFLFLTVLLSFPANPPLCWLQSILLLVIQHFFLLPYKKRLRFRASSKPYS
FT IGPTDVILGQHLYSSWCSAYSRPTSQVLPFNPELFAECINLNEYAQLSSKTRSTLVANA
FT QRSDPDWRYTSVRIFAKAQHKVNDSSIFSNWKACQTLALMHDYIILVLGPVKKYQRIYD
FT QRERPPQIYYHCGHTPTQLSQWCSQHLRSPVATTNDYTAFDQSQHGEAVVFECLKMNRL
FT SIPPHLISLHSHLKCSIETQFGPLTCMRLTGEPGTYDDNSDYNLAVIYSQYAIKSEAIM
FT ISGDDSVIDGVPPINPNWSKIGPLLHLRFKTEKVRHPLFCGYYVTPVGACRDPKALFAK
FT LMICIDDGTFQDKVLSYLSEFSIGHSLGDVLLQHLHPDLLIYQTAVHDCFCRRCSPSQK
FT MILSLDPIPESKLLLLLRKVKWASSQFFSQLPQKARDFLAAKSQLSSFHQDPKVSQLES
FT ELLLSLN"
FT CDS 5795. .6361
FT /transl_table=1
FT /gene="CP"
FT /product="coat protein"
FT /function="structural protein"
FT /protein_id="CBH31040.1"
FT /translation="MEDQTASRAKQPSIPSPGFTLPKPDTQLSSAIELPFQFQATTFGA
FT AETAAQVSLASSTPITKLASLYRHAQLVECHAVITPTALAISNPLTINIVWVSDNSTAK
FT PTEILNVYGGSSFTFGGAITTTKPIILPLPMNSINPMLKDSVLYTDTPKLLAYSAAPSS
FT PTKQPTATIQIYGKLRLSSPLLQAS"
XX
SQ Sequence 6517 BP; 1589 A; 2199 C; 988 G; 1741 T; 0 other;
fn563123 Length: 6517 09-MAY-2010 Type: N Check: 1131 ..
1 gtaatttatt cccagtctca aaaccctctt ttgagccttg aacgttttct
51 tttcctttcc gcacctccgc ttctccccgt ctccggccag aagcttttct
101 ccaaccgatc cttcactaac tgtcgccact cctaattaat gtccaatggc
151 tttccaacta gccctcgacg ccctatcctc caccactcac agagatgcct
201 ctctgaatcc agttctgaat tccgccgtcc aacctctcca agactctctc
251 cagcactacc cctggatcat cccaaaggaa caccttccct tcctcatctc
301 ctccggcatc ccagtctccg gattcggaac caccccccac ccccacgctg
351 tccacaaaac catcgaaacc ttccttctct tcaaccactg gagccacctc
401 gcctccactc cctcctccgt catgttcatg aaaccctcaa agttccgaaa
451 acttccagcc atcaacccaa acttccaaga gctcatcaac taccgtctca
501 cccccgccga caccgttcgc taccccacca cctccaccac tcttccaacc
551 aacgattgcg tcttcatgca cgacgctttg atgtattttc aaccatccca
601 gatcgtcgac ttgtttctca acagtccaaa tctggaaact ctgtattgca
651 gtctcatctg cccagcagag tcccacttca ccgatctgtc tctctacccc
701 gagatctaca cctacaagat atcgggtcaa acactccact atgtgccgga
751 atctcatcac gccggctcat acaatcagcc ccttcaagcc ctgtcttggc
801 taaaagtgaa ctccatatct catccagaga tcctactctc agtcaccaag
851 ctggaatcct ggggccctgt ccactccctt ctaatccaaa gaggtctccc
901 ccctctggcc tcaatcccaa gaagagctct cccacccccc ggacgcgctc
951 ctcaaactcc acaggatcat ctgctgcaaa acactgcagc tttattcaac
1001 caatcacaaa caaccgagag tctggtatcc ttccaaattc cagattgctt
1051 ggaacttcct caagccacct ttctccgaca acccttgaga caccgtctgg
1101 tgcccagtgc ggtctacaac gccctcttca cttacacaag ggctgttcgc
1151 accctaagga catcagaccc agccggtttt gttcgcaccc aaagcaacaa
1201 gccagaatac tcttgggtga cgccaagcgc ttgggacaat ctacaaacct
1251 tcgcgctcct caactccccc caccgccctc aggtatgcta ccactttttc
1301 tccagcccaa tcgaccgact caaacttcat ttcggtcaac actggcgagc
1351 atatcttttg gctctcaccc cattcctttc cacatctcca ctactcctcc
1401 ccttattcaa tttcaaattc cctctcccaa tcccaaagct actttctgta
1451 tttcgcaaga ggtttgcatc cccacttttg ctcacctctt acctcccaaa
1501 cgaaatacaa ctcccatttc cactgatgcc caaaatccaa ttgttcccaa
1551 agcatcagac ctgtcacttg ctgcagaggt ttcatcgaac tctgcatcgt
1601 gcgaaccttc taccccttcc tccaatcctg cctcaattcg agtttcgaac
1651 ggcaacaatc atggaactca ttccccgccc ccgaatagtt ctccctctgc
1701 taagtctgat actggcctct cccccactga taactcacat cctgcaggcc
1751 cagactcctc aaaccctgca cgacaattac catcttcacc ttcatccatc
1801 aaagtttcta ctccaatgga atctacaaag ctttcaactg aattctcacc
1851 aagccgaatt ccagcacact ggcggccgtt acaaagcttt gaagattcca
1901 tcaaagttct tacttcaatg gaatcttcaa agtttccaag tgacttccac
1951 tcaacccttt ctcccttatc aacttcaagc tcctccccca gcagcttcct
2001 ctctgcctcc agcccgcccc gttttccatg ctaccccacc ggttacaacc
2051 cagagatcga atgctgcctc tccggcgact catgtcccct gtcaaccatc
2101 gagttcgagc acaactccac aagacagaga gccctcgaac gcctcaaaac
2151 attccatttg gactgtccct atggatggac cgaatgtgat tctccctact
2201 ccagcccctg aacccactcc acaaaacact acctcatccc caccactgga
2251 caacaatcac ccaatccaca cccaacaacc acttcagtcg actgtacttc
2301 cttcaggagc tctgacattc gacgtcgctt ccactccctc aacttctctc
2351 aactccactc caactcctgc cgtagcaaaa tcatcattgg ctgatgatcc
2401 gacagctgtt ggtttggctg ctccattctc caaactattt ccagcagaat
2451 actttcccct ttctgctgaa ttcctcaccc gcagtcgaca tgttccaagc
2501 tccaatttac ctttagccaa aaacttgact gcttactttc ttccttctct
2551 cacctggact tccattccaa tttcaactct gtgggaaact cttcaatcga
2601 aaaatccccg gattctcttc ttcaaaattc tgaaagtcga aaacctgggg
2651 ctttcaactg acattctcac cactttgtgt tatttcttcc attgtcagtg
2701 tgccctacac accccgcagg gtgttttcca ctacggcata atgacttctt
2751 ccagaaaata tcgacattta ctacgaagtc gggcccccac cccatttctc
2801 gaccactcca cgcattactg cctcagctcc tcactccaac cccacccagg
2851 agccactggt gcgtcaagcg ctacgtttca agtacaaatt gacgcctttc
2901 tcccattcac acaggcccac agccatactt cttctctcca tcatgccaaa
2951 aatctaatct ccaacatgaa aaatggattt gacggcattc tctccacaat
3001 agcccactcc aactcagggc caagcccccg acaacgcatg atcactctag
3051 acagccttgt cgacgtggcc gctccaagaa caatcccagt tattcacata
3101 gccggttttg ctggttgcgg caaaactctt ccagttcagc atttgctcaa
3151 aaccaagcac tttcacgact ttcgtgtcag ctgccccacg aatgaactcc
3201 gttctgaatg gaaaagagat atgcaaccga cagccgagaa cttgtggcgc
3251 ttttccacct gggaatcttc tcttctcaaa acttcttcag tgttggtgat
3301 tgatgaaatc tacaagctcc ccaggggtta cctagattta agtatgatcg
3351 ccgacccttc cctacgcctt gtcatcatac ttggtgaccc tctgcaaggc
3401 gagtatcact ccacttctcc acacagctcc aaccacttct taccttcaga
3451 aattcaccgc ttcaaatctt acattgattg ctactgcttt tggtcctacc
3501 ggatacccac ttcattcgca cggatgtttg gtgtatccag tttctccaaa
3551 gagcctggtt ttgtcaggac cctcaccacc catcctccca atggcaaaaa
3601 cctcacaaat gccataaata ctgcactcac tctgcaggaa atgggtcatc
3651 atgccattac cattagcagt agtcaaggca cgacatttca agaagctcac
3701 accatcctac ttgatcgaca caccaaccga ctttcaccaa acaattgcct
3751 ggttgcattg actcgaagca aagttggtgt atacttcgtt ggcaatctac
3801 atcttgcctc caatgacttt gggaccaatt atctcttctc ccaatttctt
3851 gctggcaaag atgtcgatct ccatcaactc tttccatatg tcatgcctta
3901 tctccccaaa cttcatgagc ccatcaagtc tcgttccatt cggttcgttg
3951 caggtctcat caatccttcc atcaatttct ccatcttgcc aagactctca
4001 agacccatcc atctacctcc ccacattccg gttgactaca agaaagattt
4051 tttgatctcc aatcccatag tcgccggcaa caaaatagac gagcgtcttg
4101 acacccatta ccttccaccc actcggctac ccctccattt tgatctccct
4151 ccagggttcc ctcaacctgc cactttttcc gaatctgcac ctcaaccgac
4201 aaatccttta tccctcggac tttttggctt cccctttgaa actctggctg
4251 cttttttcct cccagctcat gatccggaaa tcaaggaaat tatttactcc
4301 gatcaaaaga gcaatccttc cttccagctc acgatccgga aatcaaggaa
4351 attatttact ccgatcaaaa gagcaatcaa tttccttttt ttgaccgtcc
4401 ttttgagctt tcctgccaac cctcctcttt gttggctcca atccattctc
4451 ctgctcgtga tccaacactt cttcctgctt ccatataaga aaagattgcg
4501 ttttcgagct agctctaaac cgtattccat tggcccaact gacgtcatat
4551 taggccaaca cttgtactcc tcctggtgtt cagcatactc acgtcccacg
4601 tctcaagtgc ttcccttcaa ccctgagttg ttcgctgaat gcatcaacct
4651 caatgagtat gctcaacttt cttccaaaac acgttctacc ttggttgcta
4701 acgctcaacg ctcagatccc gactggcgat acacttctgt caggattttt
4751 gccaaagcac aacacaaggt taacgactca tccatcttct caaactggaa
4801 ggcctgccaa acactggctc taatgcatga ttacattatt ctggttctcg
4851 gaccagttaa aaaatatcaa cgcatttatg accagagaga aagaccaccc
4901 caaatctatt accattgtgg tcatactccc actcagcttt cccagtggtg
4951 ctcccaacac ctccggagtc ctgttgccac cactaacgat tacactgctt
5001 ttgatcaatc tcagcatgga gaagcagtcg tctttgagtg cctcaaaatg
5051 aaccgtctct ccattcctcc ccatctcata tctctccact ctcacctcaa
5101 atgctccatc gaaacccaat ttgggcctct tacatgcatg cgtctcaccg
5151 gcgagcctgg gacttatgat gacaactcag attacaatct agctgtcata
5201 tactcccagt acgctatcaa atccgaggcc atcatgattt ctggagacga
5251 ttctgtcatt gatggagttc ctccaatcaa tccaaattgg agcaagatag
5301 ggcccctcct tcatctccgc ttcaaaactg aaaaagttcg tcatcctctc
5351 ttttgtggtt actatgtaac ccctgtaggg gcatgccgtg acccaaaagc
5401 tctgttcgcc aaactcatga tctgcataga tgatggaacc ttccaagaca
5451 aagttctttc atacttgtcc gaattttcca tcggccactc tcttggagac
5501 gtgcttctgc agcatctaca cccagatctc ctaatttacc aaactgctgt
5551 gcatgactgc ttttgcagac gctgctcccc ctctcagaaa atgattctgt
5601 ccctggatcc catccccgaa tcaaagctat tgctgctgct gcgcaaagtc
5651 aaatgggcca gttctcaatt cttcagtcaa ttgccccaaa aagctcgaga
5701 cttcctcgca gccaagtccc aactttcctc tttccatcaa gatcccaagg
5751 tgtcccaact agagtctgaa ttgcttctct ctctcaattg atccatggaa
5801 gaccaaactg cctcacgtgc caaacaacct tctattcctt ctcctggttt
5851 tactctgccc aagccagaca cacagctttc gtctgcaatc gaacttcctt
5901 ttcagttcca ggcaactact ttcggcgcag ccgaaaccgc cgcccaagtc
5951 agtttagctt cttccacacc cataaccaaa ctggcctccc tctatcgtca
6001 tgctcagctt gtcgaatgcc acgcggttat aactcccacc gctttggcta
6051 tctccaatcc actcaccata aacatagtat gggtttctga taactccact
6101 gcaaagccca ccgaaatact gaatgtttac ggtggttctt ctttcacttt
6151 cggaggcgct atcaccacca ccaagcccat catactccct cttccaatga
6201 attccattaa ccccatgctc aaggattcag tcctctacac tgacacccca
6251 aagcttctag catattctgc tgctcccagc tctcctacaa aacagccgac
6301 ggcaaccata caaatttatg gaaaacttcg gctatcttct cctttgctgc
6351 aggcatctta ggatgacctg tttcctcact tttccattcc aatcacaaac
6401 tcggcctcgt gccactctcc gcattatcta cggtaattga agccagtgct
6451 tcttcctcta gcacacagag gttcacttgg gtgcgcctcc ccccccttcc
6501 gtgggctacg gaaacca