Sequence of DPV Tomato leaf curl New Delhi virus
Tomato leaf curl New Delhi virus AC3, AV1 and AC1 (partial) genes, clone 8-RCA-AII-p
ACC No: FN645916
Dated: 2012-02-23 | Length: 1504 | CRC: -1801331882
ID FN645916; SV 1; linear; genomic DNA; STD; VRL; 1504 BP.
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AC FN645916;
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DT 08-FEB-2010 (Rel. 103, Created)
DT 23-FEB-2012 (Rel. 111, Last updated, Version 2)
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DE Tomato leaf curl New Delhi virus AC3, AV1 and AC1 (partial) genes, clone
DE 8-RCA-AII-p
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KW .
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OS Tomato leaf curl New Delhi virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-1504
RA Thompson J.R.;
RT ;
RL Submitted (07-DEC-2009) to the INSDC.
RL Thompson J.R., International Centre for Genetic Engineering and
RL Biotechnology (ICGEB), Via Piovega 23, Ca'Tron di Roncade, 31056 (TV),
RL ITALY.
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RN [2]
RA Zaffalon V., Mukherjee S.K., Reddy V.S., Thompson J.R., Tepfer M.;
RT "A survey of geminiviruses and associated satellite DNAs in the
RT cotton-growing areas of northwestern India";
RL Arch. Virol. 0:0-0(2011).
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FH Key Location/Qualifiers
FH
FT source 1. .1504
FT /organism="Tomato leaf curl New Delhi virus"
FT /segment="A"
FT /host="Cyamopsis tetragonoloba"
FT /mol_type="genomic DNA"
FT /country="India:Haryana"
FT /collection_date="Sep-2007"
FT /clone="8-RCA-AII-p"
FT /db_xref="taxon:223347"
FT CDS complement(325. .735)
FT /gene="AC3"
FT /gene_synonym="ren"
FT /product="replication enhancer protein"
FT /db_xref="GOA:D3HIL6"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:D3HIL6"
FT /protein_id="CBJ17678.1"
FT /translation="MITDSRTGEYITADRAESGVYIWEIRNPLYFKILKHDSRPFLTQH
FT DIIKIQIQFNHNLRKALGLHKCFLTFQIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI
FT YNVIRAVYHVLDNVLEQTIDVWTSYDIKLDIY"
FT CDS 29. .328
FT /gene="AV1"
FT /gene_synonym="cp"
FT /product="coat protein"
FT /db_xref="GOA:D3HIL7"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:D3HIL7"
FT /protein_id="CBJ17679.1"
FT /translation="MFDNEPSTATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKF
FT VRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT CDS complement(<855. .1235)
FT /gene="AC1"
FT /gene_synonym="rep"
FT /product="replication associated protein"
FT /db_xref="GOA:D3HIL8"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="UniProtKB/TrEMBL:D3HIL8"
FT /protein_id="CBJ17680.1"
FT /translation="MAPRSRFRINAKNYFLTYPKCSLTKEEALSQLQTLETPTSKKFIK
FT ICRELHEDGTPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI
FT DKDGDILEWGVFQIDGRSARGGQ"
FT gap 755. .854
FT /estimated_length=unknown
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SQ Sequence 1504 BP; 390 A; 271 C; 306 G; 437 T; 100 other;
fn645916 Length: 1504 23-FEB-2012 Type: N Check: 3886 ..
1 cccccaagat tttggggaag tttttaacat gtttgacaat gaaccgagca
51 cagcaacggt gaagaacatg catcgtgatc gttatcaagt gttacggaag
101 tggcatgcga ctgtgacggg aggaacttat gcatctaagg agcaagcatt
151 agttaggaag tttgttaggg ttaataatta tgttgtttat aatcaacaag
201 aggccggcaa gtatgagaat catactgaaa atgcgttaat gttgtatatg
251 gcctgtactc acgcatcaaa tcctgtatat gctactttga aaatccggat
301 ctatttctat gattcggtca caaattaata aatatcgagt tttatatcat
351 atgaagtcca tacatcaatc gtctgttcca atacattatc caatacatga
401 taaactgctc ttattacatt ataaattcct atgacaccta acatatccag
451 gtacttaagt acctgggttt tgaagactct caagaaaatc ccaatctgag
501 ggcgtaagcc cgtccagatt tggaaagtta gaaaacactt gtgaagtccc
551 agggctttcc gcaggttgtg gttgaattgt atttgaatct tgattatgtc
601 gtgctgtgtt aggaagggcc tgctgtcgtg tttcaaaatt ttgaaataca
651 ggggatttcg aatttcccag atatatacgc cactctctgc tcgatccgca
701 gtgatgtatt cccctgtgcg tgaatccgtg atcatgacag ttgattgata
751 cgtannnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
851 nnnnctgacc accacgagca gatcgtccat cgatctggaa aacaccccat
901 tctagaatgt ctccgtcttt gtcgatgtat gctttgacgt ccgatgctga
951 tttagctccc tgaatgttcg gatggaaatg tgctgaccga cttggggaca
1001 ccaagtcgaa gaatctgtta tttttgcatt ggaattttcc ttcgaattgg
1051 atgagaacat ggatatgcgg agtcccatcc tcgtgaagct ctcgacagat
1101 cttgatgaat ttcttcgaag ttggggtttc tagggtttgt aattgggaaa
1151 gtgcctcttc ctttgtaaga gagcacttcg gatacgtgag gaaatagttt
1201 tttgcattta ttctaaaacg acttcgcgga gccatgaaac ttgtcgtttc
1251 gatccggtgt ctctcaactt tctctatgta attggtgtct ggagtcccat
1301 atataggtaa gacaccatat ggcagaattg taattttgaa aagaaaatta
1351 ctttaattca aattccctaa agcggccatt cgtataatat taccgaatgg
1401 ccgcgcaaat ttttatgtgg gaccgcgacg aatgaaattc aagctacatg
1451 gcttctttaa tgcatgggga cctttaaata gacttgctca ccaagtttgg
1501 atcc