Sequence of DPV Grapevine Bulgarian latent virus
Grapevine Bulgarian latent virus segment 2, complete sequence, isolate Serb1
ACC No: FN691935
Dated: 2011-05-03 | Length: 5821 | CRC: 717088857
ID FN691935; SV 1; linear; genomic RNA; STD; VRL; 5821 BP.
XX
AC FN691935;
XX
DT 29-MAR-2011 (Rel. 108, Created)
DT 03-MAY-2011 (Rel. 108, Last updated, Version 3)
XX
DE Grapevine Bulgarian latent virus segment 2, complete sequence, isolate
DE Serb1
XX
KW complete genome.
XX
OS Grapevine Bulgarian latent virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Secoviridae; Comovirinae; Nepovirus; Subgroup C.
XX
RN [1]
RP 1-5821
RA Elbeaino T.;
RT ;
RL Submitted (29-MAR-2010) to the EMBL/GenBank/DDBJ databases.
RL Elbeaino T., Istituto Agronomico Mediterraneo di Bari, IPM-Virology, Via
RL Ceglie 9, Valenzano-Bari, ITALY.
XX
RN [2]
RA Elbeaino T., Digiaro M., Fallanaj F., Kuzmanovic S., Martelli G.P.;
RT "Complete nucleotide sequence and genome organisation of grapevine
RT Bulgarian latent virus";
RL Arch. Virol. 156(5):875-879(2011).
XX
FH Key Location/Qualifiers
FH
FT source 1. .5821
FT /organism="Grapevine Bulgarian latent virus"
FT /host="Vitis vinifera"
FT /isolate="Serb1"
FT /mol_type="genomic RNA"
FT /country="Serbia"
FT /isolation_source="host phloematic tissue"
FT /collected_by="Elbeaino T."
FT /collection_date="15-Feb-2009"
FT /identified_by="Elbeaino Toufic"
FT /db_xref="taxon:748667"
FT CDS 190. .4689
FT /transl_table=1
FT /gene="RNA2"
FT /product="polyprotein segment 2"
FT /protein_id="CBL43396.1"
FT /translation="MCGGGTSTQLPTGCGTLCGAKTPYSKRGLAAAIRDGDLSGPEGRC
FT VYCGALAQIEKGAPQPKTATGPKCSCWRTAVARCPKHGAQPTPARVGKQSAPELKKERV
FT ELPYKKQTCAVVVQVGPLELVYPALVSEEKEPRSAASPLKEDEYVPMGLTLAEAPEWLA
FT YPLECRPYTNAAPAAKPVSQREEFALIKRRLVKLGKEKMRLAYRKRQDKLVAEKKARAA
FT YQRKYDALLPLVREARAHIECEQIIRDLRATERQPLTPAQHELVSKSCRLAGEERASME
FT AFLLGAKARRHRVCPHVAPREEIESPRVVPSCTTPWSGLGMTLTSLRDGGSSDATLGVK
FT SLASRQGDYTCNSALGFPTKSYAVAIMASSLERARKVVRATINFARGVKTLPRKMLEVA
FT SKIKTKVLSVQQKVAPEVVDKCTIVPDIGQVPQEVVVKQTNWNGIQLPEMGVRNIYAFH
FT DDSWSASPEEDEKYTIPWSNRCGPCVHAVIPTTKVPYDDCWYMASSCRTVRQGIRELEK
FT AIIGLYLGAKEERAEELARQTKEPEVQLEVQRETVVKQINEPCVQRVVLVESPEQIAER
FT ARQTAYEAEIAAQRRRQQIDFWYIPLSMKMLLKEPEMQSEVQRVDVVKETKEPDVQHQV
FT APTAEDKQPQPLDEEELVDCESDDEPDFSWVMDKYGITRPYLTMTPIKRESRGAYFANL
FT RVGSHAFYIEQCRRRNKLSREMCMVKRTCALPQTFRYIIRPKDPDRREYELFQTMVTKK
FT IAANELEVRVPRYNPDGIGTRLDIDNHFIYRAECLEDCQWNESTVQAPIENCTPMDDKK
FT GGHPFVPFSLPIQMRGDFRSGGRLLRSLLNFTPFGDLTCNSALGETSEIQSGCKTVMWM
FT PFHQYTLSRQLATRKSKVSGAGENRVADKKQLTERMVFHQPGVLSRMQNQEPQKLNRIG
FT STRSFRMPAVGMPNMTGRVTIPVQARPRATTLIRDGEEVTPARFSTCNSALLADTSIAY
FT IEQGWCPKDATAGRVLEAINLREEIATGDNLVKYDWLAKGMIEPDMSVRLTVGQNPFVG
FT ISIGVCCDFSGRLAQYYDGATAIPIEICNQLPNFVCPISERSVFVHKINMLLAGYNLFQ
FT TQKHFADPYILVYIIDTNTLSASDEWGYTIELCVHSSVHTTQFARTPFLTLPGTFDGTL
FT PLDLWRGPFSFKTGKSAPREERIGINFGSKRTYNSGAKEFYSLPAAHIQLLQSVGGILH
FT GSVIQTGSRAISCELYMILQPDKTANNLEQAVKLPGCRVPTGGGPFSLRIQSAFLRSQI
FT YETGVQLVIYALGGPLGAATISAPYQYMVHFSHITEEEGFVPRPIGTILEFNWATLAQL
FT TLKDRFQIPARLSDLVIPGVSVHMRSNPLASIIGACGFFRGHVTFILQWSLNVEHVKPK
FT TYMQVQTCVGTFIPAPVKHSQILQSWVVPISQRFELRVPFDLVDYPGFNSSGGIGLDHM
FT QPFIDIACGDFSQLEYFNINVELKPGFEIYGRSVTPLK"
FT mat_peptide 190. .1719
FT /gene="RNA2"
FT /product="hypothetical protein (HP)"
FT mat_peptide 1720. .3165
FT /gene="RNA2"
FT /product="movement protein (MP)"
FT mat_peptide 3166. .4689
FT /gene="RNA2"
FT /product="capsid protein (CP)"
XX
SQ Sequence 5821 BP; 1516 A; 1250 C; 1452 G; 1603 T; 0 other;
fn691935 Length: 5821 03-MAY-2011 Type: N Check: 7005 ..
1 cttcagccaa agtgagtccc tgctacgaaa tttcctctag ctctgatcct
51 atatctatag gatattttct tcttgtgatt cctacacatt atttttggtg
101 ctatcgctat ttcctcgcca agcttttcaa gttaatattt ctttctctct
151 atcatattct attgtcattg atattccttt aatgtattga tgtgtggggg
201 ggggactagc acccagttgc caactgggtg tggaacacta tgtggggcga
251 aaaccccata tagtaaacgt ggcctcgcgg ctgccatccg cgatggtgat
301 cttagcggcc ctgaaggccg ctgcgtatat tgtggtgcgc tcgcccaaat
351 tgaaaagggt gcaccacagc ccaaaacagc tactgggcct aaatgtagct
401 gctggcgcac tgctgtcgcc aggtgtccca aacatggggc acaaccaact
451 cctgcaaggg ttggaaagca gagcgctcct gagcttaaga aggagagggt
501 tgagcttccc tacaaaaagc agacttgcgc tgttgtggtg caagttggtc
551 cactagagtt ggtttatcca gctcttgtgt ctgaggagaa ggagcctcgg
601 agtgctgcct ccccacttaa ggaggatgag tatgtcccta tgggactcac
651 tttggctgaa gcgccagagt ggttggccta ccctcttgag tgtaggccat
701 atactaacgc tgctcctgca gcgaaacccg tgtctcaacg ggaagagttc
751 gccctcatta aaaggcgcct tgtcaaactt ggcaaggaaa agatgcggtt
801 ggcctaccgc aagcgacaag acaaacttgt cgccgaaaag aaggcccgtg
851 ctgcgtacca acggaagtac gatgcgttac tcccactggt cagggaggcg
901 cgagctcaca ttgaatgtga gcaaattata agggacctcc gtgctacgga
951 gagacaaccc ttgaccccag ctcaacatga gctggtttct aaatcctgtc
1001 ggctggcagg tgaggagagg gcttctatgg aggcctttct tctaggcgcc
1051 aaggctaggc gtcaccgtgt gtgccctcat gtggcaccac gggaggagat
1101 tgaatctccc cgagttgtgc cgagttgcac aaccccctgg tcagggcttg
1151 gaatgaccct aacctccctt cgcgatggag gttcgagtga tgcgactctt
1201 ggagtcaaat cactagcgtc ccggcaaggg gattatactt gcaattcagc
1251 tcttggcttt cctaccaaga gctatgctgt ggcaatcatg gcatctagct
1301 tggaaagagc taggaaagtc gtgcgtgcga ctataaactt cgcgaggggt
1351 gttaaaactc ttcctaggaa gatgttagaa gtagcatcta aaattaaaac
1401 taaagttctt tctgtgcaac agaaagtcgc accagaagtg gtggataagt
1451 gtactattgt ccctgacatt ggtcaggtcc cacaagaagt tgtggtaaaa
1501 caaactaact ggaatggaat ccagctccca gagatgggag taagaaatat
1551 ctatgctttc catgatgatt catggtctgc tagtccagag gaggacgaaa
1601 aatacaccat tccttggagc aatcgatgtg gaccatgtgt tcatgcggtt
1651 attccaacaa ctaaggtgcc atatgacgat tgttggtata tggctagtag
1701 ttgtcgaaca gtacgccagg ggatccgtga acttgaaaaa gctatcattg
1751 gtctctattt gggtgctaaa gaggaacgag ctgaagagct tgcaagacaa
1801 actaaggaac ctgaagtgca acttgaggtc caacgggaaa ccgttgtaaa
1851 acaaattaat gaaccatgtg tgcaacgtgt ggtcctggtt gaatcaccag
1901 agcaaattgc tgaacgagcg cgccagaccg cttatgaagc tgagattgca
1951 gcgcagagga ggagacaaca gattgatttc tggtatatac ccctctccat
2001 gaagatgcta ctaaaggagc ctgagatgca atctgaggtc caacgtgtag
2051 acgttgttaa agaaactaag gaacccgatg tgcaacatca ggtcgctcca
2101 actgcggagg ataaacaacc acagcccttg gatgaggagg agctcgttga
2151 ttgcgaaagt gatgatgaac ccgacttttc ctgggttatg gacaagtatg
2201 gtattactcg accatatttg acaatgactc ctatcaaaag ggagagcaga
2251 ggagcgtact tcgcaaattt gcgtgttggc tcccatgctt tctatattga
2301 acagtgtcga aggaggaata aattatctag agagatgtgc atggttaagc
2351 gcacttgcgc cttaccacag acctttaggt atattattcg gcccaaagac
2401 cctgatagga gagagtacga gttgttccaa accatggtaa caaagaaaat
2451 tgcggcaaat gagctggaag ttcgagtgcc gcgatataat cctgatggta
2501 ttggaacacg cttggacatt gacaatcatt ttatttatcg agctgaatgt
2551 ttagaagatt gtcagtggaa tgaaagtacg gtgcaagctc caattgaaaa
2601 ttgcactcct atggatgaca aaaaaggggg tcatccattt gtacctttct
2651 ccttaccgat ccaaatgcgt ggtgattttc gcagtggagg ccgtcttctt
2701 cgatctctac tcaatttcac tccatttggt gatttgactt gtaattccgc
2751 tttaggggag acctctgaaa ttcagagcgg atgcaagacc gtgatgtgga
2801 tgccattcca tcaatacacg ctctccagac agcttgccac tcgtaagagt
2851 aaggtgagtg gagctggaga gaatagggtt gctgataaaa agcaactaac
2901 agagagaatg gtgttccatc aaccgggcgt gctctcccgg atgcaaaatc
2951 aagagccaca aaaactgaac aggattgggt ccacccgttc gtttcgcatg
3001 cctgctgtag gtatgcctaa tatgacggga cgcgtaacca ttcctgttca
3051 ggcgcgacca agagccacca ctctcatacg ggatggtgaa gaagtcactc
3101 ctgcgcgttt ctcgacgtgt aatagtgccc ttttagccga taccagcatt
3151 gcttacattg agcaagggtg gtgtcccaag gatgccacgg ctggtagagt
3201 cttagaggct ataaatctca gggaagagat tgcaacagga gacaatttgg
3251 ttaaatatga ttggcttgcg aaaggcatga ttgaaccaga tatgtctgtg
3301 cgtcttaccg ttggacaaaa ccccttcgtg ggaatttcca tcggtgtttg
3351 ttgtgatttt tccgggcgat tggcacaata ctatgatggt gcaactgcga
3401 taccaattga aatatgtaat cagttgccaa attttgtgtg tccaatttct
3451 gagaggagtg tctttgtaca taagattaat atgctccttg cgggttacaa
3501 tttgtttcag acccagaaac attttgcgga cccgtatatt ttagtataca
3551 ttatagacac taacactttg tcagctagtg atgagtgggg gtatactatc
3601 gagttgtgtg ttcatagtag tgtacatact acacaattcg ctcgcacacc
3651 cttcctcacg ctgcctggca ctttcgatgg aactttacca ttggaccttt
3701 ggcgtggccc tttttccttc aaaacgggaa agagtgctcc tcgagaggaa
3751 cgcattggta ttaattttgg ctccaaacgc acatataata gcggagccaa
3801 agagttttac tcgcttccag cagcccatat tcaactttta cagagtgtgg
3851 gaggcatttt gcatggaagc gttatccaga ctggtagtag ggccatatca
3901 tgtgagctct acatgatttt acagccagat aagactgcta ataatttgga
3951 gcaggctgtg aaactaccag gatgtcgagt gcccacgggg gggggtcctt
4001 tttccttgcg tatacaatca gcttttttgc gatcccagat ctatgagacg
4051 ggagtacaat tggtgattta cgctcttggt gggcccctgg gcgctgcaac
4101 gattagcgct ccctatcaat acatggtaca tttctcacac attacggagg
4151 aagagggatt tgtaccacgt cctataggaa ccattctgga atttaattgg
4201 gcaactttgg cacagttgac cctcaaagat aggttccaaa taccagctcg
4251 actgagtgat ctggtcatac cgggtgtctc tgtccacatg cgcagtaatc
4301 ctctagcttc cattatagga gcttgtgggt tctttcgcgg acatgtgacc
4351 tttatattgc aatggtcact caatgttgag catgtcaagc cgaagacgta
4401 tatgcaggtt caaacctgtg tgggcacttt catccccgct cctgttaaac
4451 actctcaaat tttgcagagc tgggttgtgc ctattagtca acggtttgag
4501 ttacgtgtgc ccttcgattt agtcgattat cctgggttta atagttcagg
4551 tgggataggt ctcgatcaca tgcaaccttt catagatatt gcgtgtggag
4601 acttttctca gttggaatat tttaatatca acgttgaact caaaccagga
4651 tttgagatat acggtcgaag cgtaacgcca cttaagtgag acaagtggag
4701 ttgcgattgt tgcagtcagt tttggagtct catcctttct ctgtaggtaa
4751 cagagggtct agtccgcctt aaggactagc aagggttggc atcgcttagc
4801 gagatgtgaa gaccggagta acgcaccggg agaccccaga cttacgtctg
4851 ccccatgagc acatgggttg caatcattta tgttgcttgt atgtataaat
4901 acgcatctta tcattttata cgtattcaca tagaatcgac aaatcttata
4951 gttttcaata aacccacata aactgtcact aatagagtgg catacggttg
5001 agttctttag gacgccttcc gttccgtgaa atcggtatac gtgtgaagat
5051 agggatgctc atccattaaa tgagctaggt tgttggagcc gatctgagtc
5101 caaccgcatt ttgtcacttt agatataagt gacccggtct actgcttccg
5151 agccggtata aatcttaaag cgcccaggcg tccatgactt catggcacgg
5201 ggacgtagat taagtcatct acagaaaaat gacttcgcct ttgattatgt
5251 ggccgtgatg gacatatcct ctcatctttc agagagtata tctttgtttt
5301 agtacccgtg atgaatgtag ttttgaaact actggaggtc tcagagaaga
5351 agcgttttgc caaacgacat tggctcaagg tctatacgac gttaatttga
5401 tagtgtactc aagaagttga ggggtggcac ccttgctttg gatgaggtcc
5451 ggagataaaa accggggggt aattaacccc agctatcggt ataggctgac
5501 ccccatgagg gagctcatgg cgcattttgg tgacttttta gacataaagt
5551 cccatttatg tagtagcgca aggcgctggt gttgaatgtt attgaacctg
5601 gcgttgcagc gcctgctttt caagattgga cgtgattacc atgagaagag
5651 ggatttatac aacaaccccc ttgtgttgct ttgttttttt tactgttttt
5701 ttagactcct gtgagcatta agcaaaagca ggtcgaacct tcagtaagtt
5751 cacaaaaata tttgtatttt tttttgtgag agtttgtgat ttatatttat
5801 atctctttgt ttttttcacg a