Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus (Uganda variant) segment A, isolate EACMV-UG [Ca055]
ACC No: FN668377
Dated: 2010-02-17 | Length: 2799 | CRC: -465376470
ID FN668377; SV 1; circular; genomic DNA; STD; VRL; 2799 BP.
XX
AC FN668377;
XX
DT 17-FEB-2010 (Rel. 103, Created)
DT 17-FEB-2010 (Rel. 103, Last updated, Version 1)
XX
DE East African cassava mosaic virus (Uganda variant) segment A, isolate
DE EACMV-UG [Ca055]
XX
KW complete viral segment, complete genome.
XX
OS East African cassava mosaic virus (Uganda variant)
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2799
RA Winter S.;
RT ;
RL Submitted (13-FEB-2010) to the EMBL/GenBank/DDBJ databases.
RL Winter S., Plant Virus Department, DSMZ, Messeweg 11/12, 38104, GERMANY.
XX
RN [2]
RA Naseem S., Winter S.;
RT "African cassava mosaic virus (ACMV) and East African cassava mosaic virus
RT (EACMV-UG) in single and mixed infected cassava (Manihot esculenta
RT Crantz)";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2799
FT /organism="East African cassava mosaic virus (Uganda
FT variant)"
FT /segment="A"
FT /host="Manihot esculenta"
FT /strain="EACMV-UG"
FT /isolate="EACMV-UG [Ca055]"
FT /mol_type="genomic DNA"
FT /country="Kenya:Kagamega"
FT /collected_by="Were HK, Winter S"
FT /collection_date="2000"
FT /identified_by="Were HK, Winter S"
FT /db_xref="taxon:375009"
FT CDS 172. .528
FT /gene="AV2"
FT /product="precoat protein"
FT /protein_id="CBJ57252.1"
FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT ETQDVQNVSKPRCP"
FT CDS 332. .1105
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="CBJ57253.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR
FT VGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQDFGQIFNMFDNE
FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT CDS complement(1102. .1506)
FT /gene="AC3"
FT /product="REn"
FT /protein_id="CBJ57254.1"
FT /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITDHDKRPGNMNHDI
FT ITLQIRFNHNLRKALGIHKCFLNFKIWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT
FT VLQAVDHVVYDVLLNTLQVTEQHAIKFNIY"
FT CDS complement(1247. .1654)
FT /gene="AC2"
FT /product="TraP"
FT /protein_id="CBJ57255.1"
FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAIRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSKEWRFYLGHNKSPLFRNHRPRQEAREHEPRHHHTPDTVQPQ
FT PSEGIGDSQVFSQLQNMDDLTASDWSFLKSI"
FT CDS complement(1563. .2642)
FT /gene="AC1"
FT /product="replication protein"
FT /protein_id="CBJ57256.1"
FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLQALSYPTNIKFIR
FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI
FT EKGGEFLDAGLFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH
FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEDVEVWVSENICSPAARPWRPISIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEPL
FT FSSAHQSPTPHSEDQGHQT"
FT CDS complement(2252. .2485)
FT /gene="AC4"
FT /product="transcriptional regulator AC4"
FT /protein_id="CBJ57257.1"
FT /translation="MGCLISMFSSNSKASSNVPTRDSSISFPHPDQHIFIRTFRELNHR
FT PMSKLTLKREGNFLTLDFSKSMPEVQGERANI"
XX
SQ Sequence 2799 BP; 729 A; 550 C; 729 G; 791 T; 0 other;
fn668377 Length: 2799 17-FEB-2010 Type: N Check: 8778 ..
1 accggatggc cgcgcccgaa aaagcaggtt gaccccacaa tgaccgcgcc
51 cgtgaaagaa agtggtccct gcgcacttgt tttgatcggc cagtcatatt
101 cgcgcgtgaa agtctagata tttgttgttt gtctttatag acttcgtcgc
151 gaagtagtag agcgcgtcaa catgtgggat ccattggtga acgattttcc
201 cgaaaccgtt cacggtttcc gttctatgct tgctgttaaa tacctgttac
251 atctggaaca ggaatacgat cgcggtactg tcggggctga gtatatacgg
301 gatctaatag gggttctacg gtgtaagaat tatgtcgaag cgaccaggag
351 atataataat ctcaacaccc gtatccaagg tgcggaggag gctgaacttc
401 gacagcccat acacgaaccg tgttgttgcc cccactgtcc gcgtcaccag
451 aagcaaaata tgggccaaca ggcccatgta tcggaaaccc aagatgtaca
501 gaatgtatcg aagcccagat gtccctaagg gctgtgaagg cccatgtaag
551 gtccagtcgt ttgagcagag ggatgatgtg aagcaccttg gtatctgtaa
601 ggtgattagt gatgtgacgc gtgggcctgg gctgacgcac agggtcggaa
651 agaggttttg tatcaagtcc atttacattc ttggtaagat ctggatggat
701 gaaaatatta agaagcagaa tcacactaat aatgtgatgt tttacctgct
751 tagggataga aggccgtatg gcaatgcgcc ccaagacttt gggcagatat
801 ttaacatgtt tgataacgag cccagtactg caacaattaa gaacgatttg
851 agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg
901 tccatctggc atgaaggagc aggcgttggt gaaaaggttt tacaagctga
951 atcatcacgt gacatataat catcaggagg cagggaagta tgagaatcac
1001 acagagaatg cgttgttatt gtatatggca tgtacacatg cctcgaatcc
1051 tgtgtatgct acgctgaaaa tacgcatcta tttttatgat gcagtgacaa
1101 attaataaat gttgaatttt attgcatgtt gctccgtaac ttggagtgtg
1151 tttagtaata catcgtacac aacatgatca acagcttgaa ggacagtgtt
1201 aatggaaata acgcctatca tatctaaata cttgagcact tgatatctaa
1251 atactcttaa gaaacgacca gtctgaggcc gtaaggtcgt ccatattttg
1301 aagttgagaa aacacttgtg aatccccaat gccttccgaa ggttgtggtt
1351 gaaccgtatc tggagtgtga tgatgtcgtg gttcatgttc cctggcctct
1401 tgtcgtggtc ggtgatttcg aaatagaggg gatttgttat gtcccaggta
1451 aaaacgccat tccttgcttg aggcgcagtg atgagttccc ctgtgcgaga
1501 atccatggtt tatgcagtcg atatggagat agaacgagca gccgcattcg
1551 aggtctaccc gcctacgtct gatggccctg gtcttcgctg tgcggtgttg
1601 gactttgatg ggcactagag aacaatggct cgtggagggt gatgaaggtg
1651 gcattcttta aagcccaggc tttaagggat tggttctttt cctcgtccag
1701 aaactcttta tatgatgatg tgggtcctgg attgcagagg aagatagtgg
1751 gaatgccgcc tttaatttga attggcttcc cgtattttgt attgctttgc
1801 cagtctcttt gggcccccat gaattctttg aagtgtttga ggtagtgggg
1851 gtcgacgtca tcaatgacgt tgtaccatgc gtcgtttgaa tataccttgg
1901 gagacagatc caggtgtcca caaagataat tatggggtcc cagtgaacga
1951 gcccacatgg ttttgccggt tcggctatca ccttctagaa caatactgat
2001 cggtctccat ggccgcgcag cgggactgca tatattttcg gatacccata
2051 cctctacgtc ctctgggact tgtgtaaaag aggatgataa gaacggacta
2101 acgtaagttt gtggcggagc ctggaagatt ctatctgcgt tagcagatat
2151 gttatggaac tgtaaaaaaa aggactttgg atctttttct ttaataattt
2201 gaagagcttc ggatttagac gaagcattca acgcgtctgc atatacctga
2251 gctaaatgtt ggccctctcc ccttgcactt ctggcatcga cttggaaaag
2301 tccagcgtca agaaattccc ctcccttttc aatgtaagct ttgacatcgg
2351 acgatgattt agctccctga atgttcggat gaaaatgtgt tgatcgggat
2401 ggggaaatga gatcgaagaa tctcgggttg gtacattgga acttgccttc
2451 gaattggatg agaacatgga gatgaggcac cccatcctga tgtagttctc
2501 tgcaaaccct aatgaatttg atattcgtcg ggtacgaaag ggcttgtaat
2551 tgggaaaggg cctcttcttt cgttaatgag catcggggat aggttatgaa
2601 ataatttttg gcatttattt gaaaacgacc ggctcttggc atattggctg
2651 tcgttttgga tcgggggaca ctcaaaactc caggggaacg gtggaatggg
2701 gggcattata tatgatgtcc cccaatggca tatgtgtaaa taggtagact
2751 tccattcaaa ttttgaattc cgaatattgg cggccatccg attaatatt