Sequence of DPV Mesta yellow vein mosaic virus
Mesta yellow vein mosaic virus segment A, complete sequence, clone 10c-RCA-AI-F
ACC No: FN645922
Dated: 2012-02-23 | Length: 2742 | CRC: 170487464
ID FN645922; SV 1; circular; genomic DNA; STD; VRL; 2742 BP.
XX
AC FN645922;
XX
DT 08-FEB-2010 (Rel. 103, Created)
DT 23-FEB-2012 (Rel. 111, Last updated, Version 2)
XX
DE Mesta yellow vein mosaic virus segment A, complete sequence, clone
DE 10c-RCA-AI-F
XX
KW .
XX
OS Mesta yellow vein mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2742
RA Thompson J.R.;
RT ;
RL Submitted (07-DEC-2009) to the INSDC.
RL Thompson J.R., International Centre for Genetic Engineering and
RL Biotechnology (ICGEB), Via Piovega 23, Ca'Tron di Roncade, 31056 (TV),
RL ITALY.
XX
RN [2]
RA Zaffalon V., Mukherjee S.K., Reddy V.S., Thompson J.R., Tepfer M.;
RT "A survey of geminiviruses and associated satellite DNAs in the
RT cotton-growing areas of northwestern India";
RL Arch. Virol. 0:0-0(2011).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2742
FT /organism="Mesta yellow vein mosaic virus"
FT /segment="A"
FT /host="Abelmoschus esculentus"
FT /mol_type="genomic DNA"
FT /country="India:Haryana"
FT /collection_date="Sep-2007"
FT /clone="10c-RCA-AI-F"
FT /db_xref="taxon:360579"
FT CDS 122. .469
FT /gene="AV2"
FT /product="pre-coat protein"
FT /db_xref="GOA:D3HIM7"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:D3HIM7"
FT /protein_id="CBJ17693.1"
FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQQLSEEYSPDTVGYDLIRDL
FT ISILRCRNYVEASCRYRHFYPRVEGASSTELRQPVFNPCSCPHCPRHKITNVGQQTHVP
FT EAQNVQDIQKP"
FT CDS complement(618. .986)
FT /gene="AC5a"
FT /product="AC5a protein"
FT /db_xref="InterPro:IPR006892"
FT /db_xref="UniProtKB/TrEMBL:D3HIN2"
FT /protein_id="CBJ17694.1"
FT /translation="MSTCHIQQQSILSVIFILPSFLVIIHHVIVNTIEFPNWNLFLTSI
FT LSSCNCRLKPPQNLESITLVVLYSSRRRLVVINIEHLLEIVGGACRTPVSHDPKHNGVR
FT MVLSLNILIHPYLANKIQ"
FT CDS 282. .1052
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="GOA:D3HIN3"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:D3HIN3"
FT /protein_id="CBJ17695.1"
FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYSTRAVAPTVRVTKSRMWA
FT NRPMYRKPRMYRIYRSPDVPRGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR
FT VGKRFCVKSLYFVGKIWMDENIKTKNHTNTVMFWIVRDRRPTGTPYDFQQVFNVYDNEP
FT STATVKNDQRDRFQVLRRFQATVTGGQYACKEQVPIRKFYRVNNYVVYNHQEAGKYENH
FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN"
FT CDS complement(1055. .1459)
FT /gene="AC3"
FT /gene_synonym="ren"
FT /product="replication enhancer protein"
FT /db_xref="GOA:D3HIM9"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:D3HIM9"
FT /protein_id="CBJ17696.1"
FT /translation="MDSRTGERITAAHTRNGVFIWEVPNPLYFKILSHDDRPFTTNMDI
FT IKIRIQFNYNLRRALGVHKCFLTFRVWTTLHPQTGLFLRVFKTQVLKYLNNLGVISINL
FT VIKAVEHVLYNVIQQTMYVDQYSDIKFDLY"
FT CDS complement(1152. .1604)
FT /gene="AC2"
FT /gene_synonym="trap"
FT /product="transcription activator protein"
FT /db_xref="GOA:D3HIN5"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:D3HIN5"
FT /protein_id="CBJ17697.1"
FT /translation="MRSSSPLKDHCTQVPIKVQHREAKRAHRRKRVDLECGCSYYLSIN
FT CFNHGFSHRGTHHCSSYKEWRLYLGGSKSPLFQDPQPRRPSIHDEHGHNKNQDPIQLQP
FT SESSGSAQVFSDLPGLDDLTPSDWSFLKGIQNPSPQVSQQSRCNLN"
FT CDS complement(1501. .2589)
FT /gene="AC1"
FT /gene_synonym="rep"
FT /product="replication initiator protein"
FT /db_xref="GOA:D3HIN6"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:D3HIN6"
FT /protein_id="CBJ17698.1"
FT /translation="MPPKRFLINSKNYFLTYPKCSLTKEEALSQIKNFQTPTSKKYIKI
FT CRELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYID
FT KDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDYVLQFHN
FT LNANLDRIFTPPVEVYVSPFSSSSFDQVPEELEEWAAENVVDDAARPHRPQSIVIEGDS
FT RTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHFLKHFKEFMGAQRDWQ
FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNSALKNWAVKNAIFVTLEGPLY
FT SGTNQSTAQGSEESAQEEESRS"
FT CDS complement(2133. .2441)
FT /gene="AC4"
FT /product="regulatory protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:D3HIM8"
FT /protein_id="CBJ17699.1"
FT /translation="MKMGNLICTCSSSSRGNTSARISDSSTWSPQAGQHISIRTYRELN
FT PAPTSNPTSTRTGTLSSGESFRSTDDLLEGDNRQPTTLTPQRLTQAVSQRLLESLRS"
XX
SQ Sequence 2742 BP; 711 A; 575 C; 643 G; 813 T; 0 other;
fn645922 Length: 2742 23-FEB-2012 Type: N Check: 4335 ..
1 accggatggc cgcgcgattt ttttttagtg gtgggtccag aacgcacgac
51 tatgcagact caaagcttag ataacgctcc tttcgctata agtacttgcg
101 cactaagttt caaattgaaa catgtgggat ccattgttaa acgagttccc
151 tgagacggtt cacgggtttc gttgcatgct tgctattaaa tatcttcaac
201 aactgtctga ggaatactct cctgatacgg ttgggtacga tctaattcgc
251 gatctaattt ctattttacg ttgtaggaat tatgtcgaag cgtcctgccg
301 atatcgtcat ttctaccccc gcgtcgaagg tgcgtcgtcg actgaacttc
351 gacagcccgt attcaacccg tgcagttgcc cccactgtcc gcgtcacaaa
401 atcacgaatg tgggccaaca gacccatgta ccggaagccc agaatgtaca
451 ggatatacag aagccctgat gttcctagag gatgtgaagg cccatgtaag
501 gtgcagtctt ttgatgcgaa gaacgatatt ggtcacatgg gtaaggttat
551 ctgtctatct gatgttacta ggggtattgg gctgacccat cgagtaggga
601 aacgtttttg cgtgaagtca ttgtattttg ttggcaagat atggatggat
651 gagaatatta agactaagaa ccatacgaac accgttatgt tttggatcgt
701 gagagacagg cgtcctacag gcacccccta cgatttccag caagtgttca
751 atgtttatga caacgagcct tctacggcta ctgtaaagaa cgaccagcgt
801 gatcgattcc aggttttgag gaggtttcag gcgacagtta caggaggaca
851 gtatgcttgt aaggaacaag ttccaattag gaaattctat cgtgttaaca
901 attacgtggt gtataatcac caggaagctg ggaagtatga aaatcacact
951 gagaatgctt tgttgttgta tatggcatgt actcatgcct ctaaccctgt
1001 gtatgctact ttgaaagtta ggagttactt ctacgattct gtaacgaatt
1051 aatattaata aagatcgaat tttatatctg aatattgatc cacatacatt
1101 gtttgttgaa ttacattgta caatacgtgt tctacagcct taattactaa
1151 attaattgag attacaccta gattgttgag atacttgagg acttgggttt
1201 tgaataccct taagaaaaga ccagtctgag ggtgtaaggt cgtccagacc
1251 cggaaggtca gaaaacactt gtgcactccc agagctctcc gaaggttgta
1301 gttgaattgg atcctgattt ttattatgtc catgttcgtc gtgaatggac
1351 ggtcgtcgtg gctgaggatc ttgaaataga ggggatttgg aacctcccag
1401 ataaagacgc cattccttgt atgagctgca gtgatgcgtt cccctgtgcg
1451 agaatccatg gttgaagcag ttaatggata gataataaga acacccgcat
1501 tcaagatcta ctctcttcct cctgtgcgct ctcttcgctt ccctgtgctg
1551 tactttgatt ggtacctgag tacaatggtc cttcaagggt gacgaagatc
1601 gcatttttca ctgcccagtt ctttagtgct gagttcttat cctcgtctaa
1651 gaactcttta taactgctgt tgggaccagg attgcagagg aagattgttg
1701 gtatgccgcc tttaatttga actggctttc cgtactttgt gttggattgc
1751 cagtcccttt gggcccccat gaactcttta aagtgtttga ggaagtgggg
1801 atctacgtca tcaatgacgt tataccaggc ctcgttactg tagacctttg
1851 gactaaggtc tagatgccca cacaaatagt tatgtggacc cagtgatcta
1901 gcccacatcg tcttcccggt acgactatct ccctcaatca ctatactttg
1951 tggtctatgt ggccgcgcag cgtcgtcgac aacgttctcg gcagcccatt
2001 cctcaagttc ttccggaact tgatcaaaag aagaagaaga aaaaggagaa
2051 acataaacct ccacaggagg tgtaaaaatc ctatctaaat tagcatttaa
2101 attatggaat tgtaatacat aatcttttgg agctaactcc ttaatgactc
2151 taagagcctc tgacttactg cctgcgttaa gcgctgcggc gtaagcgtcg
2201 ttggctgtct gttgtccccc tctagcagat cgtccgtcga tctgaaactc
2251 tccccactcg agagtgtccc cgtccttgtc gatgtaggat ttgacgtcgg
2301 agctggattt agctccctgt atgttcggat ggaaatgtgc tgacctgctt
2351 ggggagacca ggtcgaagaa tcgctgattc tggcacttgt atttcccctc
2401 gaactggatg agcacgtgca gatgaggttc cccattttca tgaagttctc
2451 tgcagatttt aatatatttt tttgaagtgg gggtttggaa attcttgatt
2501 tgggaaagtg cttcttcttt ggtgagagag cacttgggat aagtgaggaa
2551 ataatttttg gagttaataa ggaaacgctt aggaggcatg ttgactaaga
2601 tagaggaccc gattgaccgc tcttgcaact ctcccctgta tatcgggtct
2651 caatatatag tgagacccaa atggcaaaat tgtaattgtg ggaataaatt
2701 caaaatcctt acgctccaaa aagcggccat ccgtataata tt