Sequence of DPV Croton yellow vein mosaic virus
Croton yellow vein mosaic virus, complete sequence, clone HYDNA A
ACC No: FN678906
Dated: 2012-03-11 | Length: 2752 | CRC: 1815735738
ID FN678906; SV 1; circular; genomic DNA; STD; VRL; 2752 BP.
XX
AC FN678906;
XX
DT 11-MAR-2012 (Rel. 112, Created)
DT 11-MAR-2012 (Rel. 112, Last updated, Version 1)
XX
DE Croton yellow vein mosaic virus, complete sequence, clone HYDNA A
XX
KW .
XX
OS Croton yellow vein mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2752
RA Zia ur Rehman M.;
RT ;
RL Submitted (11-MAR-2010) to the INSDC.
RL Zia ur Rehman M., School of Biological Sciences, Lab 10, SBS, University of
RL the Punjab, Lahore, 54590, PAKISTAN.
XX
RN [2]
RA Zia Ur Rehman M., Haider M.S.;
RT "Begomoviruses infecting Alcea rosea, producing yellow vein symptos in
RT Pakistan.";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2752
FT /organism="Croton yellow vein mosaic virus"
FT /host="Alcea rosea"
FT /mol_type="genomic DNA"
FT /country="Pakistan:Lahore"
FT /isolation_source="host leaves"
FT /collected_by="Muhammad Zia Ur Rehman"
FT /collection_date="2006"
FT /clone="HYDNA A"
FT /db_xref="taxon:207697"
FT CDS 143. .490
FT /gene="av2"
FT /product="pre coat protein"
FT /protein_id="CBK44090.1"
FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDL
FT ISVIRARNYVEASSRYNHFHARFEGTPSSQLRQPICEPCCCPHCPRHQSKGMGEQAHEQ
FT KAQDVQDVQKP"
FT CDS 303. .1073
FT /gene="cp"
FT /product="coat protein"
FT /function="encapsidation"
FT /protein_id="CBK44091.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVNRAAAPIVRVTKAKAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT CDS complement(1070. .1474)
FT /gene="ac3"
FT /product="replication enhancer protein"
FT /protein_id="CBK44092.1"
FT /translation="MDSRTGEPITAAQAENGVYIWEIQNPLYFKILQHHNRPFLMKEDI
FT MTIRIQFNHNLRKALGIHKCFLVFRIWMTSQPQTGRFLRVFKTQVLKYLNNLGVISINN
FT VIRSVDHVLWNVLQHIVYVEQSYSIKFNIY"
FT CDS complement(1215. .1619)
FT /gene="ac2"
FT /product="transcriptional activation protein"
FT /protein_id="CBK44093.1"
FT /translation="MRPSSPSNAHSTQVPIKVQHKIAKKGIRRRRVDLPCGCSYFISIA
FT CHNHGFTHRGTHHCSSSREWRVYLGDSKSPLFQDIAAPQPSIPHERRHNDNPNTVQSQP
FT EESVGDTQMFSSLPNLDDFTASDWSFLKGI"
FT CDS complement(1522. .2607)
FT /gene="ac1"
FT /product="replication associated protein"
FT /protein_id="CBK44094.1"
FT /translation="MTRINSFCVNAKNIFLTYPKCPIPKEQMLEILQSINCPSDKLFIR
FT VAQEKHQDGSLHIHALIQFKGKAKFRNPRHFDVTHPNNSSQFHPNFQGAKSSSDVKSYI
FT EKDSDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYH
FT NLKCNLDRIFTPPVEAYVSPFSSSSFDQVPQELEEWAAENVVSAAARPLRPISIVIEGD
FT SRTGKTIWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNAALKNWALKNATFITLECPL
FT YSGSNQSAAQDSQEGDQASTS"
FT CDS complement(2193. .2450)
FT /gene="ac4"
FT /product="AC4 protein"
FT /protein_id="CBK44095.1"
FT /translation="MGLCISMPSSSSKVKPNSETPDISMSLTLITPPNSTQTSKEQSPA
FT LMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMLQQRP"
XX
SQ Sequence 2752 BP; 777 A; 531 C; 619 G; 825 T; 0 other;
fn678906 Length: 2752 11-MAR-2012 Type: N Check: 7878 ..
1 accggatggc cgcgaaaaaa aagtgggccc cgccatgcac taaatgacaa
51 agacatctcc accaatgaaa agagttcctc aaagcttaat tgttatgtgg
101 tcccctattt aaacttcgtc accaagtagt gcaatacgca ctatgtggga
151 tccattggta aacgagtttc ccgaaaccgt tcacggtttt agatgtatgt
201 tagcagttaa atatctgcag ttagtagaga agacttattc tccagataca
251 ttagggcatg atttaattag ggatttaatt tcagttatca gggctagaaa
301 ttatgtcgaa gcgtccagca gatataatca tttccacgcc cgcttcgaag
351 gtacgccgtc gtctcaactt cgacagccca tatgtgaacc gtgctgctgc
401 ccccattgtc cgcgtcacca aagcaaaggc atgggcgaac aggcccatga
451 acagaaagcc caggatgtac aggatgtaca gaagccctga tgtccctaga
501 ggatgtgaag gcccatgtaa ggtccagtct tttgagtcta gacatgacat
551 tcagcatata ggtaaagtta tgtgtattag tgatgttact cgtggaactg
601 ggctgaccca tcgagtgggt aaaaggtttt gtgtaaagtc tgtttatgtt
651 ttgggtaaga tctggatgga tgaaaatatt aagaccaaaa atcacactaa
701 tagtgtgatg ttctttctag ttagggatcg taggcctgtg gataaacccc
751 aagattttgg agaggtattt aacatgtttg ataatgagcc cagtacggct
801 actgtgaaga acgttcatcg tgataggtat caagttcttc ggaaatggca
851 tgcaactgtt acgggtggac aatatgcgtc aaaggaacaa gccctcgtga
901 agaagtttgt tagggttaac aattatgttg tttataacca gcaagaggct
951 ggcaaatatg agaatcattc tgagaatgcg ttaatgttgt atatggcatg
1001 tactcatgca tctaacccag tgtatgctac tctgaaaata cggatctatt
1051 tttatgattc cgtaacaaat taataaatat taaattttat tgaataagat
1101 tgttctacat atacaatgtg ttgtaataca ttccataata catgatcaac
1151 tgatctgatt acattattaa tactgataac tcctaaatta tttaagtatt
1201 taagaacttg agtcttaaat acccttaaga aacgaccagt ctgaggctgt
1251 gaagtcatcc agattcggaa gactagaaaa catttgtgta tccccaacgc
1301 tttcctcagg ttgtgattga actgtattcg gattgtcatt atgtcttctt
1351 tcatgaggaa tggacggttg tggtgctgca atatcttgaa ataaagggga
1401 ttttgaatct cccagatata cacgccattc tctgcttgag ctgcagtgat
1451 gggttcccct gtgcgtgaat ccatggttgt ggcaggctat ggatatgaag
1501 tatgaacagc cacacggtag atcaactcgt cgacgcctga tccccttctt
1551 ggctatcttg tgctgcactt tgattggaac ctgagtagag tgggcattcg
1601 agggtgatga aggtcgcatt ctttaaagcc caattcttca gtgcagcatt
1651 cttctcttca tccaagaact ctttataact ggaattgggt cctggattgc
1701 agaggaagat agtgggaatt ccgcctttaa tttgaactgg ctttccgtac
1751 tttgtatttg attgccagtc cctttgggcc cccatgaact ctttaaagtg
1801 ctttaggtaa tggggatcta cgtcatcaat gacgttatac caggcatcat
1851 tattgtagac ctttgggcta aggtctagat gtccacacaa ataattatgt
1901 ggtccgagtg atctggccca tatcgtcttg cccgttctac tatcaccctc
1951 tatcactata cttatgggcc tcaaaggccg cgcagcggca ctgacaacgt
2001 tctcggcagc ccactcctca agttcttgtg gaacttgatc aaaagaagaa
2051 gaggaaaaag gagaaacata agcctccacc ggaggtgtaa aaatcctatc
2101 taaattacat tttaaattat gatattgaaa aataaaatct ttggggagtt
2151 tttccctaat tattgctaaa gcagcttcag ccgaacctgc atttagggcc
2201 tctgctgcag catcattagc tgtctgttga cctcctcgag cagatcttcc
2251 atcgatctga aactgacccc agtcgatgta atcactgtcc ttctcgatgt
2301 aggacttgac atcagagctg gactttgctc cttggaagtt tgggtggaat
2351 tgggaggagt tattagggtg agtgacatcg aaatgtctgg ggtttctgaa
2401 tttggcttta cctttgaact ggatgagggc atggatatgc agagacccat
2451 cttggtgttt ttcttgtgcc actctgataa ataatttatc agatgggcaa
2501 tttattgact gaagaatctc gagcatttgc tcttttggta ttgggcattt
2551 tggataagtg aggaagatat ttttggcatt aacacaaaaa gagttaatac
2601 gagtcatatt gaattgggga cactcaaaac tctgaggaat gggggactcg
2651 ggggacgcat ttatatggtg tccccaaatg gcatatttgt aattttgaaa
2701 aatgctttaa ttcaaaattc aaaattccca aagcggccat ccgtataata
2751 tt