Sequence of DPV Chiltepin yellow mosaic virus
Chiltepin yellow mosaic virus, complete genome, isolate 20.8
ACC No: FN563124
Dated: 2010-05-09 | Length: 6517 | CRC: 605198147
ID FN563124; SV 1; linear; genomic RNA; STD; VRL; 6517 BP.
XX
AC FN563124;
XX
DT 03-MAY-2010 (Rel. 104, Created)
DT 09-MAY-2010 (Rel. 104, Last updated, Version 2)
XX
DE Chiltepin yellow mosaic virus, complete genome, isolate 20.8
XX
KW complete genome.
XX
OS Chiltepin yellow mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Tymoviridae; Tymovirus; unclassified Tymovirus.
XX
RN [1]
RP 1-6517
RA Pagan I.;
RT ;
RL Submitted (30-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL Pagan I., Centro de Biotecnologia y Genomica de Plantas, Biotecnologia,
RL Campus Montegancedo. Autopista M40 Km38, Pozuelo de Alarcon, 28223, SPAIN.
XX
RN [2]
RA Pagan I., Betancourt M., de Miguel J., Pineiro D., Fraile A.,
RA Garcia-Arenal F.;
RT "Genomic and biological characterization of chiltep.n yellow mosaic virus,
RT a new tymovirus infecting Capsicum annuum var. aviculare in Mexico";
RL Arch. Virol. 155(5):675-684(2010).
XX
FH Key Location/Qualifiers
FH
FT source 1. .6517
FT /organism="Chiltepin yellow mosaic virus"
FT /isolate="20.8"
FT /mol_type="genomic RNA"
FT /country="Mexico:Tula"
FT /isolation_source="host leaf"
FT /collection_date="2001"
FT /db_xref="taxon:688701"
FT CDS 139. .2211
FT /transl_table=1
FT /gene="OP"
FT /product="overlapping protein/movement protein"
FT /function="within-host movement"
FT /protein_id="CBH31041.1"
FT /translation="MSNGFPTSPRRPILHHSQRCLSESSSEFRRPTSPRLSPALPLDHP
FT KGTPSLPHLLRHPSLRIRNHPPPPRCPQNHRNLPSLQPLEPPRLHSLLRHVHETLKVPK
FT TSSHQPKLPRAHQLPSHPRRHRSLPHHLHHSSNQRLRLHARRFDVFQPIPDRRLVSQQS
FT KSGNSVLQSHLPSRVPLHRSVSLPRDLHLQDIGSNTPLCAGISSRRLIQSAPSSPVLAK
FT SELHISSRDPTLSHQAGILGPRPLPPDPKRSPTFGLNPKKSSSTPRTRSPNPTGSSATK
FT HCSPVPPITNNRESGVLPDPRLFGTSPGHLPSTTLKTPPGAKRGLQRPLHLYKGSPHSE
FT DVGSSRLRSHSKQQAGILLGNPKRLGQSSDLRAPQLPPPPSGMLPLFLQPNRPTQTLFR
FT STLASISFVSHPIPFHISTTPPLIQFQIPSPNPKATFCISQEVCIPTFAHLLPPKRNTT
FT PISTDAQNPIVPKASDLSLAAEVSSNSASCEPSTPSSNPASIRVSNGNNHGTHSPPPNS
FT SPSAKSDTGLSPTDNSHPAGPDSSNPARQLPSSPSSIKVSTPMESTKLSTEFSPSRIPA
FT HWRPLQSFEDSIKVLTSMESSKFPSDFHSTLSPLSTSSSSPSSFLSASSPPRFPCYPTG
FT YNPEIECCLSGDSCPLSTIEFEHDSTRQRALERLKTFHLDCPYGWSECDSPYSSP"
FT CDS 146. .5791
FT /transl_table=1
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /function="replication"
FT /note="contains methyltransferase, papain-like
FT protease,helicase and polymerase domains, and tymonbox"
FT /protein_id="CBH31042.1"
FT /translation="MAFQLALDALSSTTHRDASLNPVLNSAVQPLQDSLQHYPWIIPKE
FT HLPFLISSGIPVSGFGTTPHPHAVHKTIETFLLFNHWSHLASTPSSVMFMKPSKFRKLP
FT AINPNFQELINYRLTPADTVRYPTTSTTLPTNDCVFMHDALMYFNPSQIVDLFLNSPNL
FT ETLYCSLICPAESHFTDLSLYPEIYTYKISGQTLHYVPESHHAGSYNQPLQALSWLKVN
FT SISHPEILLSVTKLESWGPVHSLLIQRGLPPLASIPRRALPPLGRAPQTPQDHLLQNTA
FT ALFHQSQTTESLVSFQIPDCLELPQATFLRQPLRHRLVPSAVYNALFTYTRAVRTLRTS
FT DPAGFVRTQSNKPEYSWVTPSAWDNLQTFALLNSPHRPQVCYHFFSSPIDRLKLYFGQH
FT WRAYLLFLTPFLSTSPLLLPLFNFKFPLPIPKLLSVFRKRFASPLLLTSYLPNEIQLPF
FT PLMPKIQLFPKHQTCHLLQRFHRTLHRANLLPLPPILPQFEFRTATIMELIPRPRIVLP
FT LLSLILASPPLITHILQAQTPQTLHDNYHLHLHPSKFLLQWNLQSFQLNSHQAEFQHTG
FT GRYKALKIPSKFLLQWNLQSFQVTSTQPFLPYQLQAPPPAASSLPPARPVFHATPPVTT
FT QRSNAASPATHVPCQPSSSSTTPQDREPSNASKHSIWTVPMDGPNVILPTPAPEPTPLN
FT LVSSPPLENNHPIHTQQPLQSTVLPSGALTFDVASTPSTSLNSTPTPAVAKSSLADDPT
FT AVGLAAPFSKLFPAEYFPLSAELPTRSRHVPSSNLPLAKNLTAYFLPSLTWTSIPISTL
FT WETLQSKNPRILFFRILKVENLGLSTDILTALCYFFHCQCALHTPQGVFHYGIMTSSRK
FT YRHLLRSRAPTPFLDHSTHYCLSSSLQPHPGATGASSATFQVQIDAFLPFTQAHSHTSS
FT LHHAKNLISNMKNGFDGILSTIAHSNSGPSPRQRMITLDSLVDVAAPRTIPVIHIAGFA
FT GCGKTLPVQHLLKTKHFHDFRVSCPTNELRSEWKRDMQPTAENLWRFSTWESSLLKTSS
FT VLVIDEIYKLPRGYLDLSIIADPSLRLVIILGDPLQGEYHSTSPHSSNHFLPSEIHRFK
FT SYIDCYCFWSYRIPTSFARMFGVSSFSKEPGFVRTLTTHPPNGKNLTNAINTALTLQEM
FT GHHAITISSSQGTTFQEAHTILLDRHTNRLSPNNCLVALTRSKVGVYFVGNLHLASNDF
FT GTNYLFSQFLAGKDVDLHQLFPYVMPYLPKLHEPIKSRSIRFVAGLINPSINFSILPRL
FT SRPIHLPPHIPVDYKKDFLISNPIVAGNKIDERLDTHYLPPTRLPLHFDLPPGFPQPAT
FT FSESAPQPTNPLSLGLFGFPFETLAAFFLPAHDPEIKEIIYSDQKSNPSFPLTIQRLRK
FT SFTPTKKAINFLFLTDLLSSPANPLLYWHQSTLPLMIQRSFLPLYKKRLRFRASSKPYS
FT ICPTDVILGQHLYFSWCSAYSRPTSQVLPFNPELFAECINLNEYAQLSSKTRSTLVANA
FT QRSDPDWRYTSVRIFAKAQHKVNDSSIFSNWKACQTLALMHDYIILVLGPVKKYQRIYD
FT QRERPPQIYYHCGHTPTQLSQWCSQHLQSPVATTNDYTAFDQSQHGEAVVFECFKMNRL
FT PIPPHLISLHSHLKCSIETQFGPLTCMRLTGEPGTYDDNSDYNLAVIYSQYAIKSEAIM
FT ISGDDSVIDGVPPINPNWSKIAPLLHLRFKTEKVRHPLFCGYYVTPVGACRDPEALFAK
FT LMICIDDGSFQDKVLSYLSEFSIGHSLGDVLLQRLHPDLLIYQTAVHDCFCRRCSPSQK
FT MILSLDPIPESKLLLLLRKVKWASSQFFSQLPQKARDFLTAKSQLSSFHQDPKVSQLES
FT ELLLSLN"
FT CDS 5795. .6361
FT /transl_table=1
FT /gene="CP"
FT /product="coat protein"
FT /function="structural protein"
FT /protein_id="CBH31043.1"
FT /translation="MEDQTASRAKQPSIPSPGFTLPKPDTQLSSAIELPFQFQATTFGA
FT AETAAQVSLASSTPITKLASLYRHAQLVECHAVITPTALAISNPLTINIVWVSDNSTAK
FT PTEILNVYGGSSFTFGGAITTPKPIILPLPMNSINPMLKDSGLYTDTPKLLAYSAAPSS
FT PTKQPTATIQIYGKLRLSSPLLQAS"
XX
SQ Sequence 6517 BP; 1585 A; 2197 C; 989 G; 1746 T; 0 other;
fn563124 Length: 6517 09-MAY-2010 Type: N Check: 5062 ..
1 gtaatttatt cccagtctca aaaccctctt ttgagccttg aacgttttct
51 tttcctttcc gcacctccgc ttctccccgt ctccggccag aagcttttct
101 ccaaccgatc cttcactaac tgtcgccact cctaattaat gtccaatggc
151 tttccaacta gccctcgacg ccctatcctc caccactcac agagatgcct
201 ctctgaatcc agttctgaat tccgccgtcc aacctctcca agactctctc
251 cagcactacc cctggatcat cccaaaggaa caccttccct tcctcatctc
301 ctccggcatc ccagtctccg gattcggaac caccccccac ccccacgctg
351 tccacaaaac catcgaaacc ttccttctct tcaaccactg gagccacctc
401 gcctccactc cctcctccgt catgttcatg aaaccctcaa agttccgaaa
451 acttccagcc atcaacccaa acttccaaga gctcatcaac taccgtctca
501 cccccgccga caccgttcgc taccccacca cctccaccac tcttccaacc
551 aacgattgcg tcttcatgca cgacgctttg atgtatttca acccatccca
601 gatcgtcgac ttgtttctca acagtccaaa tctggaaact ctgtattgca
651 gtctcatctg cccagcagag tcccacttca ccgatctgtc tctctacccc
701 gagatctaca cctacaagat atcgggtcaa acactccact atgtgccgga
751 atctcatcac gccggctcat acaatcagcc ccttcaagcc ctgtcttggc
801 taaaagtgaa ctccatatct catccagaga tcctactctc agtcaccaag
851 ctggaatcct ggggccccgt ccactccctc ctgatccaaa gaggtctccc
901 acctttggcc tcaatcccaa gaagagctct tccacccctc ggacgcgctc
951 cccaaacccc acaggatcat ctgctacaaa acactgcagc cctgttccac
1001 caatcacaaa caaccgagag tctggtgtcc ttccagatcc ccgattgttt
1051 ggaacttccc caggccacct tccttcgaca acccttaaga caccgcctgg
1101 tgccaagcgc ggtttacaac gccctcttca cttatacaag ggcagtccgc
1151 actctgagga cgtcggatcc agccggcttc gttcgcactc aaagcaacaa
1201 gccggaatac tcttgggtaa ccccaagcgc ttgggacaat cttcagacct
1251 tcgcgctcct caactccccc caccgccctc aggtatgcta ccactttttc
1301 tccagcccaa tcgaccgact caaactttat ttcggtcaac actggcgagc
1351 atatcttttg tttctcaccc cattcctttc cacatctcca ctactcctcc
1401 ccttattcaa tttcaaattc cctctcccaa tcccaaagct actttctgta
1451 tttcgcaaga ggtttgcatc cccacttttg ctcacctctt acctcccaaa
1501 cgaaatacaa ctcccatttc cactgatgcc caaaatccaa ttgttcccaa
1551 agcatcagac ctgtcacttg ctgcagaggt ttcatcgaac tctgcatcgt
1601 gcgaaccttc taccccttcc tccaatcctg cctcaattcg agtttcgaac
1651 ggcaacaatc atggaactca ttccccgccc ccgaatagtt ctccctctgc
1701 taagtctgat actggcctct cccccactga taactcacat cctgcaggcc
1751 cagactcctc aaaccctgca cgacaattac catcttcacc ttcatccatc
1801 aaagtttcta ctccaatgga atctacaaag ctttcaactg aattctcacc
1851 aagccgaatt ccagcacact ggcggccgtt acaaagcttt gaagattcca
1901 tcaaagttct tacttcaatg gaatcttcaa agtttccaag tgacttccac
1951 tcaacccttt ctcccttatc aacttcaagc tcctccccca gcagcttcct
2001 ctctgcctcc agcccgcccc gttttccatg ctaccccacc ggttacaacc
2051 cagagatcga atgctgcctc tccggcgact catgtcccct gtcaaccatc
2101 gagttcgagc acgactccac aagacagaga gccctcgaac gcctcaaaac
2151 attccatttg gactgtccct atggatggtc cgaatgtgat tctccctact
2201 ccagcccctg aacccactcc gttaaacctt gtctcatctc caccattgga
2251 aaacaatcac ccaatccaca cccaacaacc acttcagtcg actgtacttc
2301 cttcaggagc tctgacattc gacgtcgctt ccactccctc aacttctctc
2351 aactccactc caactcctgc cgtagcaaaa tcatcattgg ctgatgatcc
2401 gacagctgtt ggtttggctg ctccattctc caaactattt ccagcagaat
2451 actttcccct ttctgctgaa cttcctaccc gctcacgaca tgttccaagc
2501 tccaatttac ctttagccaa aaacttgact gcttactttc ttccttctct
2551 cacctggact tccattccaa tttcaactct atgggaaact cttcaatcga
2601 aaaatccccg gattctcttc ttcagaattc tgaaagtcga aaacctgggg
2651 ctttcaactg acattctcac cgctttgtgt tatttcttcc attgtcagtg
2701 tgccctacac accccgcagg gtgttttcca ctacggcata atgacttctt
2751 ccagaaaata tcgacattta ctacgaagtc gggcccccac cccatttctc
2801 gaccactcca cgcattactg cctcagctcc tcactccaac cccacccagg
2851 agccactggt gcgtcaagcg ctacgtttca agtacaaatt gacgcctttc
2901 tcccattcac acaggcccac agccatactt cttctctcca tcatgccaaa
2951 aatctaatct ccaacatgaa aaatggattt gacggcattc tctccacaat
3001 agcccactcc aactcagggc caagcccccg acaacgcatg atcactctag
3051 acagccttgt cgacgtggcc gctccaagaa caatcccagt tattcacata
3101 gccggttttg ctggttgcgg caaaactctt ccagttcagc atttgctcaa
3151 aaccaagcac tttcacgact ttcgtgtcag ctgccccacg aatgaactcc
3201 gttctgaatg gaaaagagat atgcaaccga cagccgagaa tttgtggcgc
3251 ttctccacct gggaatcttc ccttcttaag acttcctcag tgttggtgat
3301 tgacgaaatc tacaagcttc ccagaggcta tttagattta agtataatcg
3351 ccgacccttc cctacgcctt gtcatcatac ttggtgaccc tctccaaggc
3401 gagtatcact ccacttctcc acacagctcc aaccacttct taccttcaga
3451 aattcaccgc ttcaaatctt acattgattg ctactgcttt tggtcctacc
3501 ggatacccac ttcattcgca cggatgtttg gtgtatccag tttctccaaa
3551 gagcctggtt ttgtcaggac cctcaccacc catcctccca atggcaaaaa
3601 cctcacaaat gccataaata ctgcactcac tctgcaggaa atgggtcatc
3651 atgccattac cattagcagt agtcaaggca cgacatttca agaagctcac
3701 accatcctac ttgatcgaca caccaaccga ctttcaccaa acaattgcct
3751 ggttgcattg actcgaagca aagttggtgt atacttcgtt ggcaatctac
3801 atcttgcctc caatgacttt gggaccaatt atctcttctc ccaatttctt
3851 gctggcaaag atgtcgatct ccatcaactc tttccatatg tcatgcctta
3901 tctccccaaa cttcatgagc ccatcaagtc tcgttccatt cggttcgttg
3951 caggtctcat caatccttcc atcaatttct ccatcttgcc aagactctca
4001 agacccatcc atctacctcc ccacattccg gttgactaca agaaagattt
4051 tttgatctcc aatcccatag tcgccggcaa caaaatagac gagcgtcttg
4101 acacccatta ccttccaccc actcggctac ccctccattt tgatctccct
4151 ccagggttcc ctcaacctgc cactttttcc gaatctgcac ctcaaccgac
4201 aaatccttta tccctcggac tttttggctt cccctttgaa actctggctg
4251 cttttttcct cccagctcat gatccggaaa tcaaggaaat tatttactcc
4301 gatcaaaaga gcaatccttc cttcccgctc acgatccaga gattaaggaa
4351 atcgtttact ccgaccaaaa aagcaatcaa tttccttttt ttgaccgacc
4401 ttttgagctc tcctgccaac cctcttctct actggcacca atccactctc
4451 ccgctcatga tccaacgctc cttcctgcct ctatataaga aaaggctgcg
4501 tttccgagcc agctctaaac cttactccat ctgcccaact gatgtcatct
4551 taggccaaca tctgtacttt tcctggtgtt cagcatattc acgccccacc
4601 tctcaagtgc ttcccttcaa tcctgagttg tttgctgaat gcatcaatct
4651 caatgaatat gctcaacttt cttcaaaaac gcgttccacc ttagttgcta
4701 atgcccaacg ctcggatcct gactggcggt acacttctgt caggattttt
4751 gccaaagcac aacacaaggt caacgattca tccatctttt caaactggaa
4801 ggcctgccag acactggctt taatgcatga ctacatcatc ctagtccttg
4851 gaccagtgaa gaagtatcaa cgcatttatg atcagcgaga aagaccaccc
4901 caaatctact accattgtgg tcacactccc actcaactct cccaatggtg
4951 ctctcaacac cttcaaagcc cagttgccac caccaatgac tacactgctt
5001 ttgaccagtc tcagcatgga gaagcagtcg tctttgaatg cttcaagatg
5051 aatcgtctcc ccatacctcc tcatctaata tctctccatt cccacctcaa
5101 atgctccata gagacccagt ttggacccct tacatgcatg cgtctcactg
5151 gtgaacctgg cacctatgat gacaactcag actacaattt ggccgtcatt
5201 tactcacaat acgccatcaa atctgaggcc atcatgattt ctggagatga
5251 ctccgtcata gatggagtcc ccccaatcaa cccaaattgg agtaaaatag
5301 cgccccttct tcatcttcgc ttcaaaactg aaaaagtccg tcatcctctc
5351 ttttgtggtt actatgtaac tcctgtagga gcatgccgtg acccagaagc
5401 tctatttgct aaactcatga tctgcataga tgatggaagc ttccaagaca
5451 aagttctttc atacttgtcc gaattttcca tcggccactc tcttggagac
5501 gtccttttac agcgtctgca cccagatctt ttaatttacc aaaccgccgt
5551 gcatgactgt ttttgcagac gctgctctcc ttctcaaaaa atgatcttgt
5601 ctctagatcc tattcccgag tcaaagctgt tgctactgct gcgcaaagtc
5651 aaatgggcca gttctcagtt tttcagtcaa ttaccccaaa aagcacgtga
5701 tttcctcaca gccaagtccc agctttcatc ctttcatcaa gatcccaagg
5751 tgtcccaact agagtctgaa ttgcttctct ctctcaattg atccatggaa
5801 gaccaaactg cttcacgtgc caaacaacct tctattcctt ctcctggttt
5851 tactctgccc aagccagata cacagctttc gtctgcaatc gaacttcctt
5901 ttcagttcca ggcaactact ttcggcgcag ccgaaaccgc cgcccaagtc
5951 agtttagctt cttccacacc cataaccaaa ctggcctccc tctatcgtca
6001 tgctcagctt gtcgaatgcc acgcggttat aactcccacc gctttggcta
6051 tctccaatcc actcaccata aacatagtat gggtttctga taactccact
6101 gcaaagccca ccgaaatact gaatgtttac ggtggttctt ctttcacttt
6151 cggaggcgct atcaccaccc ccaagcccat catactccct cttccaatga
6201 attccattaa ccccatgctc aaggattcag gcctctacac tgacacccca
6251 aagcttctag catattctgc tgctcccagc tctcctacaa aacagccgac
6301 ggcaaccata caaatttatg gaaaacttcg gctatcttct cctttgctgc
6351 aggcatctta ggatgacctg tttcctcact tttccattcc aatcacaaac
6401 tcggcctcgt gccactctcc gcattatcta cggtaattga agccagtgct
6451 tcttcctcta gcacacagag gttcacttgg gtgcgactcc ccccccttcc
6501 gtgggctacg gaaacca